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  • Scripts for file dumping and conversion
    /home/acedb/ranjana/citace_upload/go_curation/protein2go_migration/split_into_curators. /home/acedb/ranjana/citace_upload/go_curation/protein2go_migration/
    539 bytes (84 words) - 19:05, 25 January 2013
  • Data mining
    #[[AceDB classes|AceDB classes]] - ''A comprehensive list of AceDB classes'' #[[AceDB classes tutorial|AceDB classes tutorial]] -''Examples and descriptions of commonly accessed classe
    2 KB (264 words) - 01:36, 1 April 2022
  • New Model Implementation Checklist
    **Status: file created, not yet checked in ACeDB **Status: file created, not yet checked in ACeDB
    1 KB (199 words) - 19:08, 10 February 2014
  • Quick response cheatsheet
    - use top command to check if sgiface is at 100%, if so restart ACeDB ==Restart AceDB==
    784 bytes (128 words) - 21:31, 5 November 2015
  • UserGuide:Display Tools
    The Tree Display shows the data relationships according to each ACeDB data model. Shown in the diagram: red color shows tags, blue color indicate ACeDB Schema
    2 KB (266 words) - 18:26, 17 August 2010
  • Xapian and wormbase
    cd /usr/local/wormbase/acedb/bin acedb> @dump_ace_for_search.script
    658 bytes (108 words) - 16:11, 5 October 2011
  • Orthology, Homology and Paralog data in WormBase
    it is in the ACeDB database on the genes as ortholog/paralog, but we also dump it since a whil ...files, as well as here: ftp://ftp.wormbase.org/pub/wormbase/releases/WS243/acedb /Non_C_elegans_BLAST
    2 KB (336 words) - 14:08, 27 August 2015
  • Importing Protein Structure Data
    brie3:/usr/local/acedb/datasets/structure_data/ cshace: brie3:/usr/local/acedb/dumpdb/
    3 KB (408 words) - 23:36, 13 August 2010
  • Updating WormMart
    WormMart is built every 5 releases of AceDB. Currently, the machine ls2.res.oicr.on.ca is used to build WormMart, then === Get AceDB ===
    2 KB (289 words) - 18:24, 17 August 2010
  • Update Matrix Template
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    3 KB (489 words) - 18:14, 17 August 2010
  • ModENCODE TilingArray
    == Tiling Array Related ACeDB Models ==
    2 KB (220 words) - 00:19, 21 January 2011
  • General specifications
    ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles/ ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
    2 KB (204 words) - 19:18, 17 November 2011
  • Update Matrix WS205
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    3 KB (530 words) - 18:14, 17 August 2010
  • Data mining:WQL tutorial
    [http://grain.jouy.inra.fr/ggpages/ggpages/aboutacedbquery.html About ACEDB Queries (not worm-specific)]
    296 bytes (41 words) - 15:12, 16 June 2011
  • Update Matrix WS209
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (717 words) - 18:20, 17 August 2010
  • Update Matrix WS214
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (719 words) - 18:21, 17 August 2010
  • Update Matrix WS208
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (738 words) - 18:20, 17 August 2010
  • WBConfCall 2021.12.16-Agenda and Minutes
    It's a acedb availability issue; Todd will investigate.
    295 bytes (40 words) - 16:40, 16 December 2021
  • Update Matrix WS211
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (723 words) - 18:21, 17 August 2010
  • Update Matrix WS212
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (723 words) - 18:21, 17 August 2010
  • Update Matrix WS210
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (725 words) - 18:20, 17 August 2010
  • C.remanei
    == ACeDB == The default code is used to show the ACeDB data and there is a GBrowse version available to show the GFF annotation. I
    2 KB (324 words) - 19:34, 11 August 2010
  • WebDev 2009.09.23-Agenda and Minutes
    == 5. Discuss AceDB -> PF (Xiaoqi; 10 minutes) ==
    2 KB (252 words) - 09:25, 28 September 2009
  • Update Matrix WS213
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (725 words) - 18:21, 17 August 2010
  • Update Matrix WS206
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (610 words) - 18:20, 17 August 2010
  • Update Matrix WS215
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (735 words) - 18:22, 17 August 2010
  • Update Matrix WS217
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (735 words) - 18:22, 17 August 2010
  • Phenote .ace citace upload
    /home/acedb/karen/WS_upload_scripts/phenotype/use_package.pl*<br> /home/acedb/karen/WS_upload_scripts/paper_object/get_paper_object.pl*
    5 KB (749 words) - 19:47, 17 May 2018
  • Update Matrix WS207
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (762 words) - 18:20, 17 August 2010
  • Website:WormMine Builds
    ===== AceDB Dump ===== Did not specify AceDB dir in $ACEDB. Searching for tace...
    9 KB (947 words) - 18:27, 12 August 2014
  • AceDB class-Y2H
    [[Category:AceDB]]
    274 bytes (40 words) - 21:51, 11 August 2010
  • WormBase Model:Map error
    AceDB internal class
    169 bytes (19 words) - 14:38, 4 October 2010
  • WormBase Model:ManyMap
    Looks like an acedb internal as the xace code looks for it.
    206 bytes (28 words) - 14:34, 4 October 2010
  • WBConfCall 2023.10.05–Agenda and Minutes
    Example of how Strain curated in NS looks in ACeDB:
    339 bytes (48 words) - 22:45, 4 October 2023
  • UserGuide:Genetic Map
    ...forward genetic mapping. The WormBase Genetic Map inherited its look from ACeDB, however because of internet interface, many features have been changed. ACEDB MAP IMAGE SUBMENU
    4 KB (720 words) - 18:28, 17 August 2010
  • Website:WormBase::API
    The following AceDB model elements are handled generically in the reimplementation. This maxim * you should specify the name of the AceDB model element in lowercase in the configuration file
    2 KB (271 words) - 14:09, 19 June 2014
  • WS186
    The reason for that is that AceDB begins to struggle when one object is linked to 3. Obtain and install a suitable acedb binary for your system
    6 KB (683 words) - 05:51, 3 April 2008
  • WebDev 2016.02.23-Agenda and Minutes
    #*ACeDB to Datomic #**Took reorganized the folder structure when I took away the non ACeDB to Datomic from this repo .
