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  • WormBase Model:Map
    [[WormBase Models]] == Model ==
    2 KB (208 words) - 14:36, 4 October 2010
  • WBConfCall 2012.05.17-Agenda and Minutes
    == 1. Life_stage model change == Life_stage model change proposal:
    1 KB (205 words) - 16:55, 17 May 2012
  • AceDB classes
    ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:
    4 KB (568 words) - 11:06, 23 May 2011
  • WS227 Models.wrm
    == Model Changes == Map class
    3 KB (306 words) - 10:00, 26 October 2011
  • WBConfCall 2021.07.01-Agenda and Minutes
    Ticket: https://github.com/WormBase/website/issues/8296 Issue: Genetic Map tool down with the following error: Caught exception in WormBase::Web::Controller::Tools->tools "Could not connect to database acedb _WS280,
    2 KB (347 words) - 14:07, 2 July 2021
  • WebDev 2011.03.23-Agenda and Minutes
    == 1. Model and View development (Norie, Adrian; 10 minutes) == ..., working on mapping, new file under Wormbase API called model map: Oligo, Sequence, Anatomy
    698 bytes (98 words) - 20:11, 23 March 2011
  • WormBase Model:Gene
    [[WormBase Models]] == Model ==
    7 KB (712 words) - 10:40, 4 October 2010
  • WBConfCall 2012.08.16-Agenda and Minutes
    == Model Change Sign Off == [https://github.com/WormBase/website/issues/241 issue 241] "Nucl. Aligner Tool bug."
    2 KB (294 words) - 16:14, 16 August 2012
  • AceOjbect Redesign Page
    == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.
    12 KB (1,559 words) - 18:14, 15 June 2011
  • WormBase Model:Sequence
    [[WormBase Models]] == Model ==
    12 KB (1,258 words) - 09:29, 5 October 2010
  • WormBase Model:Variation
    [[WormBase Models]] == Model ==
    8 KB (853 words) - 23:50, 16 April 2014
  • WS147
    <pre>New release of WormBase WS147, Wormpep147 and Wormrna147 Thu Aug 18 16:59:45 BST 2005 ix) gene_interpolated_map_positions.WS147.gz - Interpolated map positions for each coding/RNA gene
    7 KB (815 words) - 11:09, 21 December 2011
  • WS178
    New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 ix) gene_interpolated_map_positions.WS178.gz - Interpolated map positions for each coding/RNA gene
    7 KB (762 words) - 10:53, 21 December 2011
  • WS216
    New release of WormBase WS216, Wormpep216 and Wormrna216 Tue Jun 29 12:53:35 BST 2010 ix) gene_interpolated_map_positions.WS216.gz - Interpolated map positions for each coding/RNA gene
    7 KB (818 words) - 11:10, 21 December 2011
  • WormBase Model:Clone
    [[WormBase Models]] == Model ==
    10 KB (1,176 words) - 22:24, 18 March 2014
  • WS236 Models.wrm
    Model changes to ?Gene and ?Transposon I'd like to change tags in the ?Gene model and #Gene_history_action hash.
