Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "Genetic map" on this wiki! See also the search results found.
Page title matches
- ...s a very useful resource for forward genetic mapping. The WormBase Genetic Map inherited its look from ACeDB, however because of internet interface, many ...om the Submenu located on each of the Gene Summary pages. When the Genetic Map is accessed via the Main Menu link, a whole-chromosome graphic display is f4 KB (720 words) - 18:28, 17 August 2010
Page text matches
- ...s a very useful resource for forward genetic mapping. The WormBase Genetic Map inherited its look from ACeDB, however because of internet interface, many ...om the Submenu located on each of the Gene Summary pages. When the Genetic Map is accessed via the Main Menu link, a whole-chromosome graphic display is f4 KB (720 words) - 18:28, 17 August 2010
- This page is designed to assist in the selection of SNPs and visible genetic markers for mapping experiments. The seach results will yield a list of loc As an example we will search for genetic and physical loci around the pab-1 locus. We will search for all loci, Snip1 KB (214 words) - 18:29, 17 August 2010
- ...link in the Main Menu at the top of any page. From there you will find the Genetic Interval link listed under the Genetics, Strains, Phenotypes header. 1) Specify a genetic interval, not more than 2 cM apart, using the names of two genetically mapp1 KB (198 words) - 18:29, 17 August 2010
- Other genomic data will include genetic identity to a classical locus (where it exists), precise numerical coordina ...ture allows the CDS to be interpolated directly onto the classical genetic map, which, in turn, can suggest testable hypotheses of which classical mutatio3 KB (490 words) - 18:31, 17 August 2010
- == Linking to a Physical Map == ...replaced with the contig of interest. To link to a particular clone on the map, link to: <code>http://www.wormbase.org/db/misc/epic?name=X;class=Clone</co6 KB (1,087 words) - 15:07, 19 June 2014
- # Genetic interactions #* Need to map terms between the two groups (see below for list of interactions)3 KB (391 words) - 22:13, 22 February 2011
- Issue: Genetic Map tool down with the following error: Caught exception in WormBase::Web::Cont ...s4251 and the observed recombination events that gave rise to the reported map position.2 KB (347 words) - 14:07, 2 July 2021
- Discussion of WS247 objectives: genetic agents: * have now converted heat map tracks (about 100 tracks)865 bytes (124 words) - 16:34, 27 January 2015
- The Gene Summary page provides concise information on gene identification, genetic location, function, gene ontology, available alleles, cDNAs, protein simila Common name: A CGC approved gene name. Genetic nomenclature for C. elegans can be found here:7 KB (985 words) - 18:28, 17 August 2010
- Within a defined physical or genetic interval, what gene markers and SNPs are available for mapping a newly iden ...t center top of the WormBase front page (Fig. 1.8.1) to begin a search for genetic markers and their strains (http://wormbase.org/db/searches/strains).2 KB (259 words) - 19:56, 11 August 2010
- ...mutant loci. However, for a gene identified solely as a CDS, interpolated map information can indicate which classical mutant alleles might reside within5 KB (855 words) - 19:57, 11 August 2010
- ** The above forms are rarely used and since the Genetic Map is frozen we are not actively collecting this data. No change needed (Mary1 KB (165 words) - 15:47, 10 April 2015
- Map_info Map UNIQUE ?Map XREF Gene #Map_position ...ed_map_position UNIQUE ?Map UNIQUE Float // for loci with CDSs but no real Map position7 KB (712 words) - 10:40, 4 October 2010
- ...oordinates of genetic map features that have been placed onto the physical map (ie cloned loci)'' | ''The estimated maximal extents for genetic loci interpolated into phsyical map coordinates. Coordinates are established based on two- and three-factor map5 KB (650 words) - 23:11, 13 August 2010
- excerpt from "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.", Opp ...et al. [http://www.ncbi.nlm.nih.gov/pubmed/18809916 "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism."], Pr3 KB (462 words) - 16:11, 15 December 2011
- ix) gene_interpolated_map_positions.WS178.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS178.gz - Interpolated map positions for each clone7 KB (762 words) - 10:53, 21 December 2011
