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  • February 22, 2011
    = Agenda and Notes - BioGRID and WB interaction meeting.= ;item 1 - Mapping of Physical interaction terms/types between WB and BioGRID.
    1 KB (240 words) - 22:36, 22 February 2011
  • WBConfCall 2015.04.16-Agenda and Minutes
    == WS249 model == === ?Interaction model (Chris) ===
    1 KB (198 words) - 17:01, 16 April 2015
  • AceDB classes
    ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:
    4 KB (568 words) - 11:06, 23 May 2011
  • WormBase Model:WBProcess
    [[WormBase Models]] == Model ==
    3 KB (275 words) - 01:07, 6 February 2014
  • December 15, 2010
    :: Remove interaction based phenotypes from existing tables-→ new table ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section)
    3 KB (475 words) - 22:50, 17 December 2010
  • WormBase Model:Database field
    [[WormBase Models]] ?Interaction
    700 bytes (98 words) - 09:44, 4 October 2010
  • February 15, 2011
    = Agenda - BioGRID and WB interaction meeting.= ;item 2 - Mapping of interaction terms between WB and BioGRID. (Attached Excel and PowerPoint)
    3 KB (391 words) - 22:13, 22 February 2011
  • WormBase Model:Interaction
    [[WormBase Models]] == Old Model ==
    12 KB (1,431 words) - 19:06, 20 March 2012
  • WBConfCall 2012.05.17-Agenda and Minutes
    == 1. Life_stage model change == Life_stage model change proposal:
    1 KB (205 words) - 16:55, 17 May 2012
  • WormBase Model:Phenotype
    [[WormBase Models]] == Model ==
    2 KB (200 words) - 08:23, 5 October 2010
  • WormBase Model:RNAi
    [[WormBase Models]] == Model ==
    3 KB (312 words) - 15:14, 15 July 2010
  • WormBase Model:Molecule
    [[WormBase Models]] Interaction ?Interaction XREF Molecule_interactor // Chris WS244
    6 KB (543 words) - 23:29, 15 March 2016
  • WormBase-Caltech Weekly Calls August 2011
    Physical Interaction model *Separating out from general "Interaction" model
    4 KB (650 words) - 17:08, 1 September 2011
  • WBConfCall 2012.06.21-Agenda and Minutes
    ...cycle. Please review the file [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.376&root=ensembl&view=markup models.wrm] in the ?Interaction
    4 KB (503 words) - 08:30, 22 June 2012
  • UniProt Paper - Gene - Data Type
    PPI (Protein-Protein Interaction) New pipeline proposal is to retrieve information from WormBase ftp site, which will be updated with each release.
    4 KB (556 words) - 12:45, 21 May 2019
  • WormBase-Caltech Weekly Calls January 2012
    Textpresso Interaction Sentences *Need to discuss what sentences should be kept as adequate evidence of interaction and placed in remarks
    5 KB (847 words) - 17:49, 1 March 2012
  • WormBase-Caltech Weekly Calls December 2014
    ...reviously only with a text description are getting updated to fit the data model === Interaction-Gene associations ===
    4 KB (633 words) - 19:09, 6 January 2015
  • WormBase-Caltech Weekly Calls February 2011
    *Should we take minutes of Caltech WormBase group meetings and send around? *WormBase-wide conference call twice per month
    8 KB (1,282 words) - 17:08, 7 July 2011
  • AceOjbect Redesign Page
    == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.
