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WBConfCall 2012.05.17-Agenda and Minutes
== 1. Life_stage model change == Life_stage model change proposal:

1 KB (205 words) - 16:55, 17 May 2012
BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST
This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, ...earching the ''C. elegans'' genome with a non-worm protein or nucleic acid sequence.

3 KB (401 words) - 20:02, 11 August 2010
Caenorhabditis angaria
== Genome Details == 6 Oct 2010: The latest changes to the assembly are due to be added to WormBase in release WS221.

3 KB (437 words) - 16:02, 15 December 2011
WS185
New release of WormBase WS185, Wormpep185 and Wormrna185 Fri Nov 30 17:11:38 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (680 words) - 07:37, 11 January 2008
Pristionchus pacificus
...ass=Paper WBPaper00031139]). The P pacificus laboratory strain [http://www.wormbase.org/db/gene/strain?name=PS312;class=Strain PS312], used for genomic sequenc == Genome Details ==

4 KB (458 words) - 16:08, 15 December 2011
INTRODUCTION
...e) can be directed to related objects of a different type (such as the DNA sequence of the gene, or the cells in which the gene is active). One can also do sea ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).

2 KB (365 words) - 00:06, 1 December 2010
Meloidogyne hapla
...pt from "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.", Opperman et al. ...th a 54 Mbp genome, ''M. hapla'' represents not only the smallest nematode genome yet completed, but also the smallest metazoan.

3 KB (462 words) - 16:11, 15 December 2011
WormBase Model:RNAi
[[WormBase Models]] == Model ==

3 KB (312 words) - 15:14, 15 July 2010
WS186
New release of WormBase WS186, Wormpep186 and Wormrna186 Fri Dec 21 08:57:59 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (683 words) - 05:51, 3 April 2008
WS183
New release of WormBase WS183, Wormpep183 and Wormrna183 Tue Oct 16 16:18:34 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (800 words) - 10:01, 8 November 2007
WBConfCall 2012.11.01-Agenda and Minutes
1. Model change --ticket #588 David Baillie from Vancouver group would like wormbase to fix the BC strains (gfp expression strains) display, so that users won't

1 KB (182 words) - 10:02, 2 November 2012
WormBase Newsletter No. 6, August 2004
== The C. elegans genome is complete! == ...last month featured a complete genome with no gaps remaining in the genome sequence.

4 KB (621 words) - 15:38, 24 September 2007
Data mining
== Data Model == ...l|About the WormBase data model]] - ''how data is stored and structured at WormBase''

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WS216
New release of WormBase WS216, Wormpep216 and Wormrna216 Tue Jun 29 12:53:35 BST 2010 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (818 words) - 11:10, 21 December 2011
WS184
ew release of WormBase WS184, Wormpep184 and Wormrna184 Thu Nov 8 12:09:34 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (831 words) - 07:36, 11 January 2008
WS147
<pre>New release of WormBase WS147, Wormpep147 and Wormrna147 Thu Aug 18 16:59:45 BST 2005 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (815 words) - 11:09, 21 December 2011
WS195
...- http://www.wormbase.org/wiki/index.php/Release_Schedule Genome sequence composition: ----------------------------    &nbsp ...open your database, e.g.     type 'xace /users/yourname/wormbase' at the command prompt. 5. See the acedb website for more informatio

11 KB (1,614 words) - 16:52, 21 December 2011
WormBase Newsletter No. 3, October 2003
== WormBase Version Freeze == ...WormBase, e. g., WS100 (http://ws100.wormbase.org) and WS110 (http://ws110.wormbase.org). These reference releases are available for perpetuity on dedicated se

10 KB (1,509 words) - 15:40, 24 September 2007
WS204
New release of WormBase WS204, Wormpep204 and Wormrna204 Fri Jun 26 20:17:06 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (648 words) - 16:16, 21 December 2011
WS189
New release of WormBase WS189, Wormpep189 and Wormrna189 Thu Apr 3 10:28:39 BST 2008 WS189 was built by [Paul Davis (paul.davis@wormbase.org)]