- ** User experienced error when clicking on "Genetic Map" widget; no WB response (apparently) yet1 KB (236 words) - 15:55, 17 October 2019
- ...github.com/WormBase/website/issues/400 issue 400] "[wormbase-help] Genetic map data"2 KB (294 words) - 16:14, 16 August 2012
- ## [[UserGuide:Genetic_Map|Genetic Map]]3 KB (338 words) - 17:04, 6 August 2019
- ...estart it, Paulo will take a look. Tree display + schema viewer + genetic map stop working when acedb goes down.2 KB (279 words) - 16:01, 7 July 2022
- ...left or right steps along the map, and large left or right leaps along the map. [[Image:I_seq3.jpg ...a feature's immediate vicinity. These features will grow or shrink as the map is zoomed outward or inward, and can be altered to show many different deta6 KB (975 words) - 18:25, 17 August 2010
- ix) gene_interpolated_map_positions.WS117.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS117.gz - Interpolated map positions for each clone6 KB (695 words) - 11:17, 21 December 2011
- ...es a submenu will appear when you search for certain items such as genetic map, sequence report or cell lineage. The submenu usually is for different disp2 KB (416 words) - 01:03, 22 July 2013
- ...ttp://www.wormbase.org WormBase], a biological database of all genomic and genetic data of the model nematode ''Caenorhabditis elegans'' and related nematodes UserGuide:Genetic Map4 KB (613 words) - 09:23, 30 June 2011
- ...ne_Interaction|interaction wiki]]<br>[[WormBase_Model:Interaction|model]]||Genetic and physical interactions||int_<br> [[Gene_Interaction#Postgres_Table_Names ...on<br>Genetic - Oversuppression/Enhancement<br>Genetic - Phenotype bias<br>Genetic - No_interaction || yes20 KB (3,050 words) - 21:01, 19 April 2017
- ix) gene_interpolated_map_positions.WS122.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS122.gz - Interpolated map positions for each clone6 KB (721 words) - 11:18, 21 December 2011
- IGI Inferred from Genetic Interaction C.elegans genetic map frozen15 KB (1,729 words) - 14:15, 13 September 2012
- #Chris and Gary will try to map WormBase interaction types to BioGRID interaction types and figure out what ...tant, but it would be nice if all of a similar type were grouped (i.e. all genetic ints are together, all suppression ints are together etc.)3 KB (475 words) - 22:50, 17 December 2010
- ...ease indicate if your paper contains 3-factor interval mapping data, i.e., genetic data only. Include Df or Dp data, but no SNP interval mapping.||genenames@w ...ehyde, aldicarb, etc. The use of mutagens for the generation of mutants in genetic screens do not need to be indicated.|||16 KB (2,310 words) - 11:05, 21 December 2011
- **Stable genes map to stable ID **Unstable genes map with a version number4 KB (612 words) - 17:13, 1 December 2011
- ...ease indicate if your paper contains 3-factor interval mapping data, i.e., genetic data only. Include Df or Dp data, but no SNP interval mapping.||genenames@w ...ehyde, aldicarb, etc. The use of mutagens for the generation of mutants in genetic screens do not need to be indicated.|||13 KB (1,960 words) - 11:07, 21 December 2011
- * We are establishing a pipeline to share all physical and genetic interactions with BioGRID * Would be good if phenotype curators could curate genetic AND physical interactions in the same paper8 KB (1,120 words) - 16:19, 5 March 2015
- ...ease indicate if your paper contains 3-factor interval mapping data, i.e., genetic data only. Include Df or Dp data, but no SNP interval mapping.||genenames@w ...ehyde, aldicarb, etc. The use of mutagens for the generation of mutants in genetic screens do not need to be indicated.|||11 KB (1,688 words) - 11:06, 21 December 2011
- Genetic Map Position: Display the chromosome and chromosomal position of the gene. ...ene: We only display experimentally confirmed gene interactions (Physical, Genetic, and Regulatory). The genes are displayed in the following order: genes wit6 KB (847 words) - 23:51, 9 May 2023
- **Newly identified genetic disorder *Tool to identify primers from papers and map them to the genome automatically7 KB (1,158 words) - 17:20, 3 May 2012
- Genetic Genetic_interaction ...n XREF Interactor #Interactor_info // Added WS248; allele involved in genetic interaction50 KB (5,228 words) - 15:10, 21 July 2017
- Genetic Genetic_interaction ...henotype ?Phenotype XREF Interaction // Phenotype associated with a genetic interaction53 KB (6,521 words) - 20:51, 7 March 2019
