User contributions
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Jump to navigationJump to search- 12:13, 5 January 2010 diff hist +37 N Using the Paper Editor New page: WBPaper00030839 - empty gene objects?
- 12:13, 5 January 2010 diff hist +18 Paper Pipeline
- 12:09, 5 January 2010 diff hist +9 Abstracts
- 12:08, 5 January 2010 diff hist +182 Abstracts
- 11:48, 5 January 2010 diff hist +3 Abstracts
- 11:48, 5 January 2010 diff hist +21 Abstracts
- 11:37, 5 January 2010 diff hist +52 Abstracts
- 11:22, 5 January 2010 diff hist +39 Associating genes with papers
- 11:19, 5 January 2010 diff hist +20 Abstracts
- 11:19, 5 January 2010 diff hist +27 Associating genes with papers
- 19:03, 4 January 2010 diff hist +51 Associating genes with papers
- 19:02, 4 January 2010 diff hist +34 Abstracts
- 19:01, 4 January 2010 diff hist +3 Abstracts
- 19:01, 4 January 2010 diff hist +65 Abstracts
- 18:58, 4 January 2010 diff hist -3 Abstracts
- 18:57, 4 January 2010 diff hist +128 Abstracts
- 18:44, 4 January 2010 diff hist +81 Abstracts
- 18:41, 4 January 2010 diff hist +71 What to do about large-scale papers
- 18:41, 4 January 2010 diff hist +57 N What to do about large-scale papers New page: Previously defined as papers that study 50 or more genes.
- 18:40, 4 January 2010 diff hist +90 Associating genes with papers
- 18:34, 4 January 2010 diff hist +40 Associating genes with papers
- 18:33, 4 January 2010 diff hist +21 Abstracts
- 18:31, 4 January 2010 diff hist +1 Associating genes with papers
- 18:31, 4 January 2010 diff hist +109 Associating genes with papers
- 18:28, 4 January 2010 diff hist +1 Abstracts
- 18:27, 4 January 2010 diff hist +42 Abstracts
- 18:27, 4 January 2010 diff hist 0 Associating genes with papers
- 18:27, 4 January 2010 diff hist +28 Associating genes with papers
- 18:26, 4 January 2010 diff hist +43 Associating genes with papers
- 18:26, 4 January 2010 diff hist +2 Abstracts
- 18:26, 4 January 2010 diff hist +321 Abstracts
- 18:20, 4 January 2010 diff hist +157 N Abstracts New page: Currently, genes or proteins mentioned in the abstracts get associated with papers. (This was not always the case.) Are abstracts enough? Here's the data:
- 18:16, 4 January 2010 diff hist +307 N Associating genes with papers New page: Several possible strategies to test, may differ for sectioned vs non-sectioned papers: #Abstracts #Gene frequency #Genes in Results (or equivalent) #[[Gene frequency in Result...
- 18:13, 4 January 2010 diff hist +35 Paper Pipeline
- 13:00, 23 December 2009 diff hist +54 Paper Pipeline
- 14:57, 21 December 2009 diff hist +104 Adding Papers not in PubMed
- 14:45, 21 December 2009 diff hist +134 Adding Papers not in PubMed
- 14:26, 21 December 2009 diff hist +35 Adding Papers not in PubMed
- 14:05, 21 December 2009 diff hist +21 Adding Papers not in PubMed
- 13:56, 21 December 2009 diff hist +100 Adding Papers not in PubMed
- 13:30, 21 December 2009 diff hist +1,123 N Adding Papers not in PubMed New page: New paper information can be entered through the paper editor, but you have to create the paper (i.e. get a WBPaper ID) through postgres first. To do this, you will need to login to tazen...
- 13:21, 21 December 2009 diff hist +33 Paper Pipeline
- 14:26, 16 December 2009 diff hist -14 Primary data Tag
- 14:26, 16 December 2009 diff hist -2 Primary data Tag
- 14:26, 16 December 2009 diff hist +95 Primary data Tag
- 14:25, 16 December 2009 diff hist +28 Primary data Tag
- 14:24, 16 December 2009 diff hist +214 Primary data Tag
- 14:16, 16 December 2009 diff hist +200 N Primary data Tag New page: Paper Types that will get Primary Data Tag: Paper Types that will get No Primary Data Tag: Paper Types that will get Not Designated Tag: Back to [[New Paper Model - Model and Changes t...