    8 KB (1,073 words) - 15:31, 14 December 2012
  • Meloidogyne hapla
    excerpt from "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.", Opp ...his database, termed HapPep3, available from the Superfamily repository of model organism proteomes ([http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY http://sup
    3 KB (462 words) - 16:11, 15 December 2011
  • WS189
    New release of WormBase WS189, Wormpep189 and Wormrna189 Thu Apr 3 10:28:39 BST 2008 WS189 was built by [Paul Davis (paul.davis@wormbase.org)]
    6 KB (668 words) - 11:01, 21 December 2011
  • WS146
    <pre>New release of WormBase WS146, Wormpep146 and Wormrna146 Thu Jul 28 14:01:21 BST 2005 ix) gene_interpolated_map_positions.WS146.gz - Interpolated map positions for each coding/RNA gene
    6 KB (670 words) - 11:09, 21 December 2011
  • WS201
    New release of WormBase WS201, Wormpep201 and Wormrna201 Wed Mar 25 15:30:27 GMT 2009 ix) gene_interpolated_map_positions.WS201.gz - Interpolated map positions for each coding/RNA gene
    6 KB (665 words) - 16:42, 21 December 2011
  • WS197
    <pre>New release of WormBase WS197, Wormpep197 and Wormrna197 Wed Nov 26 19:40:37 GMT 2008 ix) gene_interpolated_map_positions.WS197.gz - Interpolated map positions for each coding/RNA gene
    6 KB (672 words) - 16:43, 21 December 2011
  • WS117
    <pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 ix) gene_interpolated_map_positions.WS117.gz - Interpolated map positions for each coding/RNA gene
    6 KB (695 words) - 11:17, 21 December 2011
  • WS199
    <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 ix) gene_interpolated_map_positions.WS199.gz - Interpolated map positions for each coding/RNA gene
    6 KB (661 words) - 16:51, 21 December 2011
  • WS195
    ...-<br>http://www.wormbase.org/wiki/index.php/Release_Schedule<br><br>Genome sequence composition:<br>----------------------------<br><br>&nbsp;&nbsp;&nbsp;&nbsp ...open your database, e.g.<br>&nbsp;&nbsp;&nbsp; type 'xace /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more informatio
    11 KB (1,614 words) - 16:52, 21 December 2011
  • WS171
    <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 ix) gene_interpolated_map_positions.WS171.gz - Interpolated map positions for each coding/RNA gene
    6 KB (652 words) - 10:55, 21 December 2011
  • WS204
    New release of WormBase WS204, Wormpep204 and Wormrna204 Fri Jun 26 20:17:06 BST 2009 ix) gene_interpolated_map_positions.WS204.gz - Interpolated map positions for each coding/RNA gene
    6 KB (648 words) - 16:16, 21 December 2011
  • WS203
    New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 ix) gene_interpolated_map_positions.WS203.gz - Interpolated map positions for each coding/RNA gene
    6 KB (662 words) - 16:50, 21 December 2011
  • WS122
    <pre>New release of WormBase WS122, Wormpep122 and Wormrna122 March 26th 2004 ix) gene_interpolated_map_positions.WS122.gz - Interpolated map positions for each coding/RNA gene
    6 KB (721 words) - 11:18, 21 December 2011
  • WS173
    New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 ix) gene_interpolated_map_positions.WS173.gz - Interpolated map positions for each coding/RNA gene
    6 KB (639 words) - 10:55, 21 December 2011
  • WS187
    New release of WormBase WS187, Wormpep187 and Wormrna187 Fri Jan 25 20:22:16 GMT 2008 ix) gene_interpolated_map_positions.WS187.gz - Interpolated map positions for each coding/RNA gene
    6 KB (647 words) - 16:43, 21 December 2011
  • WS198
    <pre>New release of WormBase WS198, Wormpep198 and Wormrna198 Thu Dec 18 19:31:36 GMT 2008 ix) gene_interpolated_map_positions.WS198.gz - Interpolated map positions for each coding/RNA gene
    6 KB (692 words) - 16:51, 21 December 2011
  • WS210
    New release of WormBase WS210, Wormpep210 and Wormrna210 Tue Dec 22 12:35:31 GMT 2009 ix) gene_interpolated_map_positions.WS210.gz - Interpolated map positions for each coding/RNA gene
    6 KB (721 words) - 16:46, 21 December 2011
  • WS208