- ...long with this are given exact nucleotide coordinates and the meiotic gene map position. ...ages. WormBase’s Protein pages give both text and diagrams to let a user map individual sequence features with respect to one another and to the protein19 KB (3,061 words) - 23:01, 13 August 2010
- ...htly cron job. For integrated transgenes, try to include, name, genotype, map position and integration means. For extrachromosomal arrays, include name ==Tab 4 – Genotype/ Genetic Interaction/ NBP Data Curation Fields==12 KB (1,991 words) - 23:45, 14 February 2011
- *Create a GBrowse-driven genetic map *Create a GBrowse-drive physical map25 KB (3,632 words) - 03:11, 28 October 2013
- ix) gene_interpolated_map_positions.WS217.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS217.gz - Interpolated map positions for each clone8 KB (915 words) - 11:10, 21 December 2011
- * broken genetic map5 KB (752 words) - 18:55, 6 December 2012
- | :genetic-code/remark | :map/author35 KB (4,174 words) - 10:52, 2 February 2015
- | Allows for alternate genetic codes for Mitocondria and selenocysteine. | [[WormBase Model:Map|Map]]16 KB (2,207 words) - 23:06, 9 January 2014
- **New genetic interaction ontology with BioGrid, SGD, etc. **Genetic interactions done in parallel with phenotype curation10 KB (1,553 words) - 18:04, 7 February 2013
- | style="color: grey;"| pgonly||app_intx_desc||bigtext||Genetic Intx Desc||5|||||||| |Summary||cns_summary||Bigtext||Summary||genetic expression, stuff between brackets||all||-|-||-||||one time copy from trp_s37 KB (5,333 words) - 19:07, 27 June 2019
- ...argeted modification of the genome and can help with the identification of genetic causes for human disease. Targeted modifications led to a vast amount of mo UbiGRID: a database resource for protein and genetic interactions of the ubiquitin-proteasome system31 KB (4,384 words) - 19:08, 11 April 2014
- *1500 - Genes in region of genetic map - Raymond6 KB (1,069 words) - 20:52, 23 July 2013
- ...re complicated for TAIR, because they have cases where the same symbol can map to multiple, unique locus names. For example, PAP1 is a symbol for at leas For GO ID: map entries in Name or Synonym Field to GO ID using this file:14 KB (2,091 words) - 16:28, 9 December 2010
- * Jonathan Hodgkin, C. elegans geneticist; curator of the CGC genetic map7 KB (1,180 words) - 11:00, 21 December 2011
- ** Are phenotypes included in Ontology Browser also from genetic interactions? Answer: "No", response: "Good" * Separate tables for each interaction type (regulatory, genetic, physical)11 KB (1,703 words) - 15:27, 5 April 2018
- Genetic Genetic_interaction ...ction_phenotype ?Phenotype XREF Interaction // Phenotype associated with a genetic interaction59 KB (8,367 words) - 22:00, 14 December 2018
- IGI Inferred from Genetic Interaction data was derived from the Snyder Lab project to map the binding sites17 KB (2,002 words) - 14:17, 13 September 2012
- *'''Rule 2: '''Map column 8 WBVariation to <allele public name> - *'''Rule 3: '''When there are more than one WBVarIDs in column 8, map other WBVarIDs and create a separate summary for those objects36 KB (5,076 words) - 01:38, 2 March 2016
- ...ata has user submission forms that refer to life stages, anatomy but don't map to WB unique IDs ...inue working on relevant sentence detection for phenotype, maybe expand to genetic interactions11 KB (1,676 words) - 15:28, 2 May 2019
- ...l. While we do have interval search options available through the genetic map and GBrowse, I think the issue is the results page. In the old site, the p8 KB (1,291 words) - 21:09, 23 June 2013
- <h2>Genetic Nomenclature for <span class="species">Caenorhabditis elegans</span></h2><p Genetic nomenclature for <span class="species">Caenorhabditis elegans</span>56 KB (9,514 words) - 09:48, 23 October 2015
- b'.</p><h1>How to apply for new names</h1><h2>Genetic Nomenclature for <span class="species">Caenorhabditis elegans</span></h2><p Genetic nomenclature for <span class="species">Caenorhabditis elegans</span>56 KB (9,520 words) - 11:51, 21 October 2015
- 4. OMIM morbid map disease terms (the first column from ftp://ftp.ncbi.nih.gov/repository/OMIM 1. Used the OMIM morbid map, to extract the human gene list: ftp://ftp.ncbi.nih.gov/repository/OMIM/mor15 KB (2,102 words) - 05:17, 25 September 2014
- * Chris - Genetic interactions * Phenotype data requires a mapping step to map alleles and RNAi to genes9 KB (1,377 words) - 16:44, 2 February 2017
