Uncategorized pages

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  1. (10)
  2. .ace examples
  3. 2011 Advisory Board Meeting
  4. 2013 Advisory Board Meeting
  5. 20141009 - Phenotype2GO Mappings Updates
  6. 20141022 - Phenotype2GO Pipeline
  7. 2014 Advisory Board Meeting
  8. 2015 International Worm Meeting
  9. 2016
  10. 2016 Advisory Board Meeting
  11. 2018
  12. 2018 Advisory Board Meeting
  13. Adding Missing Authors
  14. Adding new Phenotype2GO annotations to postgres
  15. Adding pmid Identifier to Paper Object
  16. All OA tables
  17. All genes
  18. Allele-sequence micropublications
  19. Alliance - migrating WormBase papers to Alliance ABC
  20. Anatomy AND life stage .ace examples
  21. Anatomy function
  22. Annotation of Disease scripts
  23. Antibody
  24. April
  25. Author Curation
  26. Author Person
  27. Automated descriptions for C. briggsae
  28. Automated gene descriptions 2.0
  29. Automating dicty literature upload - Arun, Petra, Sidd
  30. Automation progress
  31. BioGRID ftp file to WormBase Model
  32. C. elegans Community Climate Survey - August 2020
  33. C. elegans Community Mentor Match Program
  34. C. elegans Community Mentor Match Program Initial Plan
  35. C. elegans models for human disease in the literature
  36. CCC Form 2.0 Specifications
  37. CCC Workflow
  38. Calls
  39. Caltech documentation
  40. Ccc.cgi documentation
  41. Citace upload report
  42. Citing and Acknowledging WormBase
  43. CoKo white board meeting
  44. Coko foundation white board meeting
  45. Community Curation
  46. Comparison CGI
  47. Conference call Minutes
  48. Construct
  49. Contacting the Community
  50. Contributing Allele Phenotype Connections
  51. Contributing Phenotype Connections
  52. Creating New Book Objects
  53. Curation Scenarios for new GO Model - GPAD and .ace Representations
  54. Curation status
  55. DNA Degradation Pathway
  56. Data Model
  57. Data and display problems of GO annotations in WormBase
  58. Data contained in WormMine
  59. Death
  60. December 15, 2010
  61. Deleting Authors
  62. Design Specs: Configuration setup and 3rd party software install
  63. Design Specs: Evidence Handling
  64. Design Specs: GBrowse Integration
  65. Design Specs: REST web service
  66. Design Specs: Session Cleanup
  67. Detailed Documentation of Form and Scripts
  68. Detailed curation workflows and search scenarios
  69. Disease Ontology contributions and related issues
  70. Disease and Drugs
  71. Documentation for workflow and scripts
  72. Drugs
  73. Entering WBG Articles
  74. Evidence Code Ontology
  75. Example Pages
  76. Example marked up papers
  77. Example molecule pages
  78. Expression Cluster
  79. Expression Pattern
  80. Expression pattern remodel
  81. Feature WishList
  82. February 15, 2011
  83. February 22, 2011
  84. File Specifications for Downloading Manual Annotations for Protein2GO
  85. Foreign Characters in Author Names from PubMed
  86. GAF to .ace file
  87. GFF Release Data and Changes
  88. GO-CAM GPAD
  89. GO entity markup
  90. GPAD to .ace file
  91. GPAD to .go file
  92. GSA-GO Linking Summary Tables
  93. GSA Markup Meeting Notes