    New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 ix) gene_interpolated_map_positions.WS208.gz - Interpolated map positions for each coding/RNA gene
    5 KB (581 words) - 16:50, 21 December 2011
  • WS212
    <pre>New release of WormBase WS212, Wormpep212 and Wormrna212 Mon Mar 1 11:51:04 GMT 2010 ix) gene_interpolated_map_positions.WS212.gz - Interpolated map positions for each coding/RNA gene
    5 KB (582 words) - 11:16, 21 December 2011
  • WS175
    New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 ix) gene_interpolated_map_positions.WS175.gz - Interpolated map positions for each coding/RNA gene
    6 KB (680 words) - 10:54, 21 December 2011
  • WS194
    <pre>New release of WormBase WS194, Wormpep194 and Wormrna194 Tue Sep 2 10:54:51 BST 2008 ix) gene_interpolated_map_positions.WS194.gz - Interpolated map positions for each coding/RNA gene
    8 KB (936 words) - 16:48, 21 December 2011
  • WS181
    New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 ix) gene_interpolated_map_positions.WS181.gz - Interpolated map positions for each coding/RNA gene
    8 KB (885 words) - 16:47, 21 December 2011
  • WS142
    <pre>New release of WormBase WS142, Wormpep142 and Wormrna142 Fri Apr 15 18:22:51 BST 2005 ix) gene_interpolated_map_positions.WS142.gz - Interpolated map positions for each coding/RNA gene
    7 KB (720 words) - 11:09, 21 December 2011
  • WS182
    New release of WormBase WS182, Wormpep182 and Wormrna182 Thu Sep 27 11:59:39 BST 2007 ix) gene_interpolated_map_positions.WS182.gz - Interpolated map positions for each coding/RNA gene
    6 KB (716 words) - 16:48, 21 December 2011
  • WS163
    <pre>New release of WormBase WS163, Wormpep163 and Wormrna163 Thu Aug 17 10:49:02 BST 2006 WS163 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (645 words) - 10:57, 21 December 2011
  • WS193
    <pre>New release of WormBase WS193, Wormpep193 and Wormrna193 Fri Jul 25 22:12:15 BST 2008 ix) gene_interpolated_map_positions.WS193.gz - Interpolated map positions for each coding/RNA gene
    8 KB (944 words) - 16:52, 21 December 2011
  • WS192
    <pre>New release of WormBase WS192, Wormpep192 and Wormrna192 Tue Jun 24 11:23:32 BST 2008 ix) gene_interpolated_map_positions.WS192.gz - Interpolated map positions for each coding/RNA gene
    6 KB (763 words) - 10:43, 21 December 2011
  • WS207
    New release of WormBase WS207, Wormpep207 and Wormrna207 Mon Sep 28 11:47:26 BST 2009 ix) gene_interpolated_map_positions.WS207.gz - Interpolated map positions for each coding/RNA gene
    6 KB (675 words) - 16:42, 21 December 2011
  • WS209
    New release of WormBase WS209, Wormpep209 and Wormrna209 Fri Nov 27 11:57:36 GMT 2009 ix) gene_interpolated_map_positions.WS209.gz - Interpolated map positions for each coding/RNA gene
    6 KB (687 words) - 16:50, 21 December 2011
  • WS205
    New release of WormBase WS205, Wormpep205 and Wormrna205 Wed Jul 22 10:29:27 BST 2009 ix) gene_interpolated_map_positions.WS205.gz - Interpolated map positions for each coding/RNA gene
    6 KB (711 words) - 16:31, 21 December 2011
  • WS196
    <pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 ix) gene_interpolated_map_positions.WS196.gz - Interpolated map positions for each coding/RNA gene
    6 KB (748 words) - 16:41, 21 December 2011
  • WS179
    New release of WormBase WS179, Wormpep179 and Wormrna179 Mon Jul 30 12:21:01 BST 2007 ix) gene_interpolated_map_positions.WS179.gz - Interpolated map positions for each coding/RNA gene
    8 KB (843 words) - 10:53, 21 December 2011
  • WS214
    New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 ix) gene_interpolated_map_positions.WS214.gz - Interpolated map positions for each coding/RNA gene
    6 KB (709 words) - 16:49, 21 December 2011
  • WS177
    New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 ix) gene_interpolated_map_positions.WS177.gz - Interpolated map positions for each coding/RNA gene
    9 KB (819 words) - 10:53, 21 December 2011
  • WS154