    3 KB (478 words) - 15:41, 23 February 2016
  • WBConfCall 2020.08.20-Agenda and Minutes
    ** Want/need to synchronize Postgres with Hinxton and ACEDB * Chris G wanted to dump pathogenic species, find out how they align with acedb species. How do they get into Hinxton.
    3 KB (440 words) - 08:42, 3 September 2020
  • WBConfCall 2016.12.01-Agenda and Minutes
    Can we replace ACEDB Tree Display with Datatomic? We should continue to provide Tree Display. Ho
    450 bytes (62 words) - 16:44, 1 December 2016
  • WS185
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (680 words) - 07:37, 11 January 2008
  • InterMine Strategy Meeting: May 14, 2013
    * Create versioned folders of XML representing various acedb releases. Build mine off of these. Can be used to resurrect old mines. * Find out how to extract version of data in acedb
    2 KB (241 words) - 15:32, 15 May 2013
  • WBConfCall 2024.01.04-Agenda and Minutes
    ** WBVar02157532 - tur003 Variation page is not generated but exists in ACeDB and JBrowse #9376
    618 bytes (81 words) - 21:36, 2 January 2024
  • WormBaseComparativeGenomicsTools
    ...ailable from the Gene pages (link is called syntenic alignment). Or in the ACeDB database as Homol_data on the C.elegans and C.briggsae chromosomes. * ACeDB contains WABA homol_data on the chromosomes
    5 KB (727 words) - 17:31, 27 June 2009
  • WBConfCall 2021.03.04-Agenda and Minutes
    ...f aCeDB, an object database where modeling is easy for curators to do, and acedb handles XREFs and connecting data automatically. ** Caltech curators were writing .ace text files to load into acedb, and early forms were UIs for templates for .ace text files.
    4 KB (743 words) - 12:22, 5 March 2021
  • WBConfCall 2022.04.07-Agenda and Minutes
    ...take a look. Tree display + schema viewer + genetic map stop working when acedb goes down.
    2 KB (279 words) - 16:01, 7 July 2022
  • WS183
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (800 words) - 10:01, 8 November 2007
  • Linking To WormBase
    == Linking to Acedb Format == ...cal ACeDB database, create a link to <code>http://www.wormbase.org/db/misc/acedb?name=X;class=Y</code>, where X and Y are again replaced with the object nam
    6 KB (1,087 words) - 15:07, 19 June 2014
  • Relations Ontology
    **/home/acedb/kimberly/citace_upload/ro/ontology2ace/ro_obo_to_ro_ace.pl #In the /home/acedb/kimberly/citace_upload/ro/ontology2ace directory on tazendra, use the wget
    3 KB (453 words) - 18:27, 20 September 2023
  • Design Specs: Database Connectivity
    *do "reconnect" if dbh is not set, undef or time-out(AceDB) *http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/acedb.pm
    6 KB (980 words) - 18:48, 11 August 2010
  • AceOjbect Redesign Page
    |No API necessary; AceDB internals. |No API necessary; AceDB internals.
    12 KB (1,559 words) - 18:14, 15 June 2011
  • WS230 Models.wrm
    ...models to supplement the new gff3 dumping functionality being added to the acedb code. Ace2SO class: gives a mapping from Acedb objects to their SO terms.
    3 KB (368 words) - 10:15, 1 February 2012
  • WS184
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (831 words) - 07:36, 11 January 2008
  • WormBase-Caltech Weekly Calls February 2016
    === Postgres data not in ACEDB === * Should we this data get into ACEDB to be converted to Datomic (via the existing pipeline)? Maybe, but only tem
    4 KB (571 words) - 16:48, 3 March 2016
  • Specifications for data submission to the Alliance
    |+Mapping of acedb tags to objects in JSON ! !!Acedb Tags in Annotation <br/> (From ?Disease_model_annotation class)!!Primary Ob
    2 KB (318 words) - 17:43, 26 October 2023
  • Building Frozen Releases
    acedb/ == AceDB ==
    8 KB (1,087 words) - 17:35, 19 June 2014
  • Dumping Script
    The papers cronjob is on the acedb account : ...le names in postgres (pap_nnnnn) and the tag names in the ?Paper model for ACeDB. At the top of the script, there is a list that maps postgres paper table
    2 KB (329 words) - 15:21, 7 August 2014
  • WBConfCall 2023.02.02-Agenda and Minutes
    ...63926 has no title in ACeDB. The paper title exists in postgres but not in ACeDB. In WS287, there are 8 papers from MEDLINE that have no title.
    2 KB (348 words) - 17:52, 2 February 2023
  • Alliance - migrating WormBase papers to Alliance ABC
    ...tech postgres not in acedb, and I thought that anything user-facing was in acedb, but it turns out corresponding author flags are not. It'd be mildly helpf ** The lag between data being updated at Caltech -> Built into acedb -> released into Alliance.
    3 KB (492 words) - 18:48, 17 March 2021
  • Physical Interactions
    ACeDB data models [http://wiki.wormbase.org/index.php/Gene_Interaction#Interactio
    559 bytes (71 words) - 20:41, 13 June 2011
  • WormBase Model:Transcript
    Start_not_found #acedb magic tag End_not_found #acedb magic tag
    4 KB (350 words) - 09:32, 17 June 2013
  • WBConfCall 2018.11.15-Agenda and Minutes
    * For now, we model in ACeDB and convert at Hinxton to Datomic. Curators don’t need to be too concerne ...to think about: what’s the advantage in modelling Datomic vs Modelling in ACeDB?