    12 KB (1,559 words) - 18:14, 15 June 2011
  • WormBase-Caltech Weekly Calls July 2014
    === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model
    4 KB (622 words) - 16:47, 6 August 2014
  • WormBase Model:Paper
    [[WormBase Models]] == Model ==
    5 KB (471 words) - 16:07, 4 October 2010
  • WormBase-Caltech Weekly Calls June 2012
    **Chris will add all model changes proposed for WS233 **?Interaction model "Rearrangement" tag needs an XREF and ?Rearrangement model needs an "Interactor" tag
    6 KB (983 words) - 18:02, 12 July 2012
  • WBConfCall 2018.06.21-Agenda and Minutes
    * http://wiki.wormbase.org/index.php/2018_Advisory_Board_Meeting *?RO_term proposal sent to models@wormbase list
    4 KB (691 words) - 17:16, 21 June 2018
  • WormBase-Caltech Weekly Calls February 2012
    EPIC data into WormBase *Need to modify model and display for data
    7 KB (1,070 words) - 17:47, 1 March 2012
  • WormBase Model:Feature
    [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa
    4 KB (394 words) - 08:39, 16 September 2014
  • WormBase-Caltech Weekly Calls February 2015
    * What implications does this have for the WormBase Ontology Browser? === Physical Interaction Curation ===
    8 KB (1,120 words) - 16:19, 5 March 2015
  • WormBase-Caltech Weekly Calls December 2011
    Interaction model WormBase meeting announcement
    6 KB (903 words) - 16:37, 5 January 2012
  • WormBase Model:Transgene
    [[WormBase Models]] ==Updated model for WS245==
    13 KB (1,341 words) - 20:12, 22 September 2015
  • WBConfCall 2012.02.16-Agenda and Minutes
    ==== Unified Interaction model - Chris & Kimberly ==== * PaulD: The model is OK but is the web capable of displaying it?
    5 KB (800 words) - 10:09, 17 February 2012
  • WormBase-Caltech Weekly Calls March 2012
    *WormBase curates phenotypes, pathways, etc. *WormBase Process curation could really benefit from GO's adoption of this strategy
    7 KB (1,019 words) - 20:58, 12 April 2012
  • WormBase-Caltech Weekly Calls June 2011
    *Make link on WormBase homepage *Will add note to site about how the model may be integrated into WormBase
    5 KB (752 words) - 17:07, 7 July 2011
  • WormBase-Caltech Weekly Calls November 2011
    *WormBase communicate/work with DCC personnel for data wrangling during post-DCC era? *Wei wei asking about how to update with WormBase
    4 KB (612 words) - 17:13, 1 December 2011
  • WormBase-Caltech Weekly Calls March 2015
    === GO data model change === * Worm pick holders (pencil grips) with WormBase logos; can they be printed on?
    7 KB (1,058 words) - 15:32, 2 April 2015
  • WBConfCall 2021.07.01-Agenda and Minutes
    Ticket: https://github.com/WormBase/website/issues/8296 Issue: Genetic Map tool down with the following error: Caught exception in WormBase::Web::Controller::Tools->tools "Could not connect to database acedb _WS280,
    2 KB (347 words) - 14:07, 2 July 2021
  • WormBase-Caltech Weekly Calls April 2012
    **Performs similar to WormBase **Todd has made progress with getting Intermine for WormBase
    7 KB (1,158 words) - 17:20, 3 May 2012
  • 20141022 - Phenotype2GO Pipeline
    ...arize how the Phenotype2GO-based GO annotations will be handled for future WormBase builds and GO uploads. ...ting for a genetic interaction. To distinguish these, can we include the ?Interaction ID in the With/From column along with the WBRNAi and WBPhenotype IDs?
    7 KB (1,164 words) - 17:54, 19 February 2015
  • WBConfCall 2012.04.19-Agenda and Minutes
    == 1. Model changes (Hinxton) == 1a) Variation model sign off
    7 KB (1,182 words) - 13:50, 20 April 2012
  • WormBase-Caltech Weekly Calls September 2013
    *What would WormBase look like without any manually curated data? === Interaction changes ===
    8 KB (1,225 words) - 16:33, 3 October 2013
  • WormBase-Caltech Weekly Calls March 2014
    * ?Construct model === ?Construct model ===
    8 KB (1,218 words) - 17:46, 2 April 2014
  • WormBase Model:Gene
    [[WormBase Models]] == Model ==
    7 KB (712 words) - 10:40, 4 October 2010
  • WormBase-Caltech Weekly Calls May 2011
    Ranjana - Preplanning WormBase side meetings at IWM? *Two Wormbase Plenary talks
    9 KB (1,302 words) - 16:38, 2 June 2011
  • WormBase-Caltech Weekly Calls October 2011
    *Yuling should contact FlyBase to make sure they're OK, once he has WormBase SVM working Physical interaction model
    7 KB (1,064 words) - 19:12, 3 November 2011
  • Gene Interaction/archive
    =Interaction Curation= ===upload Gary and Chris RNAi-based interaction objects into OA===
    50 KB (5,228 words) - 15:10, 21 July 2017
  • WormBase-Caltech Weekly Calls April 2011
    Transgene Model *Murky genetic interaction curation?