    <pre>New release of WormBase WS154, Wormpep154 and Wormrna154 Fri Feb 10 12:46:08 GMT 2006 ix) gene_interpolated_map_positions.WS154.gz - Interpolated map positions for each coding/RNA gene
    7 KB (749 words) - 11:08, 21 December 2011
  • WS176
    new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 ix) gene_interpolated_map_positions.WS176.gz - Interpolated map positions for each coding/RNA gene
    7 KB (783 words) - 10:46, 21 December 2011
  • WS206
    New release of WormBase WS206, Wormpep206 and Wormrna206 Fri Aug 28 13:06:57 BST 2009 ix) gene_interpolated_map_positions.WS206.gz - Interpolated map positions for each coding/RNA gene
    7 KB (796 words) - 16:46, 21 December 2011
  • WS213
    New release of WormBase WS213, Wormpep213 and Wormrna213 Tue Mar 23 16:36:18 GMT 2010 ix) gene_interpolated_map_positions.WS213.gz - Interpolated map positions for each coding/RNA gene
    6 KB (764 words) - 16:45, 21 December 2011
  • WS191
    <pre>New release of WormBase WS191, Wormpep191 and Wormrna191 Mon Jun 2 09:50:52 BST 2008 ix) gene_interpolated_map_positions.WS191.gz - Interpolated map positions for each coding/RNA gene
    6 KB (756 words) - 16:53, 21 December 2011
  • WBConfCall 2014.09.03-Agenda and Minutes
    ...y enthusiastic response from Chris and Nicole about including worm disease model data ...ion.WS245.wb, however this is incomplete since it doesn't have the disease model descriptions, and the manually curated OMIM connections, so also sent them
    5 KB (807 words) - 18:27, 4 September 2014
  • WS188
    New release of WormBase WS188, Wormpep188 and Wormrna188 Fri Feb 29 14:53:33 GMT 2008 WS188 was built by [Michael Han (michael.paulini@wormbase.org)]
    6 KB (769 words) - 11:01, 21 December 2011
  • WS211
    <pre>New release of WormBase WS211, Wormpep211 and Wormrna211 Fri Jan 29 13:26:05 GMT 2010 ix) gene_interpolated_map_positions.WS211.gz - Interpolated map positions for each coding/RNA gene
    6 KB (766 words) - 16:38, 21 December 2011
  • WS131
    <pre>New release of WormBase WS131, Wormpep131 and Wormrna131 Tue Sep 7 15:06:49 BST 2004 ix) gene_interpolated_map_positions.WS131.gz - Interpolated map positions for each coding/RNA gene
    6 KB (669 words) - 11:18, 21 December 2011
  • WS180
    New release of WormBase WS180, Wormpep180 and Wormrna180 Fri Aug 17 13:41:37 BST 2007 ix) gene_interpolated_map_positions.WS180.gz - Interpolated map positions for each coding/RNA gene
    7 KB (771 words) - 10:52, 21 December 2011
  • WS107
    <pre>New release of WormBase WS107, Wormpep107 and Wormrna107 Fri Aug 8 13:44:00 BST 2003 ix) gene_interpolated_map_positions.WS107.gz - Interpolated map positions for each coding/RNA gene
    6 KB (659 words) - 11:17, 21 December 2011
  • WS158
    <pre>New release of WormBase WS158, Wormpep158 and Wormrna158 Thu May 4 13:10:59 BST 2006 WS158 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (673 words) - 11:07, 21 December 2011
  • WS112
    <pre>New release of WormBase WS112, Wormpep112 and Wormrna112 Fri Oct 17 18:38:57 BST 2003 ix) gene_interpolated_map_positions.WS112.gz - Interpolated map positions for each coding/RNA gene
    6 KB (735 words) - 11:17, 21 December 2011
  • WS160
    New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 ix) gene_interpolated_map_positions.WS160.gz - Interpolated map positions for each coding/RNA gene
    6 KB (706 words) - 10:50, 21 December 2011
  • WS200
    New release of WormBase WS200, Wormpep200 and Wormrna200 Tue Feb 24 12:51:18 GMT 2009 ix) gene_interpolated_map_positions.WS200.gz - Interpolated map positions for each coding/RNA gene
    6 KB (722 words) - 16:43, 21 December 2011
  • WS172
    <nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 ix) gene_interpolated_map_positions.WS172.gz - Interpolated map positions for each coding/RNA gene
    7 KB (783 words) - 10:55, 21 December 2011
  • WS135
    <pre>New release of WormBase WS135, Wormpep135 and Wormrna135 Thu Nov 11 13:32:31 GMT 2004 ix) gene_interpolated_map_positions.WS135.gz - Interpolated map positions for each coding/RNA gene