    2 KB (323 words) - 18:24, 15 November 2018
  • WS211
    The Non-elegans blastx data is no longer loaded into the full acedb database release. install acedb as usual from
    6 KB (766 words) - 16:38, 21 December 2011
  • WormBase-Caltech Weekly Calls March 2021
    === Spreadsheet for Data not in ACEDB === ...alena/Hinxton would like to know how much data at Caltech doesn't get into ACEDB
    5 KB (777 words) - 13:18, 1 April 2021
  • WormBase-Caltech Weekly Calls November 2020
    ...9 by comparing the SimpleMine results generated from these two versions of ACeDB. The goal is to explore the possibility of notifying users some of the new === Curating to human genes in ACEDB ===
    4 KB (695 words) - 14:44, 3 December 2020
  • WBConfCall 2018.09.06-Agenda and Minutes
    Due to ACeDB (which does not support unicode due to it's ancientness), not currently pos
    896 bytes (138 words) - 16:10, 6 September 2018
  • WBConfCall 2020.04.16-Agenda and Minutes
    As we winnow down the number of items at WormBase.org that directly depend on ACEDB (and there are very few left), # Hosting data at AceDB and automatic update from AGR update
    2 KB (303 words) - 18:23, 16 April 2020
  • WormMine
    | Orthology || ACeDB gene class (Ortholog and Ortholog_other tags) and there is also a OICR crea | Interaction || AceDB interaction class
    15 KB (2,088 words) - 16:16, 15 October 2020
  • WormBase Model:Multi counts
    Unused class in wormbase and it appears that the acedb source code doesn't look for this specific class.
    816 bytes (100 words) - 15:47, 4 October 2010
  • Data mining:AQL tutorial
    '''Documentation at AceDB web site''' [http://www.acedb.org/Software/whelp/AQL/ [2]]
    834 bytes (137 words) - 15:09, 16 June 2011
  • WebDev 2010.02.17-Agenda and Minutes
    * connection to AceDB and GBrowse -- persistent
    907 bytes (113 words) - 14:27, 19 February 2010
  • WBConfCall 2021.07.01-Agenda and Minutes
    ...in WormBase::Web::Controller::Tools->tools "Could not connect to database acedb _WS280, host: 7e85f19c6634" User wants to: This WBG article says, "Map data have been deposited in ACeDB." I would like to know the flanking markers used to map ccIs4251 and the ob
    2 KB (347 words) - 14:07, 2 July 2021
  • Software Life Cycle: 4. Updating The Production Servers
    Remove build WSXXX -- including acedb, mysql, and support DBs -- from the staging cluster: Remove build WSXXX -- including acedb, mysql, and support DBs -- from the production cluster:
    8 KB (1,229 words) - 16:17, 30 December 2013
  • WBConfCall 2014.08.07-Agenda and Minutes
    *Example data already accessible in the acedb database * the data is hidden in ACeDB and quite inaccessible
    3 KB (450 words) - 16:07, 7 August 2014
  • WBConfCall 2020.05.06-Agenda and Minutes
    22nd June-17th July - ACeDB production 8th June-3rd July - ACeDB production <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!>
    2 KB (378 words) - 17:04, 11 May 2020
  • WBConfCall 2020.05.07-Agenda and Minutes
    22nd June-17th July - ACeDB production 8th June-3rd July - ACeDB production <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!>
    2 KB (376 words) - 17:03, 11 May 2020
  • Building WormMart
    In simple terms, WormMart is built by transforming WormBase's AceDB database into a BioMart schema MySQL database. Standard BioMart tools are t 1a. Install the ACeDB Software
    6 KB (786 words) - 19:13, 18 June 2014
  • WS207
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (675 words) - 16:42, 21 December 2011
  • WS208
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    5 KB (581 words) - 16:50, 21 December 2011
  • WS212
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    5 KB (582 words) - 11:16, 21 December 2011
  • AceDB classes
    This is a list of the most prominent classes in use in the AceDB database employed by WormBase. [[Category:AceDB]]
    4 KB (568 words) - 11:06, 23 May 2011
  • WormBase-Caltech Weekly Calls April 2013
    **ACEDB software problem ***Possible but difficult to upgrade ACEDB software
    4 KB (651 words) - 16:11, 2 May 2013
  • WormBase gene association file/archive
    In the acedb user account on Tazendra at:/home/acedb/ranjana/GO: #copy the right go.go.<date> file from /home/acedb/ranjana/citace_upload/go_curation/go_dumper_files/ to this directory,change
    4 KB (629 words) - 18:27, 23 November 2020
  • WBConfCall 2021.04.01-Agenda and Minutes
    ...ags data that doesn't make it into acedb). We loose foreign characters in acedb, so we'll be able to keep those in postgres and pass them on to Alliance.<b Raymond: One postgres, two data streams one to acedb and a second to alliance<br>
    4 KB (709 words) - 13:27, 5 April 2021
  • AceDB class-Interaction
    [[Category:AceDB]]
