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  1. AceDB classes
  2. AceDB classes tutorial
  3. AceOjbect Redesign Page
  4. Adding Data to a Widget (Example)
  5. Adding Missing Authors
  6. Adding Papers not in PubMed
  7. Adding new Phenotype2GO annotations to postgres
  8. Adding pmid Identifier to Paper Object
  9. Administration:Installing WormBase
  10. Administration:Installing WormMine
  11. Administration:WormBase Production Environment
  12. All OA tables
  13. All genes
  14. Allele-sequence micropublications
  15. Allele curation
  16. Alliance - migrating WormBase papers to Alliance ABC
  17. Anatomy AND life stage .ace examples
  18. Anatomy function
  19. Annotation of Disease scripts
  20. Antibody
  21. Antibody curation
  22. April
  23. Ascaris suum
  24. Associating genes with papers
  25. Attaching Genes to Papers
  26. Author Curation
  27. Author Person
  28. Author first pass requests
  29. Automated descriptions for C. briggsae
  30. Automated gene descriptions 2.0
  31. Automating dicty literature upload - Arun, Petra, Sidd
  32. Automation progress
  33. BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART
  34. BASIC PROTOCOL 11: DOWNLOADING A BATCH OF SEQUENCES
  35. BASIC PROTOCOL 12: EXAMINING THE GENOMIC CONTENT OF A CLASSICAL GENETIC INTERVAL
  36. BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
  37. BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
  38. BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
  39. BASIC PROTOCOL 4: EXAMINING A MOLECULAR SEQUENCE IN C. ELEGANS
  40. BASIC PROTOCOL 5: FINDING PROTEIN FEATURES
  41. BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS
  42. BASIC PROTOCOL 7: USING THE GENOME BROWSER
  43. BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS
  44. BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST
  45. BLAST/BLAT Page
  46. Balancers
  47. Balloon Tooltips
  48. Base node configuration - CentOS5
  49. BioGRID ftp file to WormBase Model
  50. Books
  51. Brugia malayi
  52. Brute force - modencode migration
  53. Building Frozen Releases
  54. Building Squid
  55. Building WormMart
  56. Bursaphelenchus xylophilus
  57. C. elegans Community Climate Survey - August 2020
  58. C. elegans Community Mentor Match Program
  59. C. elegans Community Mentor Match Program Initial Plan
  60. C. elegans models for human disease in the literature
  61. C.remanei
  62. CCC Form 2.0 Specifications
  63. CCC Workflow
  64. COMMENTARY
  65. CSHL documentation
  66. CVS Access To WormBase
  67. Caenorhabditis angaria
  68. Caenorhabditis brenneri
  69. Caenorhabditis briggsae
  70. Caenorhabditis drosophilae
  71. Caenorhabditis elegans
  72. Caenorhabditis japonica
  73. Caenorhabditis remanei
  74. Caenorhabditis species 11
  75. Caenorhabditis species 5
  76. Caenorhabditis species 7
  77. Caenorhabditis species 9
  78. Calls
  79. Caltech documentation
  80. Ccc.cgi documentation
  81. Cell death
  82. Cell division
  83. Citace data assignments
  84. Citace upload report
  85. Citing WormBase
  86. Citing and Acknowledging WormBase
  87. Co-op Documentation
  88. CoKo white board meeting
  89. Coding standards
  90. Coko foundation white board meeting
  91. Community Curation
  92. ComparaTutorial
  93. Comparison CGI
  94. Concise Descriptions
  95. Conference call Minutes
  96. Conference call agendas and minutes
  97. Conference calls
  98. Configuring a server to host virtual machines
  99. Construct
  100. Contacting the Community
  101. Contributing Allele Phenotype Connections
  102. Contributing Phenotype Connections
  103. Converting Coordinates between releases
  104. Converting GFF2 to GFF3
  105. Cosmids/YACs
  106. Creating New Book Objects
  107. Creating Virtual Disks
  108. Creating a Google Sitemap
  109. Creating a tool
  110. Creating a widget
  111. Crem Contig1442 Crem Contig1336 Poss Join
  112. Cronjobs
  113. Curated data types
  114. Curation Scenarios for new GO Model - GPAD and .ace Representations
  115. Curation status
  116. DNA Degradation Pathway
  117. Data Model