6 KB (668 words) - 11:01, 21 December 2011
WS210
New release of WormBase WS210, Wormpep210 and Wormrna210 Tue Dec 22 12:35:31 GMT 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (721 words) - 16:46, 21 December 2011
WBConfCall 2014.07.17-Agenda and Minutes
*http://wiki.wormbase.org/index.php/WBConfCall_2014.07.03-Agenda_and_Minutes#List_of_Existing_WB_ *http://wiki.wormbase.org/index.php/WBConfCall_2014.06.05-Agenda_and_Minutes#nurf-1_Gene_structur

3 KB (464 words) - 09:09, 18 July 2014
WS201
New release of WormBase WS201, Wormpep201 and Wormrna201 Wed Mar 25 15:30:27 GMT 2009 ...tar.gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (665 words) - 16:42, 21 December 2011
WS171
<nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (652 words) - 10:55, 21 December 2011
WS197
<pre>New release of WormBase WS197, Wormpep197 and Wormrna197 Wed Nov 26 19:40:37 GMT 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (672 words) - 16:43, 21 December 2011
WS142
<pre>New release of WormBase WS142, Wormpep142 and Wormrna142 Fri Apr 15 18:22:51 BST 2005 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (720 words) - 11:09, 21 December 2011
WS199
<pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS199.gz - DNA sequences of all genes confirmed b

6 KB (661 words) - 16:51, 21 December 2011
WS205
New release of WormBase WS205, Wormpep205 and Wormrna205 Wed Jul 22 10:29:27 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (711 words) - 16:31, 21 December 2011
WS146
<pre>New release of WormBase WS146, Wormpep146 and Wormrna146 Thu Jul 28 14:01:21 BST 2005 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (670 words) - 11:09, 21 December 2011
WS194
<pre>New release of WormBase WS194, Wormpep194 and Wormrna194 Tue Sep 2 10:54:51 BST 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (936 words) - 16:48, 21 December 2011
WS181
New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (885 words) - 16:47, 21 December 2011
WS203
New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (662 words) - 16:50, 21 December 2011
WS196
<pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (748 words) - 16:41, 21 December 2011
WS177
New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

9 KB (819 words) - 10:53, 21 December 2011
Haemonchus contortus
...ving model nematode ''Caenorhabditis elegans''. This makes it an important model of parasitic nematode biology that is commonly used for experimental studie == Genome Details ==

3 KB (493 words) - 16:03, 15 December 2011
WS173
New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (639 words) - 10:55, 21 December 2011
WS187
New release of WormBase WS187, Wormpep187 and Wormrna187 Fri Jan 25 20:22:16 GMT 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (647 words) - 16:43, 21 December 2011
WBConfCall 2023.02.02-Agenda and Minutes
...at the end of each row of the orthologous protein entry, for each block of sequence shown. *Issue #8925: Long read transcript data for the S. ratti genome.

2 KB (348 words) - 17:52, 2 February 2023
WS209
New release of WormBase WS209, Wormpep209 and Wormrna209 Fri Nov 27 11:57:36 GMT 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (687 words) - 16:50, 21 December 2011
WS198
<pre>New release of WormBase WS198, Wormpep198 and Wormrna198 Thu Dec 18 19:31:36 GMT 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (692 words) - 16:51, 21 December 2011
WS208
New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

5 KB (581 words) - 16:50, 21 December 2011
WS212
<pre>New release of WormBase WS212, Wormpep212 and Wormrna212 Mon Mar 1 11:51:04 GMT 2010 ....gz - latest WormRNA release containing non-coding RNA's in the genome