  94. Gene-Paper Connections
  95. Gene Expression micropublications
  96. Gene Interaction
  97. Gene Interaction/archive
  98. Gene Page
  99. Gene Prediction
  100. Gene Regulation
  101. General User Guide
  102. General User Guide Temp
  103. General specifications
  104. Generating Initial GAF file for Upload to Postgres
  105. Generation of automated descriptions
  106. Genes
  107. Genetics Paper Pipeline
  108. Genotype
  109. Getting Meeting Abstracts into WormBase
  110. Ggi OA
  111. Github Helpdesk Working Document
  112. Handling Corrections and Errata
  113. Help Desk During 2011 International Worm Meeting
  114. Help Desk During International Worm Meeting
  115. Hinxton 2015.06- Meeting minutes
  116. Hinxton 2015.07- Meeting minutes
  117. Hinxton 2015.08- Meeting minutes
  118. Hinxton 2016.01- Meeting minutes
  119. Hinxton 2019.01- Meeting minutes
  120. Horrible curation examples
  121. How WormBase writes a concise description
  122. INDI
  123. ISB2014 Babbitt
  124. ISB2014 Session2 Systems Biology
  125. ISB2014 Session3 Functional Annotations
  126. ISB2014 Session4 Microbial Informatics
  127. ISB2014 Session5 Data Integration and Sharing
  128. ISB2014 Stein
  129. ISB2014 Workshop4 Big Data Curation
  130. ISB2014 WormBase notes
  131. ISB2014 group notes
  132. In vitro flagging
  133. Innate Immunity, Defense Response, MAPK Signaling Pathway
  134. InterMOD meeting jdmswong
  135. InterMine Strategy Meeting: June 7, 2013
  136. InterMine Strategy Meeting: May 14, 2013
  137. InterMine Strategy Meeting: May 21, 2013
  138. InterMine Strategy Meeting: May 29, 2013
  139. InterMine Strategy Meeting: May 9, 2013
  140. International C. elegans Meetings - UCLA
  141. Introduction to Phenote+
  142. Issues-10/1/2013
  143. Issues-10/15/2013
  144. Issues-10/8/2013
  145. Issues-11/12/2013
  146. Issues-11/5/2013
  147. Issues-3/12/2013
  148. Issues-3/14/2013
  149. Issues-3/19/2013
  150. Issues-3/21/2013
  151. Issues-3/26/2013
  152. Issues-3/28/2013
  153. Issues-3/7/2013
  154. Issues-4/16/2013
  155. Issues-4/18/2013
  156. Issues-4/2/2013
  157. Issues-4/23/2013
  158. Issues-4/25/2013
  159. Issues-4/30/2013
  160. Issues-4/4/2013
  161. Issues-4/9/2013
  162. Issues-5/2/2013
  163. Issues-5/21/2013
  164. Issues-5/23/2013
  165. Issues-5/28/2013
  166. Issues-5/30/2013
  167. Issues-5/7/2013
  168. Issues-5/9/2013
  169. Issues-6/11/2013
  170. Issues-6/13/2013
  171. Issues-6/18/2013
  172. Issues-6/20/2013
  173. Issues-6/4/2013
  174. Issues-6/6/2013
  175. Issues-7/16/2013
  176. Issues-7/23/2013
  177. Issues-7/30/2013
  178. Issues-7/4/2013
  179. Issues-7/9/2013
  180. Issues-8/20/2013
  181. Issues-8/27/2013
  182. Issues-9/10/2013
  183. Issues-9/17/2013
  184. Issues-9/24/2013
  185. Issues-9/3/2013
  186. January 12, 2010
  187. Jdmswong notes
  188. Jdmswong sandbox
  189. Jenkins Checks
  190. June
  191. June 2012 - Weekly Pipeline Set-up
  192. LEGO Curation
  193. Life Stage
  194. Lists
  195. MacOSX(Leopard)
  196. Main Page Temp
  197. Mapping the GAF to GO OA tables
  198. March
  199. May
  200. Meeting abstracts
  201. Methods Journals
  202. Mf hmm tool
  203. Microarray Data
