2018

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Annotation Progress

WormBase GO Annotation Statistics as of December 5, 2018

Manual annotation statistics are summarized in Tables 1 - 3.

Total number of unique manual annotations: 52557 (+18.4% from 2017)

Total number of genes with manual annotations: 7850 (+4.5% from 2017)

Table 1: Summary of C. elegans Manual Biological Process Annotations

Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.

Annotation Group IMP IGI IDA ISS TAS IEP IPI IC NAS ISM ND IBA IKR HEP HMP HGI EXP
WormBase 8031 (454) 3208 (90) 1132 (33) 324 (1) 105 108 (11) 51 63 (10) 22 2 2 0 2 189 0 0 0
UniProt 3483 (831) 2694 (508) 218 (23) 209 29 (3) 23 2 (2) 4 101 0 66 0 0 0 0 0 0
SynGO 48 (37) 69 (44) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10
CACAO 18 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
BHF-UCL 11 0 0 2 0 4 0 0 0 0 0 0 0 0 0 0 0
MGI 4 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0
HGNC 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
GO_Central 2 0 0 0 0 0 0 0 0 0 0 12247 0 0 0 0 0
ParkinsonsUK-UCL 10 (4) 6 (3) 11 2 (1) 0 0 0 0 0 0 0 0 0 0 0 0 0
CAFA 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
SGD 0 0 0 1 (1) 0 0 0 0 0 0 0 0 0 0 0 0 0
Totals 11609 (1326) 5978 (645) 1372 (55) 542 (3) 134 (3) 135 (11) 53 (2) 67 (10) 123 2 68 12247 2 189 0 0 0


Table 2: Summary of C. elegans Molecular Function Annotations

Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.

Annotation Group IMP IGI IDA ISS TAS IPI IC NAS ISM ND IBA ISO IKR
WormBase 172 (11) 32 1899 (214) 643 (7) 33 1355 (5) 21 (1) 4 3 80 0 2 3
IntAct 0 0 0 0 0 2238 (60) 0 0 0 0 0 0 0
UniProt 117 (13) 26 185 (9) 231 (16) 24 (1) 511 (3) 123 50 0 123 0 0 0
CACAO 1 0 7 0 0 0 0 0 0 0 0 0 0
GO_Central 0 0 0 0 0 0 0 0 0 0 9803 0 1
HGNC 0 0 0 2 0 0 0 0 0 0 0 0 0
ParkinsonsUK-UCL 0 0 0 0 0 2 (2) 0 0 0 0 0 0 0
CAFA 1 0 0 0 0 1 0 0 0 0 0 0 0
Totals 291 (24) 58 2091 (223) 876 (23) 57 (1) 4107 (70) 144 (1) 54 3 203 9803 2 4


Table 3: Summary of C. elegans Cellular Component Annotations

Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.

Annotation Group IMP IGI IDA ISS TAS IPI IC NAS ISM ND IBA HDA EXP
WormBase 7 0 5622 (348) 379 27 140 (3) 49 7 4 12 0 545 (452) 0
GO_Central 0 0 0 0 0 0 0 0 0 0 10565 0 0
UniProt 80 (24) 1 742 (104) 219 20 1 16 47 0 116 0 0 0
MGI 0 0 16 0 0 0 0 0 0 0 0 0 0
HGNC 0 0 0 8 0 0 0 0 0 0 0 0 0
BHF-UCL 0 0 7 0 0 0 0 0 0 0 0 0 0
CACAO 0 0 3 0 0 0 0 0 0 0 0 0 0
SynGO 29 0 89 (8) 1 (1) 0 0 0 0 0 0 0 0 2
Totals 116 1 6479 (460) 607 (1) 47 141 (3) 65 54 4 128 10565 545 (452) 2


Table 4: Summary of C. elegans Computational Annotations

Summary Statistics Based on WormBase Release WS268

Genes Stats:

 Genes with GO_term connections  13883 
   Non-IEA-only annotation             1135
   IEA-only annotation                 6293
   Both IEA and non-IEA annotations    6455

GO_term Stats:

 Distinct GO_terms connected to Genes   6094
   Associated by non-IEA only               3482
   Associated by IEA only                    882
   Associated by both IEA and non-IEA       1730
Type of Annotation IEA
Interpro2GO 21465
Other (e.g. Swiss-Prot keyword mapping) 44502