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  • WormBase Model:Analysis
    [[WormBase Models]] == Model ==
    1 KB (104 words) - 10:38, 10 August 2010
  • WormBase Model:SAGE experiment
    [[WormBase Models]] Could poss use ?Analysis and remove this class?
    543 bytes (47 words) - 09:05, 5 October 2010
  • WBConfCall 2017-10-18-Agenda and Minutes
    * Can use text: "Compare with other model organisms at <AGR logo>" ...ne Set Enrichment Analysis" in (navigation) Tools menu [https://github.com/WormBase/website/issues/5565 #5565]
    2 KB (250 words) - 16:12, 19 October 2017
  • WormBase Model:Database field
    [[WormBase Models]] ?Analysis
    700 bytes (98 words) - 09:44, 4 October 2010
  • WormBase Model:Feature
    [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa
    4 KB (394 words) - 08:39, 16 September 2014
  • WS227 Models.wrm
    == Model Changes == RNASeq ?Analysis Int
    3 KB (306 words) - 10:00, 26 October 2011
  • WormBase Model:Condition
    [[WormBase Models]] == Model ==
    2 KB (183 words) - 22:58, 6 December 2010
  • AceOjbect Redesign Page
    == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.
    12 KB (1,559 words) - 18:14, 15 June 2011
  • Caenorhabditis angaria
    6 Oct 2010: The latest changes to the assembly are due to be added to WormBase in release WS221. ...this is done, we are happy to turn the ownership of the genome sequence to WormBase. - Paul Sternberg.
    3 KB (437 words) - 16:02, 15 December 2011
  • WS203
    New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule
    6 KB (662 words) - 16:50, 21 December 2011
  • WormBase Model:Person
    [[WormBase Models]] == Model ==
    3 KB (272 words) - 16:10, 4 October 2010
  • WormBase Model:Antibody
    [[WormBase Models]] == Model ==
    3 KB (318 words) - 00:53, 7 December 2010
  • WS181
    New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes
    8 KB (885 words) - 16:47, 21 December 2011
  • WormBase Model:Gene cluster
    [[WormBase Models]] == Model ==
    15 KB (1,645 words) - 18:54, 23 January 2014
  • WormBase Models
    = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WBConfCall 2013.11.07-Agenda and Minutes
    [[WS241_Models.wrm | WS241 model details]] ...n - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag
    8 KB (1,246 words) - 15:52, 12 November 2013
  • WormBase-Caltech Weekly Calls July 2014
    === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model
    4 KB (622 words) - 16:47, 6 August 2014
  • Developer documentation
    This page contains information pertinent to employees of WormBase. ...VPuB__KmNs5tErO6VXDY/pub New Employee Orientation] -- ''Getting started at WormBase, for employees at any location. Read this first.''
    12 KB (1,638 words) - 18:25, 18 June 2014
  • WS199
    <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule
    6 KB (661 words) - 16:51, 21 December 2011
  • WormBase Model:Sequence
    [[WormBase Models]] == Model ==
    12 KB (1,258 words) - 09:29, 5 October 2010
  • WormBase Model:Paper
    [[WormBase Models]] == Model ==
    5 KB (471 words) - 16:07, 4 October 2010
  • WormBase Model:Variation
    [[WormBase Models]] == Model ==
    8 KB (853 words) - 23:50, 16 April 2014
  • WormBase-Caltech Weekly Calls September 2016
    * Should we provide an analysis of raw data to users to perform their own comparative analyses * David (Angeles) working on an expression data analysis pipeline
    9 KB (1,490 words) - 15:35, 6 October 2016
  • WebDev 2010.11.03-Agenda and Minutes
    Model in place, but data not yet migrated, but will be in place with WS221. [[Browser_Support_Statement|WormBase Browser Support statement]]
    1 KB (199 words) - 20:57, 3 November 2010
  • Mailing lists
    WormBase staff can find this document in the "Documentation" directory and edit it t = About Groups at WormBase =
    5 KB (757 words) - 01:45, 2 June 2014
  • WBConfCall 2012.12.06-Agenda and Minutes
    = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]
    5 KB (752 words) - 18:55, 6 December 2012
  • WormBase Literature Curation Workflow
    =WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model
    9 KB (1,174 words) - 18:30, 29 August 2012
  • WBConfCall 2020.02.06-Agenda and Minutes
    Is there a link from WormBase to Alaska, and an announcement about its function? == WormBase resources for non-coding RNA ==
    3 KB (561 words) - 18:39, 6 February 2020
  • Haemonchus contortus
    ...ving model nematode ''Caenorhabditis elegans''. This makes it an important model of parasitic nematode biology that is commonly used for experimental studie The current assembly shown at WormBase is from August 2009 and provided by a collaboration of the Wellcome Trust S