  204. Micropub Pipeline
  205. Micropublication tracker
  206. Micropublications
  207. Missing Abstracts in PLoS One, PLoS Biol Papers
  208. Missing PMIDs
  209. ModENCODE Integration status
  210. Model changes
  211. Model changes to capture and consolidate human disease data
  212. Modeling data for Infectious agents
  213. Molecule model build
  214. Molecule papers
  215. Movie
  216. NBC sign off documentation
  217. New 2012 Curation Status
  218. New GO Progress Report Script
  219. New Model Implementation Checklist
  220. Noctua - Upload of WB Manual Annotations
  221. Noctua model curation tracking table
  222. November 2012 - Weekly Pipeline Set-up
  223. November 2014 Phenotype2GO Mappings File
  224. OA-phenotype
  225. OA and scripts for disease data
  226. OA for disease term
  227. Old pipeline for disease data
  228. Ontologies
  229. Ontology Annotator - The GO annotation interface
  230. Orthology, Homology and Paralog data in WormBase
  231. Output files - Petra, Kimberly, Sidd, Juancarlos
  232. Outstanding Model questions
  233. Overview
  234. pmid:26412237
  235. Paper ID conversion CGI
  236. Paper Pipeline Scripts
  237. Paper Pipeline To Do - May 2011
  238. Paper Tables in Postgres
  239. Paper editor.cgi code
  240. Papers that use GO - 2015
  241. Person
  242. Phasing out the manual annotations
  243. Phenote .ace dump and citace upload SOP
  244. Phenotype2GO Analysis
  245. Phenotype Ontology Development
  246. Phenotype micropublications
  247. Physical Interactions
  248. Picture Data Model
  249. Pictures
  250. Pipeline for identifying papers with disease or disease gene ortholog
  251. Pipeline for identifying papers with drugs
  252. Populating Species Tag
  253. Populating dois
  254. Populating the OA and New Dumping Script
  255. Postgres Query
  256. Postgres management
  257. Postgres queries
  258. Postgres status
  259. Processing Gene and Protein Names for Searches and Curation
  260. Progress Report 2011
  261. Project Calendar
  262. Query Builder
  263. Query Results
  264. Quick response cheatsheet
  265. RNAi
  266. RNAi/archive
  267. Regional and Topical Meetings
  268. Relations Ontology
  269. Review Call Agenda and Minutes
  270. Rnaseq library details
  271. SOP for GO citace and GO consortium data uploads
  272. SOP for generating GO files for citace and GO consortium uploads
  273. Sample paper and data for exploring updates
  274. Scripts for file dumping and conversion
  275. Searching WormMine
  276. Sequence Feature
  277. Software Life Cycle: 1. Updating The Development Server
  278. Software Life Cycle: 3. QA/QC and Performance Benchmarking
  279. Source and maintenance of non-WBGene info
  280. Specifications for CCC Curation from Textpresso Search Page
  281. Specifications for WB gpi file
  282. Specifications for a Community Annotation Form
  283. Specifications for a DAF for gene-disease data
  284. Specifications for a GAF for gene-disease data
  285. Specifications for a GAF for gene-life stage data
  286. Specifications for data submission to the Alliance
  287. Specifications for source files
  288. Starting a new Journal
  289. Strain