  118. Data and display problems of GO annotations in WormBase
  119. Data contained in WormMine
  120. Data mining
  121. Data mining:AQL tutorial
  122. Data mining:WQL tutorial
  123. Data mining:WormMart
  124. Data mining:WormMart:Example 1
  125. Data mining:WormMart:Example 1 new
  126. Data mining:WormMart:Example 2
  127. Data mining:WormMart:Example 3
  128. Data mining:WormMart:Example 5
  129. Data mining:WormMart:Example 6
  130. Datatypes flagged
  131. Death
  132. December 15, 2010
  133. Deleting Authors
  134. Design Specs: API
  135. Design Specs: Application Configuration
  136. Design Specs: Application Request Flow
  137. Design Specs: Authorization and Authentication
  138. Design Specs: CSS
  139. Design Specs: Configuration setup and 3rd party software install
  140. Design Specs: Database Connectivity
  141. Design Specs: Evidence Handling
  142. Design Specs: GBrowse Integration
  143. Design Specs: Interactivity
  144. Design Specs: Production management
  145. Design Specs: REST web service
  146. Design Specs: Scalability
  147. Design Specs: Session Cleanup
  148. Design Specs: Templates
  149. Detailed Documentation of Form and Scripts
  150. Detailed curation workflows and search scenarios
  151. Developer documentation
  152. Developer notes
  153. Development notes WS163
  154. Development notes WS164
  155. Development notes WS165
  156. Development notes WS166
  157. Development notes WS167
  158. Development notes WS170
  159. Development notes WS171
  160. Development notes WS173
  161. Development workflow - webdev
  162. DictyBase
  163. Discussion
  164. Disease Ontology contributions and related issues
  165. Disease and Drugs
  166. Documentation and Communication Standards
  167. Documentation for workflow and scripts
  168. Doodle Polls for conference call scheduling
  169. Downloads
  170. Drugs
  171. Dumping Script
  172. Editorial policy
  173. Entering New Paper Objects
  174. Entering WBG Articles
  175. Entity classes and problems
  176. Erratum in and Erratum for
  177. Establishing the SVN repository
  178. Evidence Code Ontology
  179. Example Pages
  180. Example marked up papers
  181. Example molecule pages
  182. Example topic pages
  183. Experimental protocols
  184. Expression Cluster
  185. Expression Pattern
  186. Expression pattern remodel
  187. FAQs
  188. FIGURE(S)
  189. FP curator comments for St.Louis and Sanger structure correction data type
  190. Feature Requests
  191. Feature WishList
  192. February 15, 2011
  193. February 22, 2011
  194. File Specifications for Downloading Manual Annotations for Protein2GO
  195. First-pass data types explained
  196. First-pass flagging pipelines
  197. First-pass schedule, instructions, automation
  198. First-pass to Curation
  199. FlyBase
  200. Foreign Characters in Author Names from PubMed
  201. Formal development strategy
  202. Formatting Help
  203. Former How To Build A WormBase Mirror
  204. Fosmids
  205. Further clarification
  206. Future Entities for markup
  207. GAF to .ace file
  208. GBrowseInstallation
  209. GBrowse Administration
  210. GFF2 features
  211. GFF3 Validation
  212. GFF3 features (C. briggsae)
  213. GFF3 features (C. elegans)
  214. GFF3specProposal
  215. GFF Release Data and Changes
  216. GFF source methods
  217. GO-CAM GPAD
  218. GO entity markup
  219. GPAD to .ace file
  220. GPAD to .go file
  221. GSA-GO Linking Summary Tables
  222. GSA Markup Meeting Notes
  223. GSA Markup SOP
  224. GSA linking pipeline
  225. Gazette articles
  226. Gene-Paper Associations
  227. Gene-Paper Connections
  228. Gene - GO Curation Status
  229. Gene Class Descriptions
  230. Gene Expression micropublications
  231. Gene Interaction
  232. Gene Interaction/archive
  233. Gene Ontology
  234. Gene Page
  235. Gene Prediction
  236. Gene Regulation
  237. Gene finders
  238. General User Guide
  239. General User Guide Temp
  240. General administration
  241. General specifications
  242. Generating Initial GAF file for Upload to Postgres
  243. Generation of VPC's