    6 KB (689 words) - 11:19, 21 December 2011
  • WS190
    <pre>New release of WormBase WS190, Wormpep190 and Wormrna190 Fri Apr 25 11:03:36 BST 2008 ix) gene_interpolated_map_positions.WS190.gz - Interpolated map positions for each coding/RNA gene
    8 KB (913 words) - 16:46, 21 December 2011
  • WS202
    New release of WormBase WS202, Wormpep202 and Wormrna202 Tue Apr 28 16:02:08 BST 2009 ix) gene_interpolated_map_positions.WS202.gz - Interpolated map positions for each coding/RNA gene
    6 KB (770 words) - 11:06, 21 December 2011
  • WS174
    ix) gene_interpolated_map_positions.WS174.gz - Interpolated map positions for each coding/RNA gene x) clone_interpolated_map_positions.WS174.gz - Interpolated map positions for each clone
    8 KB (938 words) - 10:54, 21 December 2011
  • WS169
    <pre>New release of WormBase WS169, Wormpep169 and Wormrna169 Fri Dec 22 15:09:52 GMT 2006 ix) gene_interpolated_map_positions.WS169.gz - Interpolated map positions for each coding/RNA gene
    8 KB (787 words) - 10:56, 21 December 2011
  • WBConfCall 2012.12.06-Agenda and Minutes
    = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]
    5 KB (752 words) - 18:55, 6 December 2012
  • WS170
    New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 ix) gene_interpolated_map_positions.WS170.gz - Interpolated map positions for each coding/RNA gene
    8 KB (820 words) - 10:51, 21 December 2011
  • WS138
    <pre>New release of WormBase WS138, Wormpep138 and Wormrna138 Thu Jan 20 11:55:33 GMT 2005 ix) gene_interpolated_map_positions.WS138.gz - Interpolated map positions for each coding/RNA gene
    6 KB (740 words) - 11:19, 21 December 2011
  • WormBase Models
    = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WS127
    <pre>New release of WormBase WS127, Wormpep127 and Wormrna127 Tue Jul 6 13:12:51 BST 2004 ix) gene_interpolated_map_positions.WS127.gz - Interpolated map positions for each coding/RNA gene
    7 KB (872 words) - 11:18, 21 December 2011
  • WormBase-Caltech Weekly Calls June 2014
    === WormBase Ontology Browser (WOBr) for WS244 release === * Final data model may still need refinement?
    6 KB (801 words) - 17:29, 2 July 2014
  • WS232
    New release of WormBase WS232 WS232 was built by Michael Paulini [michael.paulini@wormbase.org]
    15 KB (1,729 words) - 14:15, 13 September 2012
  • WS217
    New release of WormBase WS217, Wormpep217 and Wormrna217 Wed Jul 28 09:25:17 BST 2010 ix) gene_interpolated_map_positions.WS217.gz - Interpolated map positions for each coding/RNA gene
    8 KB (915 words) - 11:10, 21 December 2011
  • Feature WishList
    ''This is a running list of proposed features at WormBase'' ...human diseases. This is a benefit both to people who use C. elegans as a model system (most grants at least true to touch on the relevance of given projec
    6 KB (842 words) - 17:01, 21 October 2011
  • User Guide 2010:TOC
    ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]
    4 KB (613 words) - 09:23, 30 June 2011
  • WormBase-Caltech Weekly Calls March 2012
    *WormBase curates phenotypes, pathways, etc. *WormBase Process curation could really benefit from GO's adoption of this strategy
    7 KB (1,019 words) - 20:58, 12 April 2012
  • WormBase-Caltech Weekly Calls February 2015
    * What implications does this have for the WormBase Ontology Browser? * We don't have individual protein/peptide sequence objects, maybe we want them? IDs for domain instances?
    8 KB (1,120 words) - 16:19, 5 March 2015
  • Evidence Code Ontology
    ...ontology/evidenceontology The Evidence and Conclusion Ontology] is used in WormBase to record evidence used for assertions in curation data models. ...ence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.
    6 KB (834 words) - 17:56, 15 June 2020
  • WormBase Newsletter No. 2, February 2003
    == WormBase User's Survey == ...ll have a chance to win a WormBase mug with Thomas BoulinÕs award-winning WormBase Logo.
