WS227 Models.wrm

From WormBaseWiki
Jump to: navigation, search

Back

Models Tagged for WS229

This cycle we see a number of changes/additions to the core models file.

Model Changes

-D denotes removal of tag.


Map class


?Map
 Transgene  ?Transgene XREF Map
 Transgene  ?Transgene //sdm added to display gmaps //removed XREF ky 2011
 -D XREF Map


Gene class


?Gene
DB_info Database ?Database ?Database_field ?Accession_number Text //For Darin genbank genpep ids
Human_disease_relevance ?Text #Evidence	 // Ranjana [110601 pad]


Rearrangement class


?Rearrangement
       Introgression


Species class


?Species
removal of majority of tags with some additions.


Sequence class


?Sequence
Checksum


Splice Confirmation hash


#Splice_confirmation
		     RNASeq ?Analysis Int
		     Mass_spec ?Mass_spec_peptide


Sequence collection class introduction


?Sequence_collection Origin	Evidence #Evidence 
				Name ?Text // name that the author gave this collection 
				Species UNIQUE ?Species 
				Strain UNIQUE ?Strain
				Laboratory ?Laboratory
				Database ?Database ?Database_field ?Accession_number
		     History    First_WS_release Int // first WormBase release this assembly was used
				Latest_WS_release Int // latest release where it was used
				Supercedes    UNIQUE ?Sequence_collection XREF Superceded_by
				Superceded_by UNIQUE ?Sequence_collection XREF Supercedes
		     Remark	?Text
		     Status     UNIQUE Live #Evidence
				       Suppressed #Evidence
				       Dead #Evidence
		     Sequences	?Sequence


Homology group class


?Homology_group
 simplification by generating #Homology_type removal of HOPS_group and RIO_group
#Homology_type KOG
               TWOG
               FOG
               LSE
               NOG   //eggNOG - standard cluster
               euNOG //eggNOG - eukaryote cluster
               meNOG //eggNOG - metazoan cluster


Feature class


?Feature
    Defined_by_analysis ?Analysis Int

Int addition


Transgene class


?Transgene

Significant modifications and cleanup. See CVS diff


Movie class


 ?Movie
 -D Transgene ?Transgene XREF Movie


Gene class


 ?Gene
 -D Rescued_by_transgene ?Transgene


Person class


 ?Person
      Affiliation Text // used for storing institute affiliations that aren't in their Address


Address hash


#Address
      Fax           Text


Molecule class


 ?Molecule
      Rearrangement  ?Rearrangement  ?Phenotype  #Evidence  //KY [110602 pad]