    1 KB (143 words) - 21:51, 11 August 2010
  • WBConfCall 2013.10.17-Agenda and Minutes
    **acedb + website flat file **website flat file only with only database name and description stored in acedb
    2 KB (361 words) - 16:32, 17 October 2013
  • WBConfCall 2013.02.07-Agenda and Minutes
    ****Needs testing as may have implications for acedb. *Data will be kept in acedb for purposes of Cytoscape?
    2 KB (383 words) - 11:59, 15 February 2013
  • WBConfCall 2016.10.06-Agenda and Minutes
    *** Orthology data in WormMine seems *not* to come from WormBase / AceDB ...in WormMine came directly from Pather (via InterMine loader), rather than AceDB
    2 KB (369 words) - 16:38, 6 October 2016
  • InterMine Strategy Meeting: May 21, 2013
    * Find out how to extract version of data in acedb
    1 KB (169 words) - 16:51, 28 May 2013
  • WS196
    ...he GFF files and so visible in the genome browser but not via querying the acedb database. 3. Obtain and install a suitable acedb binary for your system
    6 KB (748 words) - 16:41, 21 December 2011
  • WS204
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (648 words) - 16:16, 21 December 2011
  • Populating the OA and New Dumping Script
    Can likely borrow a lot from the gpad parsing script on tazendra /home/acedb/kimberly/citace_upload/go/go_gpad_parser.pl Currently, that file is on tazendra here: /home/acedb/kimberly/citace_upload/go/gp_annotation.ace
    3 KB (484 words) - 22:19, 21 February 2015
  • WS173
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (639 words) - 10:55, 21 December 2011
  • WormBase-Caltech Weekly Calls February 2017
    === ACEDB dependencies === * Raymond was asked to collect all CIT curator uses of ACEDB, e.g. programmatic access via ACE Perl
    7 KB (1,073 words) - 16:26, 2 March 2017
  • Developer notes
    A number of elements are repeated across the AceDB schema. To make the external model easier to maintain, fetching and parsing <tr><th>Expected AceDB model tag</th><th>Object.pm method</th><th>config field</th><th>template ma
    3 KB (485 words) - 15:37, 19 June 2014
  • WS187
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (647 words) - 16:43, 21 December 2011
  • WS199
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (661 words) - 16:51, 21 December 2011
  • WS171
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (652 words) - 10:55, 21 December 2011
  • Movie
    There were 513 movies in acedb, all pertaining the RNAi class. We are going to generate the movie OA and i /home/acedb/draciti/Movies
    5 KB (814 words) - 18:48, 17 September 2018
  • WS179
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (843 words) - 10:53, 21 December 2011
  • WS131
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (669 words) - 11:18, 21 December 2011
  • Suggested pre-release data checks
    ...se of the database from Sanger. Ideally, you should give a description, an acedb query and expected outcome. I've added the one Igor sent regarding the RNAi ...rm after GFF and comparing that to the number of objects returned from the acedb query after QUERY. Those with an EXPECT instead of QUERY are where I couldn
    7 KB (659 words) - 17:39, 17 August 2010
  • WS107
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (659 words) - 11:17, 21 December 2011
  • WBConfCall 2013.06.06-Agenda and Minutes
    ** Michael: AceDB GFF3 dumper (no firm ETA)
    1 KB (168 words) - 16:06, 6 June 2013
  • WS203
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (662 words) - 16:50, 21 December 2011
  • WBConfCall 2023.12.07-Agenda and Minutes
    .../9376 WBVar02157532 - tur003 Variation page is not generated but exists in ACeDB and JBrowse] - Paolo close?
    1 KB (159 words) - 18:22, 7 December 2023
  • WS194
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (936 words) - 16:48, 21 December 2011
  • WS163
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (645 words) - 10:57, 21 December 2011
  • Evidence Code Ontology
    ** /home/acedb/kimberly/citace_upload/eco/ontology2ace/eco_obo_to_eco_ace.pl * Latest parsing script: /home/acedb/kimberly/citace_upload/go/gpad2ace/2020_July
    6 KB (834 words) - 17:56, 15 June 2020
  • WS158
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (673 words) - 11:07, 21 December 2011
  • WS209
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (687 words) - 16:50, 21 December 2011
  • WS198
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (692 words) - 16:51, 21 December 2011
  • WS197
    3. Obtain and install a suitable acedb binary for your system (available from [http://www.acedb.org/ www.acedb.org]).
    6 KB (672 words) - 16:43, 21 December 2011
  • WS201
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (665 words) - 16:42, 21 December 2011
  • WS175
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (680 words) - 10:54, 21 December 2011
  • WS200
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (722 words) - 16:43, 21 December 2011
  • WS117
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (695 words) - 11:17, 21 December 2011
  • WS146
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (670 words) - 11:09, 21 December 2011
  • WebDev 2011.02.09-Agenda and Minutes
    * Analyzing options which will not search through acedb.
    941 bytes (117 words) - 22:00, 9 February 2011
  • UserGuide:Release Notes
    The "Class counts from old =&gt; new build" under "ACEDB databases" is very helpful. It is a straightforward list telling people the
    1 KB (215 words) - 18:31, 17 August 2010
  • WS135
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (689 words) - 11:19, 21 December 2011
  • WS160
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (706 words) - 10:50, 21 December 2011
  • WS214
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (709 words) - 16:49, 21 December 2011
  • WS122
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (721 words) - 11:18, 21 December 2011
  • WS205
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (711 words) - 16:31, 21 December 2011
  • WormCloud:Overview
    As everybody knows Datomic is the main database that we are moving to from AceDB. Datomic is a DataLog and DynomoDB is an AWS database. We are using these t This repository contains code for converting AceDB Dumps to Datomic logs / databases.
    5 KB (842 words) - 19:41, 17 February 2016
  • November 2012 - Weekly Pipeline Set-up
    /home/acedb/kimberly/ccc_dicty/dicty_ccc_datafiles
    1 KB (205 words) - 17:10, 8 November 2012
  • WS195
    ...command prompt.<br><br>5. See the acedb website for more information about acedb and<br>&nbsp;&nbsp;&nbsp; using xace.<br><br>____________&nbsp; END _______ available at: [[ftp://ftp.sanger.ac.uk/pub2/wormbase/WS195/acedb/patches/inparanoid_patch.ace.bz2 inparanoid_patch]]
    11 KB (1,614 words) - 16:52, 21 December 2011
  • Data Model
    ...WormMine is built by a combination of different data sources (GFF3, FASTA, AceDB dumps, etc.) that are loaded and organized in different tables. At the mome
    1 KB (209 words) - 03:18, 13 November 2018
  • WS229 Models.wrm
    Cosmetic change to allow ACeDB code to dump the data stored in this tag correctly.