    7 KB (1,180 words) - 11:00, 21 December 2011
  • Mark up policy
    <http://www.wormbase.org/db/gene/gene?name=mpk-1;class=Gene><br> '''Anonymous gene''' (physical map location). ''F43C1.1'' → Gene Summary page:
    14 KB (2,365 words) - 21:14, 23 July 2013
  • Gene Interaction/archive
    Sequence_interactor ?Sequence XREF Interaction #Interactor_info // Sequence of the interacting gene or protein ...ion #Interactor_info // CDS of the interacting gene or protein (or related sequence)
    50 KB (5,228 words) - 15:10, 21 July 2017
  • WS215
    <pre>New release of WormBase WS215, Wormpep215 and Wormrna215 Thu May 27 18:15:29 BST 2010 ix) gene_interpolated_map_positions.WS215.gz - Interpolated map positions for each coding/RNA gene
    19 KB (1,735 words) - 11:07, 21 December 2011
  • Software Life Cycle: 1. Updating The Development Server
    https://docs.google.com/a/wormbase.org/document/d/1oPpj8d5gibUc-gpUZorl6ETT5baE6mp-v2bMedKauiA/edit# This document describes the process of staging a new release of WormBase on the development server.
    25 KB (3,632 words) - 03:11, 28 October 2013
  • WormBase-Caltech Weekly Calls April 2012
    *Sequence and protein curation: tools, databases (topic-specific; pathways, cancer, e *Tool to identify primers from papers and map them to the genome automatically
    7 KB (1,158 words) - 17:20, 3 May 2012
  • WormBase-Caltech Weekly Calls June 2019
    * Andy asked about protocol pages at WormBase? ...interface with those existing resources to link to relevant protocols from WormBase (and WormBook)
    8 KB (1,121 words) - 14:01, 15 July 2019
  • WS231
    New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    16 KB (1,820 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls February 2021
    * Any more comments about the Wiki page and the proposal? https://wiki.wormbase.org/index.php/WormBase_gene_association_file * Will change ?Expr_pattern model to possibly remove ?Author reference and add in a ?Person reference instead
    9 KB (1,377 words) - 16:36, 4 March 2021
  • WS233
    New release of WormBase WS233 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    17 KB (2,002 words) - 14:17, 13 September 2012
  • Gene Interaction
    ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated. ...Sequence_interactor ?Sequence XREF Interaction #Interactor_info // Sequence of the interacting gene or protein
    53 KB (6,521 words) - 20:51, 7 March 2019
  • Tasks in Progress
    **Documenting elements of WormBase workflow to ease transition for new staff and keep track of changes made **Added information and links for getting started with WormBase
    29 KB (4,254 words) - 20:25, 27 April 2012
  • RNAi
    ...sion, the dsRNA must have a minimum sequence identity with the target gene sequence. Any phenotype(s) resulting from the RNAi-mediated knockdown of a particula == RNAi Data Model ==
    29 KB (4,152 words) - 20:29, 30 July 2019
  • WormBase-Caltech Weekly Calls July 2020
    **overlapped or dicistronic, but has a single sequence name, examples: * Will work on GO-CAMs and build a relevant model(s)
    9 KB (1,369 words) - 22:47, 5 August 2020
  • WBConfCall 2018.06.07-Agenda and Minutes
    Link to SAB meeting wiki page http://wiki.wormbase.org/index.php/2018_Advisory_Board_Meeting *Working on data model for RO led to a discussion at Caltech about how much associated data for ea
    11 KB (1,898 words) - 16:43, 7 June 2018
  • Gene Regulation
    == Interaction Model as of WS231 == ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated.
    59 KB (8,367 words) - 22:00, 14 December 2018
  • WormBase-Caltech Weekly Calls March 2018
    ** Ask authors to submit sequence for sequence features, etc. ...just know what are problematic URLs; should all be handled by main URL www.wormbase.org
    11 KB (1,703 words) - 15:27, 5 April 2018
  • Transgenes
    ==Model Changes== Map ?Map #Map_position //needed for transgenes with no granular mapping, e.g., jus
    29 KB (4,575 words) - 16:23, 3 March 2022
  • SOP for generating GO files for citace and GO consortium uploads
    ****PMIDs that don't map to WBPapers ***CHEBI 33695 does not map to WBMol - WBGene00007626
    23 KB (3,744 words) - 15:12, 23 December 2022
  • FAQs
    ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===
    67 KB (10,954 words) - 09:22, 19 February 2013
  • WBConfCall 2013.06.20-Agenda and Minutes
    ** [https://github.com/WormBase/website/issues/1438 #1438 Track errors on RNA seq GBrowse view] ** [https://github.com/WormBase/website/issues/1091 #1091 OP50 sequence data deposition]
    8 KB (1,291 words) - 21:09, 23 June 2013
  • WormBase-Caltech Weekly Calls 2023
    * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).