    3 KB (493 words) - 16:03, 15 December 2011
  • WormBase-Caltech Weekly Calls July 2015
    * Ontology term enrichment analysis, using ontologies other than gene ontology ** Would be good to have a single central tool/resource for enrichment analysis
    10 KB (1,464 words) - 17:09, 13 August 2015
  • WBConfCall 2021.04.01-Agenda and Minutes
    ...s are being dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will t
    4 KB (709 words) - 13:27, 5 April 2021
  • WormBase-Caltech Weekly Calls July 2013
    *We should be able to start configuring for WormBase at that point *Gary will propose appropriate model changes (e.g. Add "silencer" and "enhancer" to method for GBrowse display)
    7 KB (1,059 words) - 15:37, 1 August 2013
  • Feature WishList
    ''This is a running list of proposed features at WormBase'' == New displays, analysis, and data integration ==
    6 KB (842 words) - 17:01, 21 October 2011
  • WBConfCall 2012.04.19-Agenda and Minutes
    == 1. Model changes (Hinxton) == 1a) Variation model sign off
    7 KB (1,182 words) - 13:50, 20 April 2012
  • WS117
    <pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE
    6 KB (695 words) - 11:17, 21 December 2011
  • WBConfCall 2017-09-06-Agenda and Minutes
    ** Should have a guide for users [http://www.wormbase.org/about/Frequently_asked_questions#f--10 Here] * User needs WormBase official response.
    3 KB (423 words) - 16:35, 7 September 2017
  • WormBase-Caltech Weekly Calls February 2015
    * What implications does this have for the WormBase Ontology Browser? * A lot of GO protein interaction data to extract; might use ?Analysis objects to track attribution of curation
    8 KB (1,120 words) - 16:19, 5 March 2015
  • WBConfCall 2013.10.17-Agenda and Minutes
    ...gff3, transcripts from gff3 has been expanded to represent all species in wormbase (besides any of the "sp" species) ...a for each Ace type has been expanded. Wiki has been updated: http://wiki.wormbase.org/index.php/WormMine#Data_contained_in_WormMine
    2 KB (361 words) - 16:32, 17 October 2013
  • WormBase-Caltech Weekly Calls December 2017
    * There shouldn't be model changes (that affect Caltech) for this next upload ...oogle.com/spreadsheets/d/1sS_uAjBJ2r5H90Lam62Ai0HunjwvfjnklkFNrDoNXeU/edit Analysis of current flags and numbers of entries]
    6 KB (921 words) - 16:52, 4 January 2018
  • WBConfCall 2013.11.21-Agenda and Minutes
    Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]
    6 KB (909 words) - 21:56, 21 November 2013
  • User Guide 2010:TOC
    ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]
    4 KB (613 words) - 09:23, 30 June 2011
  • WormBase-Caltech Weekly Calls April 2015
    ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===
    8 KB (1,147 words) - 15:33, 7 May 2015
  • Meloidogyne hapla
    "Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism ...his database, termed HapPep3, available from the Superfamily repository of model organism proteomes ([http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY http://sup
    3 KB (462 words) - 16:11, 15 December 2011
  • WormBase-Caltech Weekly Calls March 2018
    ...just know what are problematic URLs; should all be handled by main URL www.wormbase.org === Disease model annotation class display ===
    11 KB (1,703 words) - 15:27, 5 April 2018
  • WormBase-Caltech Weekly Calls March 2014
    * ?Construct model === ?Construct model ===
    8 KB (1,218 words) - 17:46, 2 April 2014
  • WormBase-Caltech Weekly Calls December 2015
    * Curators will likely need to work with a models "master" to make model changes * http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget
    5 KB (776 words) - 16:50, 7 January 2016
  • WS160
    New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 http://wwwdev.sanger.ac.uk/Projects/C_elegans/WORMBASE
    6 KB (706 words) - 10:50, 21 December 2011
  • WS214
    New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule
    6 KB (709 words) - 16:49, 21 December 2011
  • WBConfCall 2011.11.17-Agenda and Minutes
    * WormBook mirror: will move from wormbase.sanger.ac.uk to * WormBase mirror: will go offline next week Friday
    7 KB (1,220 words) - 15:50, 25 November 2011
  • WBConfCall 2018.07.19-Agenda and Minutes
    ...nique and powerful in worm, including single cell transcriptomics/sequence analysis, neural circuits, metabolomics, proteomics, ncRNA orthologs. ...inding site (for example, a schematic of promoter etc. on the current gene model).
