Dead-end pages

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  1. Author Person
  2. Automated descriptions for C. briggsae
  3. Automated gene descriptions 2.0
  4. Automation progress
  5. BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART
  6. BASIC PROTOCOL 11: DOWNLOADING A BATCH OF SEQUENCES
  7. BASIC PROTOCOL 12: EXAMINING THE GENOMIC CONTENT OF A CLASSICAL GENETIC INTERVAL
  8. BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
  9. BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
  10. BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
  11. BASIC PROTOCOL 4: EXAMINING A MOLECULAR SEQUENCE IN C. ELEGANS
  12. BASIC PROTOCOL 5: FINDING PROTEIN FEATURES
  13. BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS
  14. BASIC PROTOCOL 7: USING THE GENOME BROWSER
  15. BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS
  16. BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST
  17. BLAST/BLAT Page
  18. Balancers
  19. Balloon Tooltips
  20. Base node configuration - CentOS5
  21. Brugia malayi
  22. Brute force - modencode migration
  23. Building WormMart
  24. Bursaphelenchus xylophilus
  25. C. elegans Community Climate Survey - August 2020
  26. C. elegans Community Mentor Match Program Initial Plan
  27. C. elegans models for human disease in the literature
  28. COMMENTARY
  29. CVS Access To WormBase
  30. Caenorhabditis angaria
  31. Caenorhabditis brenneri
  32. Caenorhabditis briggsae
  33. Caenorhabditis drosophilae
  34. Caenorhabditis elegans
  35. Caenorhabditis japonica
  36. Caenorhabditis remanei
  37. Caenorhabditis species 11
  38. Caenorhabditis species 5
  39. Caenorhabditis species 7
  40. Caenorhabditis species 9
  41. Calls
  42. Ccc.cgi documentation
  43. Cell division
  44. Citace data assignments
  45. Citing and Acknowledging WormBase
  46. CoKo white board meeting
  47. Coding standards
  48. Coko foundation white board meeting
  49. Community Curation
  50. ComparaTutorial
  51. Comparison CGI
  52. Conference call Minutes
  53. Configuring a server to host virtual machines
  54. Contributing Allele Phenotype Connections
  55. Contributing Phenotype Connections
  56. Converting Coordinates between releases
  57. Cosmids/YACs
  58. Creating New Book Objects
  59. Creating Virtual Disks
  60. Creating a tool
  61. Creating a widget
  62. Crem Contig1442 Crem Contig1336 Poss Join
  63. Cronjobs
  64. Curated data types
  65. Curation status
  66. DNA Degradation Pathway
  67. Data Model
  68. Data and display problems of GO annotations in WormBase
  69. Data mining:AQL tutorial
  70. Data mining:WQL tutorial
  71. Data mining:WormMart:Example 5
  72. Data mining:WormMart:Example 6
  73. Datatypes flagged
  74. Death
  75. Design Specs: API
  76. Design Specs: Application Request Flow
  77. Design Specs: Authorization and Authentication
  78. Design Specs: CSS
  79. Design Specs: Configuration setup and 3rd party software install
  80. Design Specs: Database Connectivity
  81. Design Specs: Evidence Handling
  82. Design Specs: GBrowse Integration
  83. Design Specs: Interactivity
  84. Design Specs: Production management
  85. Design Specs: REST web service
  86. Design Specs: Scalability
  87. Design Specs: Session Cleanup
  88. Design Specs: Templates
  89. Detailed curation workflows and search scenarios
  90. Developer notes
  91. Development notes WS163
  92. Development notes WS164
  93. Development notes WS165
  94. Development notes WS166
  95. Development notes WS167
  96. Development notes WS170
  97. Development notes WS171
  98. Development notes WS173
  99. Development workflow - webdev
  100. Documentation and Communication Standards