    7 KB (1,103 words) - 18:28, 5 May 2011
  • WS160
    New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 http://wwwdev.sanger.ac.uk/Projects/C_elegans/WORMBASE
    6 KB (706 words) - 10:50, 21 December 2011
  • WormBase Models
    = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WS289
    New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!
    16 KB (1,733 words) - 21:55, 11 May 2023
  • WormBase-Caltech Weekly Calls September 2015
    ...a testing environment for curators/users. we'll have to rely on juancarlos.wormbase.org as cost/benefit analysis is unfavourable to consider other options. === Phentoype-association file: Attributing phenotypes to genes via genetic interaction ===
    6 KB (906 words) - 21:38, 30 September 2015
  • WormBase-Caltech Weekly Calls July 2015
    * Wen will make the model change proposal * Many authors want to share and make links to their database/website via WormBase
    10 KB (1,464 words) - 17:09, 13 August 2015
  • WS284
    New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)
    17 KB (1,841 words) - 21:54, 11 May 2023
  • WormBase-Caltech Weekly Calls October 2013
    === WormBase Ontology Browser (WOBr) === === ?Expr_pattern and ?Movie model changes ===
    13 KB (1,983 words) - 16:40, 7 November 2013
  • WormBase-Caltech Weekly Calls May 2014
    === WormBase Ontology Browser (WOBr) === * http://juancarlos.wormbase.org/tools/ontology_browser
    8 KB (1,234 words) - 12:36, 4 June 2014
  • WormBase-Caltech Weekly Calls March 2013
    *Prepopulation: Display all (key?) experimental info on gene from WormBase, some Textpresso info like "ABC-1 encodes..." Genetic Interaction Ontology
    7 KB (1,047 words) - 15:34, 4 April 2013
  • WBConfCall 2013.11.07-Agenda and Minutes
    [[WS241_Models.wrm | WS241 model details]] * ?Interaction and ?Feature models - linking tags changed
    8 KB (1,246 words) - 15:52, 12 November 2013
  • Topic pages
    **process pages will dissect the chapters and link them to entities in WormBase, * Gene interaction networks (N-browse view?)
    20 KB (3,088 words) - 19:17, 13 August 2020
  • WormBase-Caltech Weekly Calls May 2013
    *Dumping process changes outlined [https://docs.google.com/a/wormbase.org/document/d/1nnuQY9OfV2VsBORj01ocoC985-5kOgxYCGOAZDeeKLQ/edit?pli=1 here *****JD started a [http://wiki.wormbase.org/index.php/WormMine Wiki Page] for documentation
    6 KB (864 words) - 15:32, 6 June 2013
  • Gene Interaction
    Archived Interaction documentation may be found [[Gene_Interaction/archive | here]] ==Interaction Curation==
    53 KB (6,521 words) - 20:51, 7 March 2019
  • Old pipeline for disease data
    '''Field 4 Experimental model for (dis_humandoid):''' <br/ > '''Field 11 Last Updated for Exp Model (dis_lastupdateexpmod):''' <br/ >
    14 KB (2,085 words) - 20:27, 7 July 2022
  • WBConfCall 2013.11.21-Agenda and Minutes
    Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]
    6 KB (909 words) - 21:56, 21 November 2013
  • WormBase Literature Curation Workflow
    =WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model
    9 KB (1,174 words) - 18:30, 29 August 2012
  • WormBase Model:Gene cluster
    [[WormBase Models]] == Model ==
    15 KB (1,645 words) - 18:54, 23 January 2014
  • WS175
    New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes
    6 KB (680 words) - 10:54, 21 December 2011
  • Software Life Cycle: 1. Updating The Development Server
    https://docs.google.com/a/wormbase.org/document/d/1oPpj8d5gibUc-gpUZorl6ETT5baE6mp-v2bMedKauiA/edit# This document describes the process of staging a new release of WormBase on the development server.