  244. Generation of automated descriptions
  245. Genes
  246. Genes mentioned along with word in Figure or Table category
  247. Genetics Markup by Textpresso and First Pass
  248. Genetics Paper Pipeline
  249. Genome Browser Help
  250. Genome Standards
  251. Genome sequence changes
  252. Genotype
  253. Geographic Displays
  254. Getting Meeting Abstracts into WormBase
  255. Getting Papers into WormBase
  256. Ggi OA
  257. Github Helpdesk Working Document
  258. Globodera pallida
  259. Glossary of terms
  260. Guidelines for Users on Submitting/Reporting Data to WormBase
  261. HOWTO migrate a CGI
  262. Haemonchus contortus
  263. Handling Corrections and Errata
  264. Help Desk During 2011 International Worm Meeting
  265. Help Desk During International Worm Meeting
  266. Help desk schedule
  267. Heterorhabditis bacteriophora
  268. Hinxton 2015.06- Meeting minutes
  269. Hinxton 2015.07- Meeting minutes
  270. Hinxton 2015.08- Meeting minutes
  271. Hinxton 2016.01- Meeting minutes
  272. Hinxton 2019.01- Meeting minutes
  273. Hinxton weekly meetings
  274. Horrible curation examples
  275. How WormBase writes a concise description
  276. How are the repeats determined?
  277. How to build a WormBase Virtual Machine
  278. How to build a frozen release
  279. How to make a new Textpresso category
  280. INDI
  281. INTERNET RESOURCES
  282. INTRODUCTION
  283. ISB2014 Babbitt
  284. ISB2014 Session2 Systems Biology
  285. ISB2014 Session3 Functional Annotations
  286. ISB2014 Session4 Microbial Informatics
  287. ISB2014 Session5 Data Integration and Sharing
  288. ISB2014 Stein
  289. ISB2014 Workshop4 Big Data Curation
  290. ISB2014 WormBase notes
  291. ISB2014 group notes
  292. Importing PFAM Images
  293. Importing Protein Structure Data
  294. Importing Protein Structure Data Images
  295. In book
  296. In vitro flagging
  297. Innate Immunity, Defense Response, MAPK Signaling Pathway
  298. Installing Phenote
  299. Installing Phenote+
  300. Instructions for Genetics
  301. Instructions for curators
  302. InterMOD meeting jdmswong
  303. InterMine Strategy Meeting: June 7, 2013
  304. InterMine Strategy Meeting: May 14, 2013
  305. InterMine Strategy Meeting: May 21, 2013
  306. InterMine Strategy Meeting: May 29, 2013
  307. InterMine Strategy Meeting: May 9, 2013
  308. InterMine Strategy Meetings
  309. Interaction Display in the Gene Page
  310. International C. elegans Meetings - UCLA
  311. Introduction to Phenote+
  312. Invalid PMIDs in postgres and WormBase
  313. Issues-10/1/2013
  314. Issues-10/15/2013
  315. Issues-10/8/2013
  316. Issues-11/12/2013
  317. Issues-11/5/2013
  318. Issues-3/12/2013
  319. Issues-3/14/2013
  320. Issues-3/19/2013
  321. Issues-3/21/2013
  322. Issues-3/26/2013
  323. Issues-3/28/2013
  324. Issues-3/7/2013
  325. Issues-4/16/2013
  326. Issues-4/18/2013
  327. Issues-4/2/2013
  328. Issues-4/23/2013
  329. Issues-4/25/2013
  330. Issues-4/30/2013
  331. Issues-4/4/2013
  332. Issues-4/9/2013
  333. Issues-5/2/2013
  334. Issues-5/21/2013
  335. Issues-5/23/2013
  336. Issues-5/28/2013
  337. Issues-5/30/2013
  338. Issues-5/7/2013
  339. Issues-5/9/2013
  340. Issues-6/11/2013
  341. Issues-6/13/2013
  342. Issues-6/18/2013
  343. Issues-6/20/2013
  344. Issues-6/4/2013
  345. Issues-6/6/2013
  346. Issues-7/16/2013
  347. Issues-7/23/2013
  348. Issues-7/30/2013
  349. Issues-7/4/2013
  350. Issues-7/9/2013
  351. Issues-8/20/2013
  352. Issues-8/27/2013
  353. Issues-9/10/2013
  354. Issues-9/17/2013
  355. Issues-9/24/2013
  356. Issues-9/3/2013
  357. January 12, 2010
  358. Javascript libraries
  359. Jdmswong notes
  360. Jdmswong sandbox
  361. Jenkins Checks
  362. Jfp postgres table details
  363. Job Openings
  364. Journal first-pass (jfp) postgres table details
  365. Journals
  366. Juancarlos
  367. June
  368. June 2012 - Weekly Pipeline Set-up
  369. KEY REFERENCES
  370. Key publications
  371. LEGO Curation
  372. Lexicon Development Tool
  373. Life Stage
  374. Linking To WormBase
  375. Linking script pipeline