    1 KB (178 words) - 09:49, 26 October 2011
  • WBGene information and status pipeline
    !AceDB tag # /home/acedb/cron/populate_gin_locus.pl - updates information from nameserver nightly du
    9 KB (1,464 words) - 14:10, 29 May 2015
  • WS210
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (721 words) - 16:46, 21 December 2011
  • WBConfCall 2011.11.17-Agenda and Minutes
    Gary W created a 100 genomes acedb. It worked, but was slow. It certainly simplies certain processes if all genomes are in acedb,
    7 KB (1,220 words) - 15:50, 25 November 2011
  • WS182
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (716 words) - 16:48, 21 December 2011
  • WS192
    3. Obtain and install a suitable acedb binary for your system (available from [http://www.acedb.org/ www.acedb.org]).
    6 KB (763 words) - 10:43, 21 December 2011
  • WS142
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (720 words) - 11:09, 21 December 2011
  • WS112
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (735 words) - 11:17, 21 December 2011
  • WS213
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (764 words) - 16:45, 21 December 2011
  • WS138
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (740 words) - 11:19, 21 December 2011
  • WBConfCall 2021.03.18-Agenda and Minutes
    Most - but not all - scientific data is held in AceDB ** Example In ACeDB
    3 KB (487 words) - 16:36, 18 March 2021
  • WS191
    3. Obtain and install a suitable acedb binary for your system (available from [http://www.acedb.org/ www.acedb.org]).
    6 KB (756 words) - 16:53, 21 December 2011
  • WBConfCall 2012.07.019-Agenda and Minutes
    *Database corruption (ACEDB) problem *?Tree and ?Tree_node classes in ACEDB; do people use them?
    4 KB (617 words) - 17:01, 19 July 2012
  • Disease and Drugs
    ==Acedb model changes for human disease data in WB==
    5 KB (782 words) - 20:56, 8 January 2020
  • WS188
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (769 words) - 11:01, 21 December 2011
  • WormBase-Caltech Weekly Calls August 2020
    === Species in Postgres and ACEDB/Datomic === * Want to be sure that what gets dumped aligns with species loaded into ACEDB
    5 KB (880 words) - 15:40, 3 September 2020
  • WS178
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (762 words) - 10:53, 21 December 2011
  • WS176
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (783 words) - 10:46, 21 December 2011
  • WS172
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (783 words) - 10:55, 21 December 2011
  • Updating Postgres with New WS Information
    ...copy all .ace files from spica:/home/citpub/wen/WSDump/ to tazendra:/home2/acedb/cron/dump_from_ws/files/ *In the home2/acedb/cron/dump_from_ws/files directory, there is a file, latestDate, that logs t
    18 KB (2,743 words) - 17:14, 16 March 2023
  • WBConfCall 2024.04.04-Agenda and Minutes
    *Do we need to change the Database name in AceDB? No **IDs are stored in AceDB without the prefix, but with the Database name OMIM
    3 KB (525 words) - 17:20, 4 April 2024
  • WS154
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (749 words) - 11:08, 21 December 2011
  • WebDev 2009.10.07-Agenda and Minutes
    ...tions re: Chado and WB. Chado DB populated for modEncode effort with some AceDB data.
    1 KB (205 words) - 16:53, 7 October 2009
  • WS216
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (818 words) - 11:10, 21 December 2011
  • WebDev 2009.11.11-Agenda and Minutes
    * AceDB work to produce GFF3 (with Ed Griffith)
    1 KB (227 words) - 18:00, 11 November 2009
  • WS206
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (796 words) - 16:46, 21 December 2011
  • WS202
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (770 words) - 11:06, 21 December 2011
  • WBConfCall 2012.04.19-Agenda and Minutes
    a) Really need to Unify disconnect between the ACeDB or Not ACeDB species ?? Gene pages would require ACeDB integration ??
    7 KB (1,182 words) - 13:50, 20 April 2012
  • WS180
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (771 words) - 10:52, 21 December 2011
  • WormBase Model:Map
    Lots of unused tags, but acedb internal class.
    2 KB (208 words) - 14:36, 4 October 2010
  • Software for nematode research
    *[http://www.acedb.org ACeDB] - ''The database engine that drives WormBase''
    2 KB (284 words) - 22:43, 16 August 2010
  • WBConfCall 2022.11.17-Agenda and Minutes
    ...an update about the Waterson scRNASeq graphs. The pictures are already in ACeDB so just wait for the web display.
    1 KB (217 words) - 20:07, 17 November 2022
  • Entity classes and problems
    From acedb on spica '''Allele/SNP''' -> ''acedb on spica'' ; Variation Report page<br>
    10 KB (1,696 words) - 17:21, 25 July 2013
  • WS193
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (944 words) - 16:52, 21 December 2011
  • WS147
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (815 words) - 11:09, 21 December 2011
  • WS170
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (820 words) - 10:51, 21 December 2011
  • WS127
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (872 words) - 11:18, 21 December 2011
  • WormBase-Caltech Weekly Calls March 2020
    === Latest ACEDB === * Getting latest ACEDB build from staging FTP (for descriptions, etc.)
    6 KB (903 words) - 15:28, 2 April 2020
  • WS177
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    9 KB (819 words) - 10:53, 21 December 2011
  • ALTERNATE PROTOCOL 1: INSTALLING AND RUNNING WormBase LOCALLY
    ...advantage of two hard drives is that WormBase uses two separate databases (ACeDB and MySQL) which work better if put on separate disks. If installing WormBase on a computer with two hard drives, place the ACeDB component of WormBase on one drive and the MySQL component on the other; th
    4 KB (623 words) - 20:00, 11 August 2010
  • NBC sign off documentation
    ...ected to diseases would reappear on the new site, but I don't know how, as acedb might be a bit slowish to search through the text (but maybe it is fast eno ...ws227). I don't know of it was one of our best ideas to put the urls into acedb, as it now takes two months to fix broken links.