  101. Doodle Polls for conference call scheduling
  102. Drugs
  103. Editorial policy
  104. Entity classes and problems
  105. Establishing the SVN repository
  106. Evidence Code Ontology
  107. Example Pages
  108. Example marked up papers
  109. Example molecule pages
  110. Expression Cluster
  111. FIGURE(S)
  112. FP curator comments for St.Louis and Sanger structure correction data type
  113. Feature WishList
  114. February 15, 2011
  115. February 22, 2011
  116. Formal development strategy
  117. Fosmids
  118. Further clarification
  119. GAF to .ace file
  120. GBrowseInstallation
  121. GBrowse Administration
  122. GFF2 features
  123. GFF3 Validation
  124. GFF3 features (C. briggsae)
  125. GFF3specProposal
  126. GFF Release Data and Changes
  127. GFF source methods
  128. GO-CAM GPAD
  129. GSA Markup Meeting Notes
  130. Gene - GO Curation Status
  131. Gene Class Descriptions
  132. Gene Expression micropublications
  133. Gene Page
  134. Gene Regulation
  135. General specifications
  136. Generation of VPC's
  137. Genes mentioned along with word in Figure or Table category
  138. Genetics Paper Pipeline
  139. Genome Browser Help
  140. Genome Standards
  141. Genotype
  142. Geographic Displays
  143. Ggi OA
  144. Globodera pallida
  145. Glossary of terms
  146. HOWTO migrate a CGI
  147. Haemonchus contortus
  148. Help Desk During 2011 International Worm Meeting
  149. Help Desk During International Worm Meeting
  150. Heterorhabditis bacteriophora
  151. Hinxton 2015.06- Meeting minutes
  152. Hinxton 2015.07- Meeting minutes
  153. Hinxton 2015.08- Meeting minutes
  154. Hinxton 2016.01- Meeting minutes
  155. Hinxton 2019.01- Meeting minutes
  156. Horrible curation examples
  157. How WormBase writes a concise description
  158. How are the repeats determined?
  159. How to build a WormBase Virtual Machine
  160. How to build a frozen release
  161. INDI
  162. INTERNET RESOURCES
  163. INTRODUCTION
  164. ISB2014 Babbitt
  165. ISB2014 Session2 Systems Biology
  166. ISB2014 Session3 Functional Annotations
  167. ISB2014 Session4 Microbial Informatics
  168. ISB2014 Session5 Data Integration and Sharing
  169. ISB2014 Stein
  170. ISB2014 Workshop4 Big Data Curation
  171. Importing PFAM Images
  172. Importing Protein Structure Data
  173. In book
  174. In vitro flagging
  175. Innate Immunity, Defense Response, MAPK Signaling Pathway
  176. InterMOD meeting jdmswong
  177. InterMine Strategy Meeting: June 7, 2013
  178. InterMine Strategy Meeting: May 14, 2013
  179. InterMine Strategy Meeting: May 21, 2013
  180. InterMine Strategy Meeting: May 29, 2013
  181. InterMine Strategy Meeting: May 9, 2013
  182. Interaction Display in the Gene Page
  183. Invalid PMIDs in postgres and WormBase
  184. January 12, 2010
  185. Javascript libraries
  186. Jdmswong notes
  187. Jdmswong sandbox
  188. Jenkins Checks
  189. Job Openings
  190. Journal first-pass (jfp) postgres table details
  191. Juancarlos
  192. June
  193. KEY REFERENCES
  194. Key publications
  195. LEGO Curation
  196. Lexicon Development Tool
  197. Linking To WormBase
  198. Lists
  199. Log file management and analysis
  200. MacOSX(Leopard)
  201. Mailing lists
  202. Managing Perl Libraries
  203. Managing Perl libraries across nodes
  204. Managing servers hosting virtual machines
  205. Mapped Transgenes
  206. March
  207. Mark Up Work Flow
  208. Mark up policy
  209. May
  210. Meeting Abstracts
  211. Meloidogyne hapla
  212. Meloidogyne incognita
  213. Methods Journals
  214. Micropub Pipeline
  215. Micropublication tracker
  216. Migration