    36 KB (4,994 words) - 17:27, 14 February 2024
  • WormBase-Caltech Weekly Calls January 2017
    * Who from WormBase will go? * Working out how inferred annotations propagate from Noctua/LEGO model to GAF
    9 KB (1,377 words) - 16:44, 2 February 2017
  • WormBase-Caltech Weekly Calls November 2013
    * Citace upload deadline will be 6pm Monday, November 25th (added to WormBase calendar) ...well as an output notification for any paper IDs that did not successfully map to a WBPaper ID
    10 KB (1,664 words) - 17:02, 4 December 2013
  • Administration:Installing WormMine
    ...document describes how to install and configure the Intermine instance at WormBase. ...tyle="color: red">'''Previous build examples are available at: http://wiki.wormbase.org/index.php/Website:WormMine_Builds'''</span>
    25 KB (3,652 words) - 23:06, 25 December 2014
  • WS244 Models.wrm
    == Model changes for WS244 == * This cycle we see 5 model changes in 4 classes:
    235 KB (23,325 words) - 10:33, 3 July 2014
  • VariationConciseDescriptions
    ...ercontent.com/WormBase/wormbase-pipeline/master/wspec/models.wrm variation model]<br> *phenotype_ontology ftp://ftp.wormbase.org/pub/wormbase/releases/WS251/ONTOLOGY/phenotype_ontology.WS251.obo (correct for latest r
    36 KB (5,076 words) - 01:38, 2 March 2016
  • COMMENTARY
    ...00 discrete phenotypes, inactivating over 3100 distinct genes. The genomic sequence has been aligned to orthologous sites in the genome of ''C. briggsae'', a s ...elopers group actively invites suggestions for improvement from users, and WormBase's source code is freely available for local installation and improvement.
    30 KB (4,765 words) - 20:03, 11 August 2010
  • UserGuide:Reivsed Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,520 words) - 11:51, 21 October 2015
  • UserGuide:Revised Nomenclature
    .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
    56 KB (9,514 words) - 09:48, 23 October 2015
  • RNAi/archive
    ...ing author; for a list of all labs' two-letter codes look here: http://www.wormbase.org/db/misc/laboratory?name=*;class=laboratory), date of publication (accep ...e sequence to the best of your ability and submit that instead), or actual sequence (e.g. "ACGT") of the probe.
    47 KB (7,989 words) - 23:40, 1 September 2015
  • FP curator comments for St.Louis and Sanger structure correction data type
    [[http://www.wormbase.org/wiki/index.php?title=How_to_FirstPass&action=submit back]] | 2237||cDNA sequence for tmy-1. The accession number of the tmy-1 sequence in the GSDB, DDBJ, EMBL and NCBI is D38539. Those of cDNA clones are as fol
    40 KB (4,083 words) - 23:02, 13 August 2010
  • ISB2014 Stein
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • ISB2014 Session5 Data Integration and Sharing
    Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)
    37 KB (5,533 words) - 19:17, 11 April 2014
  • Gene Ontology
    ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]
    30 KB (3,904 words) - 18:45, 13 May 2020
  • ISB2014 Session4 Microbial Informatics
    Karen Yook/wormbase- Caltech/@wbperson712 ...re divide. Growing divide of data in literature and what we can curate and sequence data.
    29 KB (4,082 words) - 19:15, 11 April 2014
  • Searching WormBase for Information About C. elegans (Wiley)
    ...e) can be directed to related objects of a different type (such as the DNA sequence of the gene, or the cells in which the gene is active). One can also do sea ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).
    103 KB (16,375 words) - 23:39, 30 November 2010
  • Expression Pattern
    Current model (WS280) Sequence ?Sequence XREF Expr_pattern // for clones???
    104 KB (15,303 words) - 19:39, 11 May 2023
  • Pictures
    ==Picture Data Model== ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.
    120 KB (19,719 words) - 16:44, 20 October 2023
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