    4 KB (583 words) - 20:22, 29 July 2011
  • Life Stage
    .ace file to modify located here: /home/acedb/draciti/Life_stage /home/acedb/draciti/Life_stage/parse.pl
    14 KB (2,213 words) - 19:26, 12 February 2019
  • WebDev 2013.06.14-Agenda and Minutes
    ** to run on new data in acedb (catch data problems??!)
    2 KB (244 words) - 15:52, 14 June 2013
  • Adding Papers not in PubMed
    To do this, you will need to login to tazendra using the acedb account and access postgres with psql testdb.
    2 KB (247 words) - 19:37, 19 November 2010
  • Virtual Machines
    --acedb/ Xace - ''the graphical interface to AceDB''
    11 KB (1,664 words) - 18:43, 17 August 2010
  • Adding new Phenotype2GO annotations to postgres
    ...o GAF files for generating the WS249 upload are on mangolassi here: /home/acedb/kimberly/citace_upload/go/phenotype2go/new_annotation_entries/WS249_upload ***Files are currently on mangolassi here: /home/acedb/kimberly/citace_upload/go/phenotype2go/new_annotation_entries/WS249_upload/
    6 KB (1,087 words) - 19:52, 27 July 2015
  • Updating ontology (.obo) files for the OA
    ...that contains these objects. It needs to be updated with every release of acedb. The obo file is created from AQL queries of the latest WS. ...hows up in the term info box when selected. Keeping the file updated from acedb and showing this information in the term info box helps during curation as
    10 KB (1,644 words) - 18:48, 13 August 2020
  • WebDev 2009.12.09-Agenda and Minutes
    * GFF and acedb steps mostly complete
    2 KB (370 words) - 17:47, 9 December 2009
  • WS181
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (885 words) - 16:47, 21 December 2011
  • WormBase-Caltech Weekly Calls September 2012
    Migration away from ACEDB? *Scalability - ACEDB does not scale to genome-scale studies
    7 KB (1,074 words) - 17:19, 4 October 2012
  • WS190
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (913 words) - 16:46, 21 December 2011
  • WS169
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (787 words) - 10:56, 21 December 2011
  • WS225
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS225.*.tar.gz - compressed acedb database for new release
    16 KB (1,674 words) - 11:38, 20 April 2011
  • AceDB classes tutorial
    [[Category:AceDB]]
    2 KB (281 words) - 21:51, 11 August 2010
  • WebDev 2016.03.22-Agenda and Minutes
    ...h of the website because it is no longer pulling specific information from AceDB. We will need to remove no-longer-required tests and make new ones to test
    2 KB (242 words) - 15:25, 22 March 2016
  • WBConfCall 2018.06.21-Agenda and Minutes
    ...b? Take home: leave the XREF in datomic for now and do not add new them to acedb.
    4 KB (691 words) - 17:16, 21 June 2018
  • WBConfCall 2021.10.07-Agenda and Minutes
    ...prefer we deprecate/retire Tree Display and remove one more dependency on ACEDB * Todd: these are periodic, recurring issues about depending on ACEDB
    5 KB (855 words) - 08:58, 8 October 2021
  • Specifications for a DAF for gene-disease data
    ...ired(R)<br/>Optional(O)!!Cardinality!!Example!!Definition!!Old DAF column!!Acedb tag!!Required format/Restriction!! ...axon||R||1||taxon:6239||NCBI taxonomic identifier for the organism||13||No acedb tag|| taxon:####
    10 KB (1,599 words) - 18:53, 24 January 2019
  • Paper Pipeline Scripts
    papers cronjob is on the acedb account :
    2 KB (320 words) - 20:59, 12 May 2017
  • WS174
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (938 words) - 10:54, 21 December 2011
  • Hinxton 2015.08- Meeting minutes
    ** Cannot re-implement AceDB's partial case-insensitivity in Datomic. ** GW to try again on acedb.ebi.ac.uk using /nfs/acedb/vol1 (purportedly low-latency storage)
    5 KB (741 words) - 10:57, 21 August 2015
  • WebDev 2010.04.07-Agenda and Minutes
    * builds of late have been slowed by acedb slowdowns
    2 KB (313 words) - 16:52, 7 April 2010
  • WebDev 2010.10.20-Agenda and Minutes
    * AceDB version issue -- need 4.9.39, monthly release; AC uses external server; TH
    2 KB (251 words) - 20:35, 20 October 2010
  • OA forms, tables, scripts, etc
    ...ome/postgres/work/citace_upload/antibody/use_package.pl<br>sym link: /home/acedb/xiaodong/antibody/use_package.pl ||Paper<br>Gene<br>Laboratory<br> || ||Xia ...home/postgres/work/citace_upload/concise/use_package.pl<br>sym link: /home/acedb/kimberly/citace_upload/concise/wrapper.pl and /home/postgres/work/citace_
    20 KB (3,050 words) - 21:01, 19 April 2017
  • Software Life Cycle: 1. Updating The Development Server
    ACEDB : /usr/local/wormbase/acedb <td>Unpack ACeDB</td>
    25 KB (3,632 words) - 03:11, 28 October 2013
  • WS217
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    8 KB (915 words) - 11:10, 21 December 2011
  • WBConfCall 2017-11-16-Agenda and Minutes
    ** Raymond - Issue came from not understanding acedb modeling for datomic conversion.
    2 KB (277 words) - 16:10, 17 November 2017
  • How to build a WormBase Virtual Machine
    --acedb/ ../current_databases/acedb/20GB.vmdk
    5 KB (752 words) - 23:33, 13 August 2010
  • Curation status
    ...eated allele'''||extvariation||afp, cfp, tfp, jfp||variation NS||old: home/acedb/karen/cur_status_sources/vargene_ref.txt; current:?||for paper-allele conne ...sion by genetic or other treatment'''|| genereg ||afp, cfp||postgres||home/acedb/karen/cur_status_sources/regulation_ref.txt||
    6 KB (841 words) - 08:24, 24 October 2014
  • WBConfCall 2015.12.03-Agenda and Minutes
    * ACeDB will certainly be used for at least the next year. * It makes sense to have curation use ACeDB for the time being.