  217. Mining AceDB/WormBase with AcePerl
  218. Mining WormBase with Bio::DB::GFF
  219. Mirror sites and frozen releases
  220. ModENCODE Integration status
  221. Model changes
  222. Molecule model build
  223. Molecule papers
  224. Most wanted web features
  225. Movie
  226. N-Browse Installation & Interaction Data
  227. NBC sign off documentation
  228. New Model Implementation Checklist
  229. Nippostrongylus brasiliensis
  230. Noctua - Upload of WB Manual Annotations
  231. Noctua model curation tracking table
  232. Nomenclature
  233. November 2014 Phenotype2GO Mappings File
  234. Onchocerca volvulus
  235. Optimizing site performance
  236. Orthologs: use cases for searches
  237. Outstanding Model questions
  238. pmid:26412237
  239. Paper ID conversion CGI
  240. Paper Pipeline - To Do List
  241. Paper Pipeline Scripts
  242. Paper Type
  243. Paper editor.cgi code
  244. Papers that use GO - 2015
  245. Person
  246. Phasing out the manual annotations
  247. Phenote .ace citace upload
  248. Phenote .ace dump and citace upload SOP
  249. Phenote .obo files and where they come from
  250. Phenote cgi wish list
  251. Phenotype2GO pipeline SOP
  252. Phenotype Ontology Development
  253. Phenotype micropublications
  254. Pipeline
  255. Populating Species Tag
  256. Populating dois
  257. Postgres Query
  258. Postgres management
  259. Presentations
  260. Pristionchus pacificus
  261. Project Calendar
  262. Project meeting agendas and minutes
  263. Project page for author first pass form
  264. Quick response cheatsheet
  265. RNAi curation
  266. RSS implementation
  267. Regional and Topical Meetings
  268. Related web resources
  269. Relations Ontology
  270. Reporting sequence for RNAi
  271. Request Account
  272. Rnaseq library details
  273. SOP for GO citace and GO consortium data uploads
  274. SPELL
  275. Sentence Saver for Category Seed
  276. Sequence Feature
  277. Session management
  278. Site statistics
  279. Software Life Cycle: 3. QA/QC and Performance Benchmarking
  280. Software Life Cycle: 4. Updating The Production Servers
  281. Specifications for WB gpi file
  282. Specifications for a Community Annotation Form
  283. Specifications for a GAF for gene-disease data
  284. Specifications for data submission to the Alliance
  285. Starting a new Journal
  286. Steinernema carpocapsae
  287. Strain
  288. Strains
  289. Strongyloides ransomi
  290. Strongyloides ratti
  291. Suggested pre-release data checks
  292. TBA
  293. Tasks
  294. Teladorsagia circumcincta
  295. Test and training regions
  296. Testing Form - 20130611
  297. Textpresso-based automated extraction of concise descriptions
  298. Textpresso Central
  299. Textpresso related forms
  300. Tissue Specific Transgene Markers
  301. Topic Curation
  302. Trac installation notes
  303. TransgeneOme import
  304. Transgene Markers
  305. Transgene curation
  306. Trichinella spiralis
  307. Trichuris muris
  308. Type
  309. Type - mapping incoming Type
  310. Type - mapping of current to future Type
  311. Types of Papers in WormBase (and Postgres)
  312. UniProtKB gpad to WormBase .ace
  313. UniProt Paper - Gene - Data Type
  314. Unused evidence
  315. Update Matrix Template
  316. Update Matrix WS205
  317. Update Matrix WS206
  318. Update Matrix WS207
  319. Update Matrix WS208
  320. Update Matrix WS209
  321. Update Matrix WS210
  322. Update Matrix WS211
  323. Update Matrix WS212
  324. Update Matrix WS213
  325. Update Matrix WS214
  326. Update Matrix WS215
  327. Update Matrix WS217
  328. Update Matrix WS220
  329. Update checklist template
  330. Updating Postgres with New WS Information