    11 KB (1,649 words) - 16:10, 19 July 2018
  • WS208
    New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule
    5 KB (581 words) - 16:50, 21 December 2011
  • WS226
    New release of WormBase WS226 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    21 KB (2,346 words) - 11:15, 21 December 2011
  • WormBase-Caltech Weekly Calls February 2011
    *Should we take minutes of Caltech WormBase group meetings and send around? *WormBase-wide conference call twice per month
    8 KB (1,282 words) - 17:08, 7 July 2011
  • WormBase-Caltech Weekly Calls February 2018
    * WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT) * Orthology synchrony is a challenge; WormBase and FlyBase may need to pay special attention to orthology calls and discre
    12 KB (1,809 words) - 16:33, 1 March 2018
  • WormBase-Caltech Weekly Calls June 2015
    * I could not find an ontology that was ready built to adopt; few genetic model organisms, of those, FB has the most useful. Other mods use controlled voca ...in genotypes, to support genotype-to-phenotype (G2P) data aggregation and analysis across diverse research communities and sources)for a cross-species genetic
    6 KB (982 words) - 15:33, 2 July 2015
  • Hinxton 2015.08- Meeting minutes
    * Further discussed capturing/registering when a curator has reviewed a gene model but not made a change ** New db puts #model annotation of the edges of the graph, so does not currently support this.
    5 KB (741 words) - 10:57, 21 August 2015
  • WormBase-Caltech Weekly Calls January 2018
    * Eppendorf tube openers with WormBase logo? *[http://wiki.wormbase.org/index.php/First-pass_flagging_pipelines#Author_first-pass_form_revision
    12 KB (1,930 words) - 17:12, 1 February 2018
  • WS195
    ...r><br>Release notes on the web:<br>-------------------------<br>http://www.wormbase.org/wiki/index.php/Release_Schedule<br><br>Genome sequence composition:<br> ...open your database, e.g.<br>&nbsp;&nbsp;&nbsp; type 'xace /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more informatio
    11 KB (1,614 words) - 16:52, 21 December 2011
  • WormBase-Caltech Weekly Calls January 2015
    Main outline [https://docs.google.com/a/wormbase.org/document/d/1l6pExlCMI88pi_-djk8jt7IzNsMDV-nIEY9Z1gBNh-A/edit here]- not [https://docs.google.com/a/wormbase.org/document/d/1mAxrqVIhxDNpkTUBmtu12sAo58pEG763tgASlzy-3JU/ here]
    10 KB (1,453 words) - 18:52, 4 February 2015
  • WormBase-Caltech Weekly Calls March 2013
    *Prepopulation: Display all (key?) experimental info on gene from WormBase, some Textpresso info like "ABC-1 encodes..." ***Model changes
    7 KB (1,047 words) - 15:34, 4 April 2013
  • WormBase-Caltech Weekly Calls August 2012
    ***Integrated interaction model, genetic interaction ontology ***Need to update Gene expression model to accommodate Epic dataset (John Murray), 3D movies (Bill Mohler), and sin
    12 KB (1,878 words) - 15:55, 6 September 2012
  • WS223
    New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    15 KB (1,610 words) - 11:20, 21 December 2011
  • WS221
    New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    17 KB (1,758 words) - 16:47, 21 December 2011
  • WS228
    New release of WormBase WS228 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    14 KB (1,572 words) - 10:37, 11 November 2011
  • WS227
    New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,738 words) - 11:20, 21 December 2011
  • WormBase-Caltech Weekly Calls July 2020
    *We can make a special note for each gene page, but the people using batch analysis could not catch that easily. * Will work on GO-CAMs and build a relevant model(s)
    9 KB (1,369 words) - 22:47, 5 August 2020
  • WS122
    <pre>New release of WormBase WS122, Wormpep122 and Wormrna122 March 26th 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE
    6 KB (721 words) - 11:18, 21 December 2011
  • WormBase-Caltech Weekly Calls August 2020
    **Groups will switch to using common data model that works for all and common ontology/ontologies in the near future. ** Expression pattern curation needs genetic sex; needs a model at the Alliance for capturing sex
    5 KB (880 words) - 15:40, 3 September 2020
  • WormBase-Caltech Weekly Calls April 2014
    * Testing at juancarlos.wormbase.org (from there go to Tools > Ontology Browser) ** Add a Reactome display to WormBase?