    4 KB (684 words) - 19:43, 5 December 2015
  • Acceptable use policy
    ...that drives WormBase. In addition, the underlying databases at aceserver (Acedb and the Mysql GFF databases) are available for programmatic access (see Min
    2 KB (301 words) - 02:21, 1 April 2012
  • WormBase Release Workflow
    ...machine at OICR. Staging includes mirroring files from Hinxton, unpacking acedb, building BLAST and GFF databases, and dumping annotations.
    2 KB (328 words) - 13:05, 2 June 2014
  • WS222
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS222.*.tar.gz - compressed acedb database for new release
    15 KB (1,647 words) - 10:06, 22 December 2010
  • New GO Progress Report Script
    Input files (available on tazendra in home/acedb/ranjana/GO/Progress_Reports/Test):
    2 KB (322 words) - 18:52, 2 December 2014
  • Linking script pipeline
    * First, a lexicon of entities is formed using the WormBase acedb and postgres databases and author-submitted data. ...'''Transgene''', and '''Variation''' are all formed by querying the latest acedb WormBase release on tazendra, which is updated daily from the Sanger/Hinxto
    14 KB (2,324 words) - 19:51, 9 January 2015
  • Administration:Installing WormBase
    '''acedb group''' ...is the group that will have write privileges to the acedb directory tree. Acedb administrators should be added to this group.
    26 KB (3,522 words) - 19:10, 18 June 2014
  • WS224
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS224.*.tar.gz - compressed acedb database for new release
    15 KB (1,583 words) - 11:13, 21 December 2011
  • Co-op Documentation
    ...bject section contains most of the information related to interacting with ACeDB objects. ===ACeDB===
    11 KB (1,786 words) - 14:31, 17 May 2016
  • WormBase-Caltech Weekly Calls November 2011
    *Lookup if genome in ACEDB; if not, look up gene models in GFF databases *Run AQL queries from a local ACEDB instance for better performance (and fewer time outs)
    4 KB (612 words) - 17:13, 1 December 2011
  • OA for disease term
    ! Order !! Name !! Type !! Required? !! Shows in OA as !! acedb tag !! Postgres table name /home/acedb/ranjana/human_disease/diseaseterm
    8 KB (1,088 words) - 22:59, 29 July 2016
  • Transgene curation pipeline
    0 4 * * * /home/acedb/karen/cronjobs/assign_transgene_IDs.pl 0 4 * * sun cd /home/acedb/karen/transgene; ./use_package.pl
    9 KB (1,321 words) - 21:59, 3 May 2020
  • WormBase Models
    ...r this to be a development area, more for visualisation and clarity of the acedb models. ...document was 1st produced and also some are classes that are necessary for acedb to function correctly.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WBConfCall 2017-07-20-Agenda and Minutes
    ***Datomic database is not available until after the official ACeDB release ...ek build cycle to accommodate having to build Datomic database, as well as ACeDB
    7 KB (1,077 words) - 16:26, 20 July 2017
  • OICR-Configuring the development machine
    acedb/ // The Acedb database (including bin directory) * acedb group
    28 KB (3,957 words) - 19:55, 5 May 2022
  • ModENCODE Analysis & metadata discussion
    ...d the nomenclature we should adopt for ?Analysis/?Condition objects in the AceDB database.
    2 KB (340 words) - 08:50, 24 September 2010
  • WS228
    acedb DIR - Everything needed to generate a local copy of the The - database.WS228.*.tar.gz - compressed acedb database for new release
    14 KB (1,572 words) - 10:37, 11 November 2011
  • WormBase database schema
    The majority of the data stored within WormBase is held in an ACeDb database.
    2 KB (379 words) - 22:06, 10 October 2013
  • WBConfCall 2023.09.21–Agenda and Minutes
    * Stavros - Is Caltech postgres a view of acedb schema * Stavros - acedb harder to maintain, related to WB crashes ?
    9 KB (1,570 words) - 16:36, 21 September 2023
  • WormBase Infrastructure
    * a pool of redundant database servers running AceDB and MySQL ! acedb?
    9 KB (1,103 words) - 19:14, 18 June 2014
  • WBConfCall 2015.08.20-Agenda and Minutes
    A warm welcome to Adam. As he has helped evaluate candidate replacements for AceDB.....he is not a complete stranger. ...l be working with the Hinxton and OICR teams continuing development on the AceDB -> Datomic project and will be continuing from where Thomas left off with t
    6 KB (850 words) - 01:12, 22 August 2015
  • UniProtKB gpad to WormBase .ace
    **/home/acedb/kimberly/citace_upload/go/gpad2ace **for example: /home/acedb/kimberly/citace_upload/go/gpad2ace/2015_February
    5 KB (811 words) - 18:52, 3 November 2015
  • WormBase-Caltech Weekly Calls August 2019
    * Add slim terms into ACEDB? One option * Decided not to store ribbon info (slim terms and term order) in ACEDB, but rather in web code
    5 KB (759 words) - 15:02, 11 September 2019
  • Model changes to capture and consolidate human disease data
    **Disease relevant gene (dis_wbgene), acedb tag: Gene_by_biology//Add for WS278 **Variation (dis_variation), acedb tag: Disease_model_variation
    32 KB (3,649 words) - 20:55, 21 May 2020
  • WBConfCall 2015.02.5-Agenda and Minutes
    ...able to be done through WormMine and still needs curator to pull it out of ACeDB.