  290. Subsequent Phenotype2GO Uploads to Postgres
  291. TAIR CCC
  292. TBA
  293. Tasks
  294. Tasks in Progress
  295. Technology
  296. Test searches - from web site or by script? - Arun, Kimberly, Juancarlos
  297. Testing Form - 20130611
  298. Testing Search Results - 20130509
  299. Textpresso-based automated extraction of concise descriptions
  300. Textpresso Central
  301. Textpresso related forms
  302. Topic Curation
  303. TransgeneOme import
  304. Transgene Markers
  305. Tutorial:WormMine
  306. Understand the pipeline by looking at all scripts and forms
  307. UniProt-GOA syntax checking
  308. UniProtKB gpad to WormBase .ace
  309. UniProt Paper - Gene - Data Type
  310. Unused Attributes
  311. Unused evidence
  312. Update Matrix WS220
  313. Updating Postgres with New WS Information
  314. Updating go.ace file
  315. UserGuide:Nomenclature
  316. UserGuide:Person:Lineage
  317. UserGuide:RNASeqFPKMGraph
  318. UserGuide:Reivsed Nomenclature
  319. UserGuide:Revised Nomenclature
  320. UserGuide:SimpleMine
  321. User Guide/Gene/Phenotype Graph
  322. User Guide/SObA
  323. User Guide/TEA
  324. User Guide for Curators
  325. Using the Paper Editor
  326. VariationConciseDescriptions
  327. WB-ABM-2013-Agenda
  328. WB2 page review
  329. WB:Gene:rgs-6
  330. WBConfCall 2011.05.19-Agenda and Minutes
  331. WBConfCall 2011.07.21-Agenda and Minutes
  332. WBConfCall 2011.11.03-Agenda and Minutes
  333. WBConfCall 2011.11.17-Agenda and Minutes
  334. WBConfCall 2011.12.15-Agenda and Minutes
  335. WBConfCall 2012.02.02-Agenda and Minutes
  336. WBConfCall 2012.02.05-Agenda and Minutes
  337. WBConfCall 2012.02.16-Agenda and Minutes
  338. WBConfCall 2012.03.01-Agenda and Minutes
  339. WBConfCall 2012.03.15-Agenda and Minutes
  340. WBConfCall 2012.04.05-Agenda and Minutes
  341. WBConfCall 2012.04.19-Agenda and Minutes
  342. WBConfCall 2012.05.03-Agenda and Minutes
  343. WBConfCall 2012.05.17-Agenda and Minutes
  344. WBConfCall 2012.06.07-Agenda and Minutes
  345. WBConfCall 2012.06.21-Agenda and Minutes
  346. WBConfCall 2012.07.019-Agenda and Minutes
  347. WBConfCall 2012.07.05-Agenda and Minutes
  348. WBConfCall 2012.08.02-Agenda and Minutes
  349. WBConfCall 2012.08.16-Agenda and Minutes
  350. WBConfCall 2012.09.06-Agenda and Minutes
  351. WBConfCall 2012.09.20-Agenda and Minutes
  352. WBConfCall 2012.10.03-Agenda and Minutes
  353. WBConfCall 2012.10.17-Agenda and Minutes
  354. WBConfCall 2012.10.18-Agenda and Minutes
  355. WBConfCall 2012.11.01-Agenda and Minutes
  356. WBConfCall 2012.12.06-Agenda and Minutes
  357. WBConfCall 2012.12.20-Agenda and Minutes
  358. WBConfCall 2013.01.10-Agenda and Minutes
  359. WBConfCall 2013.01.24-Agenda and Minutes
  360. WBConfCall 2013.02.07-Agenda and Minutes
  361. WBConfCall 2013.02.21-Agenda and Minutes
  362. WBConfCall 2013.03.07-Agenda and Minutes
  363. WBConfCall 2013.03.21-Agenda and Minutes
  364. WBConfCall 2013.04.04-Agenda and Minutes
  365. WBConfCall 2013.04.18-Agenda and Minutes
  366. WBConfCall 2013.05.02-Agenda and Minutes
  367. WBConfCall 2013.05.16-Agenda and Minutes
  368. WBConfCall 2013.06.06-Agenda and Minutes