    10 KB (1,474 words) - 15:54, 30 April 2014
  • WormBase-Caltech Weekly Calls February 2013
    *How to use annotation extensions for LEGO model? *WormBase workshop
    8 KB (1,161 words) - 16:34, 7 March 2013
  • WS225
    New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    16 KB (1,674 words) - 11:38, 20 April 2011
  • WS289
    New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!
    16 KB (1,733 words) - 21:55, 11 May 2023
  • WS234
    New release of WormBase WS234 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,653 words) - 10:13, 18 January 2013
  • Meetings
    === Past meetings posted on the WormBase Meeting page === === 2020 - 2021 WormBase Webinars ===
    12 KB (1,663 words) - 16:28, 9 October 2023
  • WormBase-Caltech Weekly Calls January 2019
    Title: WormBase 2019 - Data, Tools and Community Curation ...sitic worm genomic data, and guide participants on how to find data across model organisms at the Alliance of Genome Research.
    9 KB (1,364 words) - 15:39, 7 February 2019
  • WS231
    New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    16 KB (1,820 words) - 14:15, 13 September 2012
  • WBConfCall 2020.11.05-Agenda and Minutes
    ===WormBase Webinars=== === Proposal: Tie WormBase releases to the Alliance release schedule ===
    5 KB (890 words) - 18:36, 5 November 2020
  • Hinxton 2015.07- Meeting minutes
    ** Some species (e.g. P. pac) have few/no gene model changes, but could do with being brought up to latest models and have newes ** MP to create summary of gene model changes for each species
    11 KB (1,714 words) - 11:04, 27 July 2015
  • WBConfCall 2015.06.18-Agenda and Minutes
    ...ZCX1hZ3b-vDdWB4KjIvieALc_GLnYqYCTqnMaJ7Rg/edit (Need to be logged in with WormBase google account to edit it). === WormBase Workshop roll call ===
    9 KB (1,431 words) - 23:32, 23 June 2015
  • WS284
    New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)
    17 KB (1,841 words) - 21:54, 11 May 2023
  • WormBase-Caltech Weekly Calls April 2017
    * Need to change "Tissue Enrichment Analysis" link title under WormBase Tools menu * There's a question about how we now handle model changes going forward
    7 KB (1,010 words) - 17:08, 4 May 2017
  • WBConfCall 2014.07.03-Agenda and Minutes
    http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.404&root=ensembl&view=markup ...ata that only has person communication as evidence. How should users cite WormBase ? How should we make it clear to users that some is published and some isn
    15 KB (2,374 words) - 16:00, 17 July 2014
  • WormBase-Caltech Weekly Calls January 2021
    ...LA group that wanted to look at nuclei data. It uses the tissue enrichment analysis code for the bottom 3 plots. ...hold for a few months to commit time to updating the phenotype annotation model to accommodate, e.g. double mutant phenotypes, multiple RNAi targets (inten
    5 KB (873 words) - 14:41, 4 February 2021
  • WS202
    New release of WormBase WS202, Wormpep202 and Wormrna202 Tue Apr 28 16:02:08 BST 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule
    6 KB (770 words) - 11:06, 21 December 2011
  • WS220
    New release of WormBase WS220, Wormpep220 and Wormrna220 Mon Oct 25 13:22:36 BST 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    16 KB (1,762 words) - 11:10, 21 December 2011
  • WS235
    New release of WormBase WS235 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,708 words) - 10:14, 18 January 2013
  • WormBase-Caltech Weekly Calls May 2021
    * Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s) ...ki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase
    5 KB (670 words) - 15:31, 3 June 2021
  • WormBase-Caltech Weekly Calls 2022