    2 KB (321 words) - 16:55, 5 February 2015
  • WS227
    acedb DIR - Everything needed to generate a local copy of the The - database.WS227.*.tar.gz - compressed acedb database for new release
    15 KB (1,738 words) - 11:20, 21 December 2011
  • Using private development sites
    3. All sites use the same Acedb and GFF databases. *Please* contact me before tinkering with them as these
    2 KB (381 words) - 18:42, 17 August 2010
  • WormBase-Caltech Weekly Calls April 2017
    ...omic would take over from ACEDB completely, but it seems we will still use ACEDB for some time for e.g. FMap * Wen will generate numbers for WS254 (resurrect WS254 ACEDB)
    7 KB (1,010 words) - 17:08, 4 May 2017
  • WS223
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS223.*.tar.gz - compressed acedb database for new release
    15 KB (1,610 words) - 11:20, 21 December 2011
  • WS234
    acedb DIR - Everything needed to generate a local copy of the The - database.WS234.*.tar.gz - compressed acedb database for new release
    15 KB (1,653 words) - 10:13, 18 January 2013
  • WS218
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS218.*.tar.gz - compressed acedb database for new release
    15 KB (1,756 words) - 11:21, 21 December 2011
  • Feature Requests
    acedb account on tazendra and I'll mark those as ``yes'' (the papers the acedb account on tazendra, and let me know which postgres tables
    6 KB (1,024 words) - 23:02, 13 August 2010
  • INTRODUCTION
    ...e'' genomic sequences; detailed, user-customized searches with WormMart or AceDB Query Language; batch downloads of many sequences at once; identifying the
    2 KB (365 words) - 00:06, 1 December 2010
  • WS230
    acedb DIR - Everything needed to generate a local copy of the The - database.WS230.*.tar.gz - compressed acedb database for new release
    17 KB (1,950 words) - 09:37, 7 February 2012
  • 2010.05 OICR WebDev Meeting
    ** acedb
    2 KB (280 words) - 19:14, 10 August 2010
  • WS219
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS219.*.tar.gz - compressed acedb database for new release
    15 KB (1,622 words) - 11:11, 21 December 2011
  • WormBase-Caltech Weekly Calls March 2011
    *We will try to generate an ACEDB patch every other month, starting with the Paper class data *Since we use ACEDB, we have to patch WS with .ACE file, or rebuild whole thing
    13 KB (2,097 words) - 22:48, 7 April 2011
  • WS232
    acedb DIR - Everything needed to generate a local copy of the The - database.WS232.*.tar.gz - compressed acedb database for new release
    15 KB (1,729 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls August 2013
    ** /home/acedb/cron/curation_stats/get_daily_curation_stats.pl ** /home/acedb/cron/curation_stats/files/
    5 KB (850 words) - 15:32, 5 September 2013
  • WBConfCall 2013.10.02-Agenda and Minutes
    ** pre-processed tables, since acedb is slow
    3 KB (427 words) - 18:31, 3 October 2013
  • WormBase-Caltech Weekly Calls December 2015
    * There are automated conversion systems being established to convert ACEDB data and models into Datomic * Should the email info come from ACEDB or local Caltech postgres database?
    5 KB (776 words) - 16:50, 7 January 2016
  • Populating dois
    *And you can probably run the script manually by logging on as acedb and pasting :
    3 KB (466 words) - 17:00, 22 July 2014
  • WormBase-Caltech Weekly Calls June 2016
    ...As that had the same initial import timestamp, Wen determined the original ACEDB timestamps for those objects, and Juancarlos is updating the OA entries (cu * Testing instance of citpub ACEDB, single instance to be shared (cannot be used by multiple users simultaneou
    8 KB (1,224 words) - 15:34, 21 July 2016
  • Processing NBP alleles
    * 20151013 /home/acedb/karen/mid_release_scripts/nbp_maryann/parse_maryann.pl has been updated to *Move and rename file onto tazendra to /home/acedb/karen/mid_release_scripts/nbp_maryann/NBP_latest
    6 KB (920 words) - 00:20, 14 October 2015
  • General administration
    === Acedb === Acedb produces two logs. These are both located in the "database" folder of the c
    16 KB (2,589 words) - 20:19, 29 March 2012
  • WS237 Models.wrm
    These were seen to be the only remaining primary attribute classes and acedb does have kernal code expecting some of these tags to be present in the mod
    3 KB (475 words) - 14:53, 19 February 2013
  • Acceptance to first-pass
    * New data goes to the appropriate data curator for acedb object creation.
    3 KB (471 words) - 19:53, 19 April 2012
  • WBConfCall 2017-08-03-Agenda and Minutes
    * Purpose is to remove ACEDB-dependency
    2 KB (378 words) - 16:32, 3 August 2017
  • WS220
    acedb DIR - Everything needed to generate a local copy of the The x) database.WS220.*.tar.gz - compressed acedb database for new release
    16 KB (1,762 words) - 11:10, 21 December 2011
  • WS235
    acedb DIR - Everything needed to generate a local copy of the The - database.WS235.*.tar.gz - compressed acedb database for new release
    15 KB (1,708 words) - 10:14, 18 January 2013
  • WS284
    acedb DIR - Everything needed to generate a local copy of the The - database.WS284.*.tar.gz - compressed acedb database for new release
    17 KB (1,841 words) - 21:54, 11 May 2023
  • WS231
    acedb DIR - Everything needed to generate a local copy of the The - database.WS231.*.tar.gz - compressed acedb database for new release
    16 KB (1,820 words) - 14:15, 13 September 2012

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