  369. WBConfCall 2013.06.20-Agenda and Minutes
  370. WBConfCall 2013.07.18-Agenda and Minutes
  371. WBConfCall 2013.08.01-Agenda and Minutes
  372. WBConfCall 2013.08.15-Agenda and Minutes
  373. WBConfCall 2013.09.05-Agenda and Minutes
  374. WBConfCall 2013.09.19-Agenda and Minutes
  375. WBConfCall 2013.10.02-Agenda and Minutes
  376. WBConfCall 2013.10.17-Agenda and Minutes
  377. WBConfCall 2013.11.07-Agenda and Minutes
  378. WBConfCall 2013.11.21-Agenda and Minutes
  379. WBConfCall 2013.12.05-Agenda and Minutes
  380. WBConfCall 2013.12.19-Agenda and Minutes
  381. WBConfCall 2014.01.09-Agenda and Minutes
  382. WBConfCall 2014.01.23-Agenda and Minutes
  383. WBConfCall 2014.02.06-Agenda and Minutes
  384. WBConfCall 2014.02.20-Agenda and Minutes
  385. WBConfCall 2014.03.06-Agenda and Minutes
  386. WBConfCall 2014.03.20-Agenda and Minutes
  387. WBConfCall 2014.04.03-Agenda and Minutes
  388. WBConfCall 2014.04.17-Agenda and Minutes
  389. WBConfCall 2014.05.01-Agenda and Minutes
  390. WBConfCall 2014.06.05-Agenda and Minutes
  391. WBConfCall 2014.06.19-Agenda and Minutes
  392. WBConfCall 2014.07.03-Agenda and Minutes
  393. WBConfCall 2014.07.17-Agenda and Minutes
  394. WBConfCall 2014.07.31-Agenda and Minutes
  395. WBConfCall 2014.08.07-Agenda and Minutes
  396. WBConfCall 2014.08.21-Agenda and Minutes
  397. WBConfCall 2014.09.03-Agenda and Minutes
  398. WBConfCall 2014.09.18-Agenda and Minutes
  399. WBConfCall 2014.10.02-Agenda and Minutes
  400. WBConfCall 2014.10.16-Agenda and Minutes
  401. WBConfCall 2014.11.06-Agenda and Minutes
  402. WBConfCall 2014.11.13-Agenda and Minutes
  403. WBConfCall 2014.12.18-Agenda and Minutes
  404. WBConfCall 2014.12.4-Agenda and Minutes
  405. WBConfCall 2015.01.15-Agenda and Minutes
  406. WBConfCall 2015.01.22-Agenda and Minutes
  407. WBConfCall 2015.02.19-Agenda and Minutes
  408. WBConfCall 2015.02.5-Agenda and Minutes
  409. WBConfCall 2015.03.05-Agenda and Minutes
  410. WBConfCall 2015.03.19-Agenda and Minutes
  411. WBConfCall 2015.04.02-Agenda and Minutes
  412. WBConfCall 2015.04.16-Agenda and Minutes
  413. WBConfCall 2015.05.07-Agenda and Minutes
  414. WBConfCall 2015.05.21-Agenda and Minutes
  415. WBConfCall 2015.06.04-Agenda and Minutes
  416. WBConfCall 2015.06.17-Agenda and Minutes
  417. WBConfCall 2015.06.18-Agenda and Minutes
  418. WBConfCall 2015.07.02-Agenda and Minutes
  419. WBConfCall 2015.07.16-Agenda and Minutes
  420. WBConfCall 2015.07.30-Agenda and Minutes
  421. WBConfCall 2015.08.06-Agenda and Minutes
  422. WBConfCall 2015.08.20-Agenda and Minutes
  423. WBConfCall 2015.09.03-Agenda and Minutes
  424. WBConfCall 2015.09.17-Agenda and Minutes
  425. WBConfCall 2015.10.01-Agenda and Minutes
  426. WBConfCall 2015.10.15-Agenda and Minutes
  427. WBConfCall 2015.11.05-Agenda and Minutes
  428. WBConfCall 2015.11.19-Agenda and Minutes
  429. WBConfCall 2015.12.03-Agenda and Minutes
  430. WBConfCall 2015.12.17-Agenda and Minutes
  431. WBConfCall 2016.01.07-Agenda and Minutes
  432. WBConfCall 2016.01.21-Agenda and Minutes
  433. WBConfCall 2016.02.18-Agenda and Minutes
  434. WBConfCall 2016.03.03-Agenda and Minutes
  435. WBConfCall 2016.03.17-Agenda and Minutes