    [[WormBase-Caltech_Weekly_Calls_January_2022|January]] [[WormBase-Caltech_Weekly_Calls_February_2022|February]]
    10 KB (1,547 words) - 21:31, 2 January 2024
  • WormBase-Caltech Weekly Calls October 2013
    === WormBase Ontology Browser (WOBr) === === ?Expr_pattern and ?Movie model changes ===
    13 KB (1,983 words) - 16:40, 7 November 2013
  • Gene Ontology
    ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
    30 KB (3,904 words) - 18:45, 13 May 2020
  • WS232
    New release of WormBase WS232 WS232 was built by Michael Paulini [michael.paulini@wormbase.org]
    15 KB (1,729 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls April 2011
    Transgene Model *Kimberly working on Physical Interaction model
    7 KB (1,103 words) - 18:28, 5 May 2011
  • WormBase Newsletter No. 2, February 2003
    == WormBase User's Survey == ...ll have a chance to win a WormBase mug with Thomas BoulinÕs award-winning WormBase Logo.
    7 KB (1,180 words) - 11:00, 21 December 2011
  • WS230
    New release of WormBase WS230 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (1,950 words) - 09:37, 7 February 2012
  • WS233
    New release of WormBase WS233 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (2,002 words) - 14:17, 13 September 2012
  • WS222
    New release of WormBase WS222, Wormpep222 and Wormrna222 Mon Dec 20 12:07:08 GMT 2010 WS222 was built by Michael Paulini (michael.paulini@wormbase.org)
    15 KB (1,647 words) - 10:06, 22 December 2010
  • WormBase-Caltech Weekly Calls September 2015
    ...ators/users. we'll have to rely on juancarlos.wormbase.org as cost/benefit analysis is unfavourable to consider other options. * Awaiting model approval to move ahead
    6 KB (906 words) - 21:38, 30 September 2015
  • WormBase-Caltech Weekly Calls September 2014
    * Wen needs a couple days from model tagging to prepare the final upload ** WormBase generated expression clusters (custom algorithm?)
    6 KB (857 words) - 16:01, 2 October 2014
  • WormBase Paper Categorization
    * Topics commonly studied in C. elegans due to its advantages as a model system *The ''C. elegans'' pharynx: a model for organogenesis
    10 KB (1,279 words) - 18:20, 18 October 2013
  • WS218
    New release of WormBase WS218, Wormpep218 and Wormrna218 Tue Aug 24 genomes DIR - contains a sub dir for each WormBase species with
    15 KB (1,756 words) - 11:21, 21 December 2011
  • WS224
    New release of WormBase WS224, Wormpep224 and Wormrna224 Fri Mar 4 14:58:13 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    15 KB (1,583 words) - 11:13, 21 December 2011
  • WormBase-Caltech Weekly Calls April 2021
    * Changes requested here: https://github.com/WormBase/website/issues/7900 * Here's the FTP URL: ftp://ftp.wormbase.org/pub/wormbase/releases/WS280/ONTOLOGY/
    11 KB (1,782 words) - 17:55, 13 May 2021
  • WS229
    New release of WormBase WS229 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (1,988 words) - 11:15, 21 December 2011
  • ISB2014 Session4 Microbial Informatics
    Karen Yook/wormbase- Caltech/@wbperson712 resources we used for innate immunity analysis and used by many researchers studying other things
    29 KB (4,082 words) - 19:15, 11 April 2014
  • WS215
    <pre>New release of WormBase WS215, Wormpep215 and Wormrna215 Thu May 27 18:15:29 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule
    19 KB (1,735 words) - 11:07, 21 December 2011
  • RNAi
    == RNAi Data Model == This is the ?RNAi data model as of WormBase Release WS251:
    29 KB (4,152 words) - 20:29, 30 July 2019
  • Updating WormBase
    WormBase is updated with each new build of the database released from Sanger. The li ...g or troubleshooting. This is especially true during cycles where the data model changes significantly.