  331. Updating WormBase
  332. Updating WormMart
  333. UserGuide:Advanced Search
  334. UserGuide:Autocompletion
  335. UserGuide:Batch Downloads
  336. UserGuide:Blast Search
  337. UserGuide:Browse Genome
  338. UserGuide:Cell Search
  339. UserGuide:Definitions for Life Stages
  340. UserGuide:Display Tools
  341. UserGuide:Embryonic Cell/Time Correlation Table 1
  342. UserGuide:Embryonic Stage/Time Correlation Table 2
  343. UserGuide:Expression Search
  344. UserGuide:Expression profile Search
  345. UserGuide:Full Text Journals
  346. UserGuide:Gene Ontology
  347. UserGuide:Gene Ontology Page
  348. UserGuide:Gene Page
  349. UserGuide:Genetic Map
  350. UserGuide:Genome Dumper
  351. UserGuide:How to Obtain Reagents
  352. UserGuide:Interval Search
  353. UserGuide:Life Stage System in WormBase
  354. UserGuide:Marker/Strain Search
  355. UserGuide:Microarray Page
  356. UserGuide:Neurobrowse
  357. UserGuide:Neuron Search
  358. UserGuide:Nomenclature
  359. UserGuide:Person:Lineage
  360. UserGuide:Person Page
  361. UserGuide:RNASeqFPKMGraph
  362. UserGuide:RNAi Search
  363. UserGuide:Reivsed Nomenclature
  364. UserGuide:Release Notes
  365. UserGuide:Revised Nomenclature
  366. UserGuide:Sequence Page
  367. UserGuide:SimpleMine
  368. UserGuide:Simple Search
  369. UserGuide:WormMine
  370. UserGuide:Wormpep file descriptions
  371. UserGuide:ePCR
  372. User Guide/Gene/Phenotype Graph
  373. User Guide/SObA
  374. User Guide/TEA
  375. User Guide:Phenotype
  376. Using CGI-Toggle
  377. Using bitbucket
  378. Using collapsible sections
  379. Using github
  380. Using private development sites
  381. WB-ABM-2013-Agenda
  382. WB:Gene:Cre-her-1
  383. WB:Gene:cap-1
  384. WB:Gene:rgs-6
  385. WB:Gene:uaf-1
  386. WBConfCall 2011.05.19-Agenda and Minutes
  387. WBConfCall 2011.07.21-Agenda and Minutes
  388. WBConfCall 2011.11.03-Agenda and Minutes
  389. WBConfCall 2011.11.17-Agenda and Minutes
  390. WBConfCall 2011.12.15-Agenda and Minutes
  391. WBConfCall 2012.02.05-Agenda and Minutes
  392. WBConfCall 2012.02.16-Agenda and Minutes
  393. WBConfCall 2012.03.01-Agenda and Minutes
  394. WBConfCall 2012.03.15-Agenda and Minutes
  395. WBConfCall 2012.04.05-Agenda and Minutes
  396. WBConfCall 2012.05.03-Agenda and Minutes
  397. WBConfCall 2012.05.17-Agenda and Minutes
  398. WBConfCall 2012.06.07-Agenda and Minutes
  399. WBConfCall 2012.06.21-Agenda and Minutes
  400. WBConfCall 2012.07.019-Agenda and Minutes
  401. WBConfCall 2012.07.05-Agenda and Minutes
  402. WBConfCall 2012.08.02-Agenda and Minutes
  403. WBConfCall 2012.08.16-Agenda and Minutes
  404. WBConfCall 2012.09.06-Agenda and Minutes
  405. WBConfCall 2012.09.20-Agenda and Minutes
  406. WBConfCall 2012.10.03-Agenda and Minutes
  407. WBConfCall 2012.10.17-Agenda and Minutes
  408. WBConfCall 2012.10.18-Agenda and Minutes
  409. WBConfCall 2012.11.01-Agenda and Minutes
  410. WBConfCall 2013.01.10-Agenda and Minutes
  411. WBConfCall 2013.01.24-Agenda and Minutes
  412. WBConfCall 2013.02.07-Agenda and Minutes
  413. WBConfCall 2013.02.21-Agenda and Minutes
  414. WBConfCall 2013.03.07-Agenda and Minutes
  415. WBConfCall 2013.03.21-Agenda and Minutes
  416. WBConfCall 2013.04.04-Agenda and Minutes
  417. WBConfCall 2013.04.18-Agenda and Minutes
  418. WBConfCall 2013.05.02-Agenda and Minutes
  419. WBConfCall 2013.06.06-Agenda and Minutes
  420. WBConfCall 2013.06.20-Agenda and Minutes
  421. WBConfCall 2013.07.18-Agenda and Minutes
  422. WBConfCall 2013.08.01-Agenda and Minutes
  423. WBConfCall 2013.08.15-Agenda and Minutes
  424. WBConfCall 2013.09.05-Agenda and Minutes
  425. WBConfCall 2013.09.19-Agenda and Minutes