  376. Lists
  377. Local installation of WormBase
  378. Log file management and analysis
  379. Lung Development Targets (November 2009 - February 2010)
  380. MacOSX(Leopard)
  381. Mac OSX(Leopard)
  382. Mailing lists
  383. Main Page
  384. Main Page Temp
  385. Managing Perl Libraries
  386. Managing Perl libraries across nodes
  387. Managing servers hosting virtual machines
  388. Mapped Transgenes
  389. Mapping the GAF to GO OA tables
  390. March
  391. Mark Up Work Flow
  392. Mark up policy
  393. Markup excerpts
  394. May
  395. Meeting Abstracts
  396. Meeting abstracts
  397. Meetings
  398. Meloidogyne hapla
  399. Meloidogyne incognita
  400. Merging Papers
  401. Methods Journals
  402. Mf hmm tool
  403. Microarray Data
  404. Micropub Pipeline
  405. Micropublication tracker
  406. Micropublications
  407. Migration
  408. Mining AceDB/WormBase with AcePerl
  409. Mining WormBase with Bio::DB::GFF
  410. Mirror sites and frozen releases
  411. Missing Abstracts in PLoS One, PLoS Biol Papers
  412. Missing PMIDs
  413. ModENCODE
  414. ModENCODE Analysis & metadata discussion
  415. ModENCODE Integration status
  416. ModENCODE TilingArray
  417. Model changes
  418. Model changes to capture and consolidate human disease data
  419. Modeling data for Infectious agents
  420. Molecule
  421. Molecule model build
  422. Molecule papers
  423. Most wanted web features
  424. Movie
  425. MySQL database replication
  426. N-Browse Installation & Interaction Data
  427. N-Z titles
  428. NBC sign off documentation
  429. NGASP
  430. NGASP Results
  431. NGASP submit
  432. Nematode resequencing and diversity
  433. Nematode sequencing summary
  434. New 2012 Curation Status
  435. New GO Progress Report Script
  436. New Model Implementation Checklist
  437. New Paper Model - Model and Changes to Pipeline
  438. Nippostrongylus brasiliensis
  439. Noctua - Upload of WB Manual Annotations
  440. Noctua model curation tracking table
  441. Nomenclature
  442. November 2012 - Weekly Pipeline Set-up
  443. November 2014 Phenotype2GO Mappings File
  444. November 25, 2009 - Sequence Curation Flags
  445. OA-phenotype
  446. OA and scripts for disease data
  447. OA for disease term
  448. OA forms, tables, scripts, etc
  449. OICR-Configuring the development machine
  450. Old pipeline for disease data
  451. Onchocerca volvulus
  452. Ontologies
  453. Ontology Annotator
  454. Ontology Annotator - The GO annotation interface
  455. Optimizing site performance
  456. Orthologs: use cases for searches
  457. Orthology, Homology and Paralog data in WormBase
  458. Other nematodes
  459. Output files - Petra, Kimberly, Sidd, Juancarlos
  460. Outstanding Model questions
  461. Overall performance
  462. Overview
  463. pmid:26412237
  464. Paper ID conversion CGI
  465. Paper Pipeline
  466. Paper Pipeline - To Do List
  467. Paper Pipeline Scripts
  468. Paper Pipeline To Do - May 2011
  469. Paper Tables in Postgres
  470. Paper Type
  471. Paper editor.cgi code
  472. Papers that use GO - 2015
  473. Partslist
  474. Person
  475. Phasing out the manual annotations
  476. Phenote+ Phenotype Curation
  477. Phenote .ace citace upload
  478. Phenote .ace dump and citace upload SOP
  479. Phenote .obo files and where they come from
  480. Phenote Fields
  481. Phenote cgi wish list
  482. Phenote quirks and bugs/fixes to request
  483. Phenotype2GO Analysis
  484. Phenotype2GO Mappings File
  485. Phenotype2GO Mappings Sept. 09
  486. Phenotype2GO Paper Inclusion List
  487. Phenotype2GO pipeline SOP
  488. Phenotype Ontology Development
  489. Phenotype micropublications
  490. Phenotypes
  491. Physical Interactions
  492. Picture Data Model
  493. Pictures
  494. Pipeline
  495. Pipeline for identifying papers with disease or disease gene ortholog
  496. Pipeline for identifying papers with drugs
  497. Populating Species Tag
  498. Populating dois
  499. Populating the OA and New Dumping Script
  500. Possible assembly errors

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