Data mining

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Data Model

  1. About the WormBase data model - how data is stored and structured at WormBase
  2. AceDB classes - A comprehensive list of AceDB classes
  3. AceDB classes tutorial -Examples and descriptions of commonly accessed classes at WormBase
  4. GFF2 features - Descriptions of features contained in the WormBase GFF2 genome annotation files

Query Languages

  1. AQL tutorial - Using the AceDB query language, AQL -- DEPRECATED: moved to new site
  2. WQL tutorial - Using the WormBase query language, WQL -- DEPRECATED: moved to new site

WormMine

Link to documentation

WormMart

  1. WormMart

APIs

AcePerl, a Perl interface to AceDB/WormBase

  1. Mining AceDB/WormBase with AcePerl

Bio::DB::GFF

  1. Mining WormBase with Bio::DB::GFF - extract sequence annotations en masse using this Perl module

Miscellaneous

  1. Linking To WormBase
  2. Converting Coordinates between releases
  3. WormBase Identifiers - A quick guide to WormBase object identifiers