- 14:14, 16 December 2009 diff hist +22 New Paper Model - Model and Changes to Pipeline
- 13:38, 16 December 2009 diff hist +337 Project meeting agendas and minutes
- 18:51, 9 December 2009 diff hist +115 In book
- 18:50, 9 December 2009 diff hist +114 In book
- 17:33, 9 December 2009 diff hist -434 In book
- 17:32, 9 December 2009 diff hist +10,968 In book
- 16:13, 9 December 2009 diff hist +115 Type - mapping incoming Type
- 16:12, 9 December 2009 diff hist +63 Type - mapping incoming Type
- 16:10, 9 December 2009 diff hist +1,675 N Type - mapping incoming Type New page: Nearly all articles are assigned the Type Journal Article when they first appear in PubMed. Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journa...
- 13:56, 9 December 2009 diff hist +123 Type - mapping of current to future Type
- 13:53, 9 December 2009 diff hist +1,336 N Type - mapping of current to future Type New page: '''Mapping of current ?Paper Type to new ?Paper Type:''' Note: all ?Paper Types are listed, even if there is no change to the text. However, new or changed Types are in '''bold''', with ...
- 13:53, 9 December 2009 diff hist +70 New Paper Model - Model and Changes to Pipeline
- 13:51, 9 December 2009 diff hist +18 Type
- 13:51, 9 December 2009 diff hist -3 Type
- 13:50, 9 December 2009 diff hist +1,321 N Type New page: '''Mapping of current ?Paper Type to new ?Paper Type:''' Note: all ?Paper Types are listed, even if there is no change to the text. However, new or changed Types are in '''bold''', with ...
- 16:10, 8 December 2009 diff hist +23 WormBase SVMs →seqchange and genesymbol
- 13:07, 8 December 2009 diff hist +28 WormBase
- 13:07, 8 December 2009 diff hist +1,543 WormBase
- 19:32, 7 December 2009 diff hist +456 Random Selection of New Training Set Papers
- 18:53, 7 December 2009 diff hist -5 Training Set
- 18:52, 7 December 2009 diff hist +10 Training Set
- 18:52, 7 December 2009 diff hist +57 Training Set
- 18:51, 7 December 2009 diff hist +27 Random Selection of New Training Set Papers
- 18:47, 7 December 2009 diff hist +134 Random Selection of New Training Set Papers
- 17:13, 7 December 2009 diff hist +553 N Random Selection of New Training Set Papers New page: Checking a random list of training set papers to verify quality for SVM: 'Yes' means the paper has the data we'd want for training. WBPaper00032217 - yes WBPaper00032287 - yes WBPaper0...
- 16:28, 7 December 2009 diff hist +6 Training Set
- 16:28, 7 December 2009 diff hist +6 Training Set
- 16:26, 7 December 2009 diff hist +246 Training Set
- 16:18, 7 December 2009 diff hist -26 WormBase SVMs
- 16:18, 7 December 2009 diff hist +1 112009 seqchange
- 16:17, 7 December 2009 diff hist +74 100209 seqchange
- 16:14, 7 December 2009 diff hist +1 100209 seqchange
- 16:14, 7 December 2009 diff hist +20 100209 seqchange
- 16:13, 7 December 2009 diff hist +49 100209 seqchange
- 16:08, 7 December 2009 diff hist 0 100209 seqchange
- 16:07, 7 December 2009 diff hist +139 100209 seqchange
- 16:07, 7 December 2009 diff hist -1 100209 seqchange
- 16:06, 7 December 2009 diff hist +2 100209 seqchange
- 16:05, 7 December 2009 diff hist +965 100209 seqchange
- 14:45, 7 December 2009 diff hist +79 100209 seqchange
- 14:44, 7 December 2009 diff hist +830 N 100209 seqchange New page: {| class="wikitable" border="1" |- ! WBPaper ID ! SVM confidence ! True positive for seqchange? ! True positive for genesymbol? ! Comments |- ! WBPaper00035194 ! high ! Sort of ! No ! Disc...
- 14:10, 7 December 2009 diff hist +25 WormBase SVMs →seqchange and genesymbol
- 14:00, 7 December 2009 diff hist -2 WormBase SVMs →seqchange and genesymbol
- 14:00, 7 December 2009 diff hist -5 WormBase SVMs →seqchange and genesymbol
- 18:04, 4 December 2009 diff hist -4 XML Status Tag
- 18:04, 4 December 2009 diff hist +243 XML Status Tag
- 18:01, 4 December 2009 diff hist +1,520 N XML Status Tag New page: '''For checking the indexing status of a paper in PubMed, we need to check the Status tag at the beginning of the record:''' Partial XML for an '''indexed''' paper, Status=MEDLINE <...
- 17:55, 4 December 2009 diff hist +20 New Paper Model - Model and Changes to Pipeline
- 14:42, 4 December 2009 diff hist +4 Overall performance
- 14:41, 4 December 2009 diff hist +7 Overall performance
- 14:41, 4 December 2009 diff hist +54 Overall performance
- 14:37, 4 December 2009 diff hist +27 Overall performance