    25 KB (3,632 words) - 03:11, 28 October 2013
  • Evidence Code Ontology
    ...ontology/evidenceontology The Evidence and Conclusion Ontology] is used in WormBase to record evidence used for assertions in curation data models. ...ence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.
    6 KB (834 words) - 17:56, 15 June 2020
  • WormBase-Caltech Weekly Calls April 2014
    * Testing at juancarlos.wormbase.org (from there go to Tools > Ontology Browser) ** May be a good tool for displaying TF-target gene interaction display (vs. Cytoscape)
    10 KB (1,474 words) - 15:54, 30 April 2014
  • WormBase-Caltech Weekly Calls October 2020
    ...current production release ONTOLOGY directory: ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/ONTOLOGY/ ...e suggestion for the Alliance is to create a description based on a GO-CAM model
    6 KB (861 words) - 19:23, 5 November 2020
  • WormBase-Caltech Weekly Calls February 2014
    ** model change to put topics in hierarchical structure. http://www.wormbase.org/tools/wormmine/template.do?name=Anatomy_LS_Genes&scope=all
    10 KB (1,485 words) - 18:08, 5 March 2014
  • WormBase-Caltech Weekly Calls February 2018
    * WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT) * Orthology synchrony is a challenge; WormBase and FlyBase may need to pay special attention to orthology calls and discre
    12 KB (1,809 words) - 16:33, 1 March 2018
  • WBConfCall 2018.03.01-Agenda and Minutes
    == WormBase SAB Meeting Date == * [https://github.com/WormBase/website/issues/6213 SNPs in specific genomic regions in Hawaiian C. elegans
    4 KB (574 words) - 01:54, 2 March 2018
  • WormBase Model:Variation
    [[WormBase Models]] == Model ==
    8 KB (853 words) - 23:50, 16 April 2014
  • WBConfCall 2021.02.18-Agenda and Minutes
    * WBPaper00026596.ce.mr.csv content incorrect: https://github.com/WormBase/website/issues/8101 **Alliance/Future of WormBase
    3 KB (511 words) - 18:54, 18 February 2021
  • WS231
    New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    16 KB (1,820 words) - 14:15, 13 September 2012
  • Migration
    -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi
    16 KB (1,576 words) - 17:44, 16 August 2010
  • WormBase-Caltech Weekly Calls March 2018
    * Wen considering adding interaction data to SimpleMine ** Want to indicate, for a query gene, genes for which multiple interaction types have been observed
    11 KB (1,703 words) - 15:27, 5 April 2018
  • WormMine
    [http://intermine.wormbase.org/tools/wormmine/begin.do WormMine] [https://github.com/WormBase/intermine WormMine Github]
    15 KB (2,088 words) - 16:16, 15 October 2020
  • WormBase-Caltech Weekly Calls February 2013
    Binary vs. Non-binary interaction display *Cytoscape and interaction table are only displaying interactions as binary interactions, regardless o
    8 KB (1,161 words) - 16:34, 7 March 2013
  • Working Group:Sequence Features
    ** See github ticket 2867 https://github.com/WormBase/website/issues/2867#issuecomment-48041365 *** How many new objects did you add to WormBase
    23 KB (3,248 words) - 12:58, 22 September 2014
  • Gene Regulation
    == Interaction Model as of WS231 == ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated.