    34 KB (5,450 words) - 18:24, 17 August 2010
  • WormBase-Caltech Weekly Calls June 2018
    * Issue for WBPaper00048704: https://wormbase.org/resources/paper/WBPaper00048704#0--10 * First author is "Li, C" as in PubMed (correct name) in WormBase as "Chun, L"
    8 KB (1,189 words) - 14:10, 5 July 2018
  • ISB2014 Stein
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • ISB2014 Session5 Data Integration and Sharing
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • COMMENTARY
    ...y </nowiki>''C. elegans'' gene in the published literature can be found in WormBase, by reference either to genes or to cell or tissue types. There are results ...elopers group actively invites suggestions for improvement from users, and WormBase's source code is freely available for local installation and improvement.
    30 KB (4,765 words) - 20:03, 11 August 2010
  • Working Group:Sequence Features
    ** See github ticket 2867 https://github.com/WormBase/website/issues/2867#issuecomment-48041365 *** How many new objects did you add to WormBase
    23 KB (3,248 words) - 12:58, 22 September 2014
  • FP curator comments for St.Louis and Sanger structure correction data type
    [[http://www.wormbase.org/wiki/index.php?title=How_to_FirstPass&action=submit back]] | 4381||Sequence correction K08A8.1 St. Louis, see fig.2; Wormbase shows eight exons, paper shows five. ||48:45.7
    40 KB (4,083 words) - 23:02, 13 August 2010
  • Tasks in Progress
    **Documenting elements of WormBase workflow to ease transition for new staff and keep track of changes made **Added information and links for getting started with WormBase
    29 KB (4,254 words) - 20:25, 27 April 2012
  • UserGuide:Reivsed Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,520 words) - 11:51, 21 October 2015
  • UserGuide:Revised Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,514 words) - 09:48, 23 October 2015
  • Molecule
    ...of similar or diverse nature which are used for high-throughput screening analysis of the gene function, protein interaction, cellular processing, biochemical ==Model==
    50 KB (6,966 words) - 19:15, 13 August 2020
  • WormBase-Caltech Weekly Calls 2023
    * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).
    36 KB (4,994 words) - 17:27, 14 February 2024
  • Paper Tables in Postgres
    ...ble mostly contains legacy information that was imported from the CGC when WormBase starting curating paper data, as PubMed currently does not curate all autho ...ation on editors of paper objects, mostly books. The current ACeDB ?Paper model dumps Editors as ?Text, but there is not a separate ?Editor class like ther
    25 KB (3,238 words) - 16:42, 8 November 2019
  • WS244 Models.wrm
    == Model changes for WS244 == * This cycle we see 5 model changes in 4 classes:
    235 KB (23,325 words) - 10:33, 3 July 2014
  • Expression Pattern
    Current model (WS280) RNASeq ?Analysis
    104 KB (15,303 words) - 19:39, 11 May 2023
  • FAQs
    ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===
    67 KB (10,954 words) - 09:22, 19 February 2013
  • Pictures
    ==Picture Data Model== ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.
    120 KB (19,719 words) - 16:44, 20 October 2023
  • Searching WormBase for Information About C. elegans (Wiley)
    ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of C. briggsae and C. remanei, two cl ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).
    103 KB (16,375 words) - 23:39, 30 November 2010
  • VariationConciseDescriptions
    ...ercontent.com/WormBase/wormbase-pipeline/master/wspec/models.wrm variation model]<br> *phenotype_ontology ftp://ftp.wormbase.org/pub/wormbase/releases/WS251/ONTOLOGY/phenotype_ontology.WS251.obo (correct for latest r
    36 KB (5,076 words) - 01:38, 2 March 2016
  • Concise Descriptions
    http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log ...ng the format Exprnnnn where n is a number; these values correspond to the WormBase ID of the Expr_pattern object; individual entries are comma-separated.
    47 KB (6,852 words) - 04:27, 8 December 2020
  • Person
    ...u don't use it, is it in the emails you send out or in the submit forms in WormBase ? -- J answer Please keep form, must be the one linking to old papers asso http://www.wormbase.org/db/misc/person?name=WBPerson1823;class=Person
    119 KB (18,888 words) - 00:05, 2 May 2014
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