  436. WBConfCall 2016.04.07-Agenda and Minutes
  437. WBConfCall 2016.04.21-Agenda and Minutes
  438. WBConfCall 2016.05.05-Agenda and Minutes
  439. WBConfCall 2016.05.19-Agenda and Minutes
  440. WBConfCall 2016.06.02-Agenda and Minutes
  441. WBConfCall 2016.06.16-Agenda and Minutes
  442. WBConfCall 2016.07.07-Agenda and Minutes
  443. WBConfCall 2016.07.21-Agenda and Minutes
  444. WBConfCall 2016.08.04-Agenda and Minutes
  445. WBConfCall 2016.08.18-Agenda and Minutes
  446. WBConfCall 2016.09.01-Agenda and Minutes
  447. WBConfCall 2016.09.15-Agenda and Minutes
  448. WBConfCall 2016.10.06-Agenda and Minutes
  449. WBConfCall 2016.10.20-Agenda and Minutes
  450. WBConfCall 2016.11.03-Agenda and Minutes
  451. WBConfCall 2016.11.17-Agenda and Minutes
  452. WBConfCall 2016.12.01-Agenda and Minutes
  453. WBConfCall 2016.12.15-Agenda and Minutes
  454. WBConfCall 2017-04-06-Agenda and Minutes
  455. WBConfCall 2017-04-20-Agenda and Minutes
  456. WBConfCall 2017-05-04-Agenda and Minutes
  457. WBConfCall 2017-05-18-Agenda and Minutes
  458. WBConfCall 2017-06-01-Agenda and Minutes
  459. WBConfCall 2017-06-15-Agenda and Minutes
  460. WBConfCall 2017-07-06-Agenda and Minutes
  461. WBConfCall 2017-07-20-Agenda and Minutes
  462. WBConfCall 2017-08-017-Agenda and Minutes
  463. WBConfCall 2017-08-03-Agenda and Minutes
  464. WBConfCall 2017-09-06-Agenda and Minutes
  465. WBConfCall 2017-09-21-Agenda and Minutes
  466. WBConfCall 2017-10-05-Agenda and Minutes
  467. WBConfCall 2017-10-18-Agenda and Minutes
  468. WBConfCall 2017-11-05-Agenda and Minutes
  469. WBConfCall 2017-11-16-Agenda and Minutes
  470. WBConfCall 2017-12-05-Agenda and Minutes
  471. WBConfCall 2017-12-21-Agenda and Minutes
  472. WBConfCall 2017.01.05-Agenda and Minutes
  473. WBConfCall 2017.01.19-Agenda and Minutes
  474. WBConfCall 2017.02.02-Agenda and Minutes
  475. WBConfCall 2017.02.16-Agenda and Minutes
  476. WBConfCall 2017.03.02-Agenda and Minutes
  477. WBConfCall 2017.03.16-Agenda and Minutes
  478. WBConfCall 2018.01.04-Agenda and Minutes
  479. WBConfCall 2018.01.18-Agenda and Minutes
  480. WBConfCall 2018.01.31-Agenda and Minutes
  481. WBConfCall 2018.02.01-Agenda and Minutes
  482. WBConfCall 2018.02.15-Agenda and Minutes
  483. WBConfCall 2018.03.01-Agenda and Minutes
  484. WBConfCall 2018.03.15-Agenda and Minutes
  485. WBConfCall 2018.04.05-Agenda and Minutes
  486. WBConfCall 2018.04.19-Agenda and Minutes
  487. WBConfCall 2018.05.03-Agenda and Minutes
  488. WBConfCall 2018.05.17-Agenda and Minutes
  489. WBConfCall 2018.06.07-Agenda and Minutes
  490. WBConfCall 2018.06.21-Agenda and Minutes
  491. WBConfCall 2018.07.05-Agenda and Minutes
  492. WBConfCall 2018.07.19-Agenda and Minutes
  493. WBConfCall 2018.08.02-Agenda and Minute
  494. WBConfCall 2018.08.16-Agenda and Minute
  495. WBConfCall 2018.09.06-Agenda and Minutes
  496. WBConfCall 2018.09.20-Agenda and Minutes
  497. WBConfCall 2018.10.04-Agenda and Minutes
  498. WBConfCall 2018.10.18-Agenda and Minutes
  499. WBConfCall 2018.11.01-Agenda and Minutes
  500. WBConfCall 2018.11.15-Agenda and Minutes

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