    59 KB (8,367 words) - 22:00, 14 December 2018
  • WBConfCall 2018.07.19-Agenda and Minutes
    ...to be incorporated (BioID, APEX, cofractionation) – perhaps as part of an interaction viewer. * The interaction browser should have a link to Cytoscape/GeneMania for deeper interrogation
    11 KB (1,649 words) - 16:10, 19 July 2018
  • WS217
    New release of WormBase WS217, Wormpep217 and Wormrna217 Wed Jul 28 09:25:17 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule
    8 KB (915 words) - 11:10, 21 December 2011
  • WormBase-Caltech Weekly Calls December 2012
    *Icons on genes indicating drug interaction, for example WormBase GO progress report
    9 KB (1,339 words) - 19:02, 31 January 2013
  • WS232
    New release of WormBase WS232 WS232 was built by Michael Paulini [michael.paulini@wormbase.org]
    15 KB (1,729 words) - 14:15, 13 September 2012
  • WS195
    ...r><br>Release notes on the web:<br>-------------------------<br>http://www.wormbase.org/wiki/index.php/Release_Schedule<br><br>Genome sequence composition:<br> ...open your database, e.g.<br>&nbsp;&nbsp;&nbsp; type 'xace /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more informatio
    11 KB (1,614 words) - 16:52, 21 December 2011
  • WormBase-Caltech Weekly Calls August 2012
    ***Integrated interaction model, genetic interaction ontology ***Need to update Gene expression model to accommodate Epic dataset (John Murray), 3D movies (Bill Mohler), and sin
    12 KB (1,878 words) - 15:55, 6 September 2012
  • WormBase-Caltech Weekly Calls November 2013
    * Citace upload deadline will be 6pm Monday, November 25th (added to WormBase calendar) * We will want to provide a public notice (likely via the WormBase blog) about what topic we have focused on for that release of the database/
    10 KB (1,664 words) - 17:02, 4 December 2013
  • WS223
    New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    15 KB (1,610 words) - 11:20, 21 December 2011
  • WormBase-Caltech Weekly Calls September 2016
    * adding a Community_curator tag or Curator tag in the Expression model to acknowledge the community curators that annotated/will annotate the data * for the records- documentation on the import here: http://wiki.wormbase.org/index.php/TransgeneOme_import
    9 KB (1,490 words) - 15:35, 6 October 2016
  • WS221
    New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    17 KB (1,758 words) - 16:47, 21 December 2011
  • WS222
    New release of WormBase WS222, Wormpep222 and Wormrna222 Mon Dec 20 12:07:08 GMT 2010 WS222 was built by Michael Paulini (michael.paulini@wormbase.org)
    15 KB (1,647 words) - 10:06, 22 December 2010
  • WS228
    New release of WormBase WS228 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    14 KB (1,572 words) - 10:37, 11 November 2011
  • WS174
    http://www.wormbase.org/wiki/index.php/Release_notes Confirmed introns not in a CDS gene model;
    8 KB (938 words) - 10:54, 21 December 2011
  • WS227
    New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,738 words) - 11:20, 21 December 2011
  • WormBase-Caltech Weekly Calls July 2013
    *We should be able to start configuring for WormBase at that point *Gary will propose appropriate model changes (e.g. Add "silencer" and "enhancer" to method for GBrowse display)
    7 KB (1,059 words) - 15:37, 1 August 2013
  • WS225
    New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    16 KB (1,674 words) - 11:38, 20 April 2011
  • RNAi/archive
    ...ing author; for a list of all labs' two-letter codes look here: http://www.wormbase.org/db/misc/laboratory?name=*;class=laboratory), date of publication (accep ...g), Phenotype observed (or not_observed), Gene Regulation objects, Genetic Interaction objects, species, and general remarks about the experiment.