  426. WBConfCall 2013.10.02-Agenda and Minutes
  427. WBConfCall 2013.10.17-Agenda and Minutes
  428. WBConfCall 2013.12.05-Agenda and Minutes
  429. WBConfCall 2013.12.19-Agenda and Minutes
  430. WBConfCall 2014.01.09-Agenda and Minutes
  431. WBConfCall 2014.01.23-Agenda and Minutes
  432. WBConfCall 2014.02.06-Agenda and Minutes
  433. WBConfCall 2014.02.20-Agenda and Minutes
  434. WBConfCall 2014.03.06-Agenda and Minutes
  435. WBConfCall 2014.03.20-Agenda and Minutes
  436. WBConfCall 2014.04.03-Agenda and Minutes
  437. WBConfCall 2014.04.17-Agenda and Minutes
  438. WBConfCall 2014.05.01-Agenda and Minutes
  439. WBConfCall 2014.06.05-Agenda and Minutes
  440. WBConfCall 2014.06.19-Agenda and Minutes
  441. WBConfCall 2014.07.03-Agenda and Minutes
  442. WBConfCall 2014.07.17-Agenda and Minutes
  443. WBConfCall 2014.07.31-Agenda and Minutes
  444. WBConfCall 2014.09.03-Agenda and Minutes
  445. WBConfCall 2014.09.18-Agenda and Minutes
  446. WBConfCall 2014.10.16-Agenda and Minutes
  447. WBConfCall 2014.11.06-Agenda and Minutes
  448. WBConfCall 2014.11.13-Agenda and Minutes
  449. WBConfCall 2014.12.18-Agenda and Minutes
  450. WBConfCall 2014.12.4-Agenda and Minutes
  451. WBConfCall 2015.01.15-Agenda and Minutes
  452. WBConfCall 2015.01.22-Agenda and Minutes
  453. WBConfCall 2015.02.19-Agenda and Minutes
  454. WBConfCall 2015.02.5-Agenda and Minutes
  455. WBConfCall 2015.03.05-Agenda and Minutes
  456. WBConfCall 2015.03.19-Agenda and Minutes
  457. WBConfCall 2015.04.02-Agenda and Minutes
  458. WBConfCall 2015.04.16-Agenda and Minutes
  459. WBConfCall 2015.05.07-Agenda and Minutes
  460. WBConfCall 2015.05.21-Agenda and Minutes
  461. WBConfCall 2015.06.04-Agenda and Minutes
  462. WBConfCall 2015.06.17-Agenda and Minutes
  463. WBConfCall 2015.07.02-Agenda and Minutes
  464. WBConfCall 2015.07.16-Agenda and Minutes
  465. WBConfCall 2015.07.30-Agenda and Minutes
  466. WBConfCall 2015.08.06-Agenda and Minutes
  467. WBConfCall 2015.08.20-Agenda and Minutes
  468. WBConfCall 2015.09.03-Agenda and Minutes
  469. WBConfCall 2015.09.17-Agenda and Minutes
  470. WBConfCall 2015.10.01-Agenda and Minutes
  471. WBConfCall 2015.10.15-Agenda and Minutes
  472. WBConfCall 2015.11.05-Agenda and Minutes
  473. WBConfCall 2015.11.19-Agenda and Minutes
  474. WBConfCall 2016.01.07-Agenda and Minutes
  475. WBConfCall 2016.01.21-Agenda and Minutes
  476. WBConfCall 2016.02.18-Agenda and Minutes
  477. WBConfCall 2016.03.17-Agenda and Minutes
  478. WBConfCall 2016.04.07-Agenda and Minutes
  479. WBConfCall 2016.04.21-Agenda and Minutes
  480. WBConfCall 2016.05.05-Agenda and Minutes
  481. WBConfCall 2016.06.02-Agenda and Minutes
  482. WBConfCall 2016.06.16-Agenda and Minutes
  483. WBConfCall 2016.07.07-Agenda and Minutes
  484. WBConfCall 2016.07.21-Agenda and Minutes
  485. WBConfCall 2016.08.04-Agenda and Minutes
  486. WBConfCall 2016.08.18-Agenda and Minutes
  487. WBConfCall 2016.09.01-Agenda and Minutes
  488. WBConfCall 2016.09.15-Agenda and Minutes
  489. WBConfCall 2016.10.06-Agenda and Minutes
  490. WBConfCall 2016.10.20-Agenda and Minutes
  491. WBConfCall 2016.11.03-Agenda and Minutes
  492. WBConfCall 2016.11.17-Agenda and Minutes
  493. WBConfCall 2016.12.01-Agenda and Minutes
  494. WBConfCall 2016.12.15-Agenda and Minutes
  495. WBConfCall 2017-04-06-Agenda and Minutes
  496. WBConfCall 2017-04-20-Agenda and Minutes
  497. WBConfCall 2017-05-04-Agenda and Minutes
  498. WBConfCall 2017-05-18-Agenda and Minutes
  499. WBConfCall 2017-06-01-Agenda and Minutes
  500. WBConfCall 2017-06-15-Agenda and Minutes

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