- ...ons in the strain receiving the dsRNA, multiple RNAi gene targets, complex genetic interactions, and/or missing descriptions from the authors as to controls, ...rst_pass.cgi on the web which is listed under "curation Forms" on the site map for tazendra. Add the appropriate number of the WBPaper id, for example ju29 KB (4,152 words) - 20:29, 30 July 2019
- == Interpolated Map Positions == ...ear interpolation of surrounding genetic markers. [ A gene is considered a genetic marker if:67 KB (10,954 words) - 09:22, 19 February 2013
- ...y of every month in the UW Health Sciences Building (HSB) J-wing room 412 (map) |[http://www.genetics-gsa.org/genetics/g-gsa/meetings-mohb.shtml GSA's "Genetic Analysis: From Model Organisms to Human Biology" meeting]12 KB (1,663 words) - 16:28, 9 October 2023
- * We have a table of C.elegans large scale genetic and physical interaction data * Approach: first fix slim terms, map slim terms10 KB (1,474 words) - 15:54, 30 April 2014
- 4. Build the new genetic map database and add some content to the GFF database. - calculates genetic intervals34 KB (5,450 words) - 18:24, 17 August 2010
- ...''C. elegans'' literature and meetings. ACeDB was crucial in aligning the genetic and physical maps and in allowing collaboration between the ''C. elegans'' ...and gene structure; the worm proteome; cells and anatomy; gene mutations, map locations, and functions; or nomenclature. To direct information to any one30 KB (4,765 words) - 20:03, 11 August 2010
- Map ?Map #Map_position //needed for transgenes with no granular mapping, e.g., jus ...ociation with expression patterns, overexpression gene function phenotype, genetic interaction and gene regulation experiments. Although a script was employe29 KB (4,575 words) - 16:23, 3 March 2022
- IGI Inferred from Genetic Interaction which we also dump). The old->new source map is:16 KB (1,820 words) - 14:15, 13 September 2012
- ***Also ported 'Genetic Map' tool ***Add Image Map for alignment image that links to the corresponding hit alignment below29 KB (4,254 words) - 20:25, 27 April 2012
- < Gene ?Gene XREF Map > Gene ?Gene XREF Map235 KB (23,325 words) - 10:33, 3 July 2014
- ...l feeding), Phenotype observed (or not_observed), Gene Regulation objects, Genetic Interaction objects, species, and general remarks about the experiment. If the RNAi experiment indicates a genetic (or any other type) interaction and an Interaction Object ID has not yet be47 KB (7,989 words) - 23:40, 1 September 2015
- ...atch downloads of many sequences at once; identifying the genomic regions, genetic contents, or molecular clones spanning a defined chromosomal interval; elec ...submitting comments or new data, an all-purpose Searches page, and a Site Map. This bar appears at the top of all of the WormBase pages and also includes103 KB (16,375 words) - 23:39, 30 November 2010
- ...urposes including the curation of phenotypes, attaching GO terms to genes, genetic interactions, transgenes, free-text descriptions of genes, and several othe Integration, Map and Strain values are showing in editor window but are blank in postgres. T20 KB (3,124 words) - 19:59, 19 February 2020
- ...c-1 cDNA, however, no Genbank accession number was found, neither did they map the gene to cosmids. ||2/2/02 21:01 ...d coding sequence Y54F10AM.2, which is available through WormBase (genetic map position: III:-14.02). In fact, both by sequence analysis of yk423e6 cDNA c40 KB (4,083 words) - 23:02, 13 August 2010
- ...codes such as IPI (Inferred from Physical Interaction), IGI (Inferred from Genetic Interaction), IC (Inferred from Curator), etc. ...hem, we will have isoforms listed as Q9N5D6-2 and would like to be able to map them back to a specific WP: identifier.30 KB (3,904 words) - 18:45, 13 May 2020
- ...aive Bayes, Gaussian, BWA (80% accuracy), nearest neighbor - wide range of genetic features ...are working closely in collaboration with the INSDC, Ensembl and RefSeq to map all UniProtKB proteins to the under- lying genomic assemblies and to offer29 KB (4,082 words) - 19:15, 11 April 2014
- * elegans_pmap - physical map coordinates for C. elegans * elegans_gmap - genetic map coordinates for C. elegans60 KB (9,496 words) - 23:06, 13 August 2010
- Title: Genetic and molecular analysis of spe-27 , a gene required for spermiogenesis in Ca Use http://www.metaboanalyst.ca/faces/home.xhtml to map ids - at least need Chebi IDs from KEGG50 KB (6,966 words) - 19:15, 13 August 2020