    47 KB (7,989 words) - 23:40, 1 September 2015
  • WS218
    New release of WormBase WS218, Wormpep218 and Wormrna218 Tue Aug 24 genomes DIR - contains a sub dir for each WormBase species with
    15 KB (1,756 words) - 11:21, 21 December 2011
  • WS224
    New release of WormBase WS224, Wormpep224 and Wormrna224 Fri Mar 4 14:58:13 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    15 KB (1,583 words) - 11:13, 21 December 2011
  • WS234
    New release of WormBase WS234 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,653 words) - 10:13, 18 January 2013
  • WormBase-Caltech Weekly Calls May 2017
    * GO-CAM (Gene Ontology - Causal Activity Model(ing)) ...rds, tool could pull up all relevant annotations to help start with GO CAM model building
    8 KB (1,229 words) - 15:31, 1 June 2017
  • WormBase-Caltech Weekly Calls January 2013
    *We should make an announcement on the main WormBase page that WormMart will remain at WS220 and Intermine will replace it *Mark Blaxter offered to donate his Brugia database into WormBase
    10 KB (1,553 words) - 18:04, 7 February 2013
  • Tasks in Progress
    **Documenting elements of WormBase workflow to ease transition for new staff and keep track of changes made **Added information and links for getting started with WormBase
    29 KB (4,254 words) - 20:25, 27 April 2012
  • WormBase-Caltech Weekly Calls June 2019
    * Andy asked about protocol pages at WormBase? ...interface with those existing resources to link to relevant protocols from WormBase (and WormBook)
    8 KB (1,121 words) - 14:01, 15 July 2019
  • WormBase-Caltech Weekly Calls July 2011
    *WormBase - Bitbucket, GitHub (can commit code) *Is WormBase interested connecting to it?
    7 KB (1,117 words) - 16:39, 4 August 2011
  • WormBase-Caltech Weekly Calls June 2016
    * Wen will create ticket to create wormbase.org URL * Working on mapping fosmids to latest release of WormBase
    8 KB (1,224 words) - 15:34, 21 July 2016
  • WS220
    New release of WormBase WS220, Wormpep220 and Wormrna220 Mon Oct 25 13:22:36 BST 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    16 KB (1,762 words) - 11:10, 21 December 2011
  • WS235
    New release of WormBase WS235 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,708 words) - 10:14, 18 January 2013
  • WS233
    New release of WormBase WS233 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (2,002 words) - 14:17, 13 September 2012
  • WormBase-Caltech Weekly Calls May 2021
    * Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s) ...ki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase
    5 KB (670 words) - 15:31, 3 June 2021
  • Antibody
    ==Antibody Model== Interactor ?Interaction
    21 KB (2,888 words) - 19:58, 9 April 2021
  • WBConfCall 2014.07.03-Agenda and Minutes
    http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.404&root=ensembl&view=markup 3) Interaction class - Chris
    15 KB (2,374 words) - 16:00, 17 July 2014
  • WormBase-Caltech Weekly Calls January 2018
    * Eppendorf tube openers with WormBase logo? *[http://wiki.wormbase.org/index.php/First-pass_flagging_pipelines#Author_first-pass_form_revision
    12 KB (1,930 words) - 17:12, 1 February 2018
  • Transgenes
    ==Model Changes== Interactor ?Interaction
    29 KB (4,575 words) - 16:23, 3 March 2022
  • WS219
    New release of WormBase WS219, Wormpep219 and Wormrna219 Tue Oct 5 16:04:14 BST 2010 WS219 was built by [Michael Paulini (michael.paulini@wormbase.org)]
    15 KB (1,622 words) - 11:11, 21 December 2011
  • WS226
    New release of WormBase WS226 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    21 KB (2,346 words) - 11:15, 21 December 2011
  • WS230
    New release of WormBase WS230 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (1,950 words) - 09:37, 7 February 2012
  • WormBase-Caltech Weekly Calls January 2015
    Main outline [https://docs.google.com/a/wormbase.org/document/d/1l6pExlCMI88pi_-djk8jt7IzNsMDV-nIEY9Z1gBNh-A/edit here]- not *Gene Function and Interaction google docs (Chris, Gary S., Karen, Kimberly)
    10 KB (1,453 words) - 18:52, 4 February 2015
  • WormBase-Caltech Weekly Calls April 2019
    * Make modification to ACEDB model? ...ence is held at Université de Montréal on June 2-5, 2019 and will focus on Model systems in cancer research (https://www.fourwav.es/view/1174/info/). The C.
    11 KB (1,676 words) - 15:28, 2 May 2019
  • WormBase-Caltech Weekly Calls September 2014
    * Physical Interaction Curation - a relatively new data type for us, discuss existing data, strate * Wen needs a couple days from model tagging to prepare the final upload
    6 KB (857 words) - 16:01, 2 October 2014
  • WormBase-Caltech Weekly Calls July 2020
    * Will work on GO-CAMs and build a relevant model(s) ...term, disease_model_annotation, transgene, construct, molecule, wbprocess, interaction
    9 KB (1,369 words) - 22:47, 5 August 2020
  • WormBase-Caltech Weekly Calls September 2012
    **We could extend the WormBase web app to interact with SPELL data ****WormBase person would check on case-by-case basis the accuracy of data (e.g. express
    7 KB (1,074 words) - 17:19, 4 October 2012
  • WS229
    New release of WormBase WS229 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (1,988 words) - 11:15, 21 December 2011
  • Progress Report 2011
    ='''WormBase Gene Ontology Progress Report, December 2011'''= Developer, WormBase, Caltech, Pasadena, CA.
    13 KB (1,830 words) - 16:40, 13 December 2012
  • WormBase-Caltech Weekly Calls May 2018
    *[https://github.com/WormBase/website/issues/6423 Not sure if this falls under content....] *Working on new model for importing RO terms into WormBase
    14 KB (2,226 words) - 15:31, 7 June 2018
  • RNAi
    == RNAi Data Model == This is the ?RNAi data model as of WormBase Release WS251:
    29 KB (4,152 words) - 20:29, 30 July 2019
  • WS244 Models.wrm
    == Model changes for WS244 == * This cycle we see 5 model changes in 4 classes:
    235 KB (23,325 words) - 10:33, 3 July 2014
  • WormBase-Caltech Weekly Calls June 2020
    * Can have maximum of 3 people in WormBase rooms at a time; probably best to only allow one person per WB room * We plan to eventually connect strains to genotypes, but need model changes and curation effort to sort out
    8 KB (1,228 words) - 20:57, 14 July 2020
  • Gene Ontology
    ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
    30 KB (3,904 words) - 18:45, 13 May 2020
  • Molecule
    ...used for high-throughput screening analysis of the gene function, protein interaction, cellular processing, biochemical pathways, or other chemical interactions. ==Model==
    50 KB (6,966 words) - 19:15, 13 August 2020
  • WormBase-Caltech Weekly Calls 2023
    * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).
    36 KB (4,994 words) - 17:27, 14 February 2024
  • COMMENTARY
    ...y </nowiki>''C. elegans'' gene in the published literature can be found in WormBase, by reference either to genes or to cell or tissue types. There are results ...elopers group actively invites suggestions for improvement from users, and WormBase's source code is freely available for local installation and improvement.
    30 KB (4,765 words) - 20:03, 11 August 2010
  • Concise Descriptions
    http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log ...ng the format Exprnnnn where n is a number; these values correspond to the WormBase ID of the Expr_pattern object; individual entries are comma-separated.
    47 KB (6,852 words) - 04:27, 8 December 2020
  • UserGuide:Reivsed Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,520 words) - 11:51, 21 October 2015
  • UserGuide:Revised Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,514 words) - 09:48, 23 October 2015
  • ISB2014 Stein
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • ISB2014 Session5 Data Integration and Sharing
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • Pictures
    ==Picture Data Model== ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.
    120 KB (19,719 words) - 16:44, 20 October 2023
  • Searching WormBase for Information About C. elegans (Wiley)
    ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of C. briggsae and C. remanei, two cl ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).
    103 KB (16,375 words) - 23:39, 30 November 2010
  • Expression Pattern
    Current model (WS280) The field Microarray_results has been added to the model for WS247. This will allow mapping to gene for other species (remanei, brig
    104 KB (15,303 words) - 19:39, 11 May 2023
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