5 KB (582 words) - 11:16, 21 December 2011
WS175
New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (680 words) - 10:54, 21 December 2011
WS176
new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (783 words) - 10:46, 21 December 2011
WS213
New release of WormBase WS213, Wormpep213 and Wormrna213 Tue Mar 23 16:36:18 GMT 2010 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (764 words) - 16:45, 21 December 2011
WS182
New release of WormBase WS182, Wormpep182 and Wormrna182 Thu Sep 27 11:59:39 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (716 words) - 16:48, 21 December 2011
WS178
New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (762 words) - 10:53, 21 December 2011
WS193
<pre>New release of WormBase WS193, Wormpep193 and Wormrna193 Fri Jul 25 22:12:15 BST 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (944 words) - 16:52, 21 December 2011
WS207
New release of WormBase WS207, Wormpep207 and Wormrna207 Mon Sep 28 11:47:26 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (675 words) - 16:42, 21 December 2011
WS192
<pre>New release of WormBase WS192, Wormpep192 and Wormrna192 Tue Jun 24 11:23:32 BST 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (763 words) - 10:43, 21 December 2011
WS200
New release of WormBase WS200, Wormpep200 and Wormrna200 Tue Feb 24 12:51:18 GMT 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (722 words) - 16:43, 21 December 2011
WS172
<nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (783 words) - 10:55, 21 December 2011
WS179
New release of WormBase WS179, Wormpep179 and Wormrna179 Mon Jul 30 12:21:01 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (843 words) - 10:53, 21 December 2011
WS211
<pre>New release of WormBase WS211, Wormpep211 and Wormrna211 Fri Jan 29 13:26:05 GMT 2010 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (766 words) - 16:38, 21 December 2011
WS214
New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (709 words) - 16:49, 21 December 2011
WS180
New release of WormBase WS180, Wormpep180 and Wormrna180 Fri Aug 17 13:41:37 BST 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (771 words) - 10:52, 21 December 2011
WormBase Newsletter No. 2, February 2003
== WormBase User's Survey == ...ll have a chance to win a WormBase mug with Thomas Boulin√ïs award-winning WormBase Logo.

7 KB (1,180 words) - 11:00, 21 December 2011
WS163
<pre>New release of WormBase WS163, Wormpep163 and Wormrna163 Thu Aug 17 10:49:02 BST 2006 WS163 was built by Paul Davis [paul.davis@wormbase.org]

6 KB (645 words) - 10:57, 21 December 2011
WS206
New release of WormBase WS206, Wormpep206 and Wormrna206 Fri Aug 28 13:06:57 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (796 words) - 16:46, 21 December 2011
WS191
<pre>New release of WormBase WS191, Wormpep191 and Wormrna191 Mon Jun 2 09:50:52 BST 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (756 words) - 16:53, 21 December 2011
WS188
New release of WormBase WS188, Wormpep188 and Wormrna188 Fri Feb 29 14:53:33 GMT 2008 WS188 was built by [Michael Han (michael.paulini@wormbase.org)]

6 KB (769 words) - 11:01, 21 December 2011
WormBase-Caltech Weekly Calls June 2014
=== WormBase Ontology Browser (WOBr) for WS244 release === * Final data model may still need refinement?

6 KB (801 words) - 17:29, 2 July 2014
WS169
<pre>New release of WormBase WS169, Wormpep169 and Wormrna169 Fri Dec 22 15:09:52 GMT 2006 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (787 words) - 10:56, 21 December 2011
WS174
....gz - latest WormRNA release containing non-coding RNA's in the genome http://www.wormbase.org/wiki/index.php/Release_notes

8 KB (938 words) - 10:54, 21 December 2011
WS112
<pre>New release of WormBase WS112, Wormpep112 and Wormrna112 Fri Oct 17 18:38:57 BST 2003 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (735 words) - 11:17, 21 December 2011
WS190
<pre>New release of WormBase WS190, Wormpep190 and Wormrna190 Fri Apr 25 11:03:36 BST 2008 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (913 words) - 16:46, 21 December 2011
WS202
New release of WormBase WS202, Wormpep202 and Wormrna202 Tue Apr 28 16:02:08 BST 2009 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (770 words) - 11:06, 21 December 2011
WS154
<pre>New release of WormBase WS154, Wormpep154 and Wormrna154 Fri Feb 10 12:46:08 GMT 2006 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (749 words) - 11:08, 21 December 2011
WS122
<pre>New release of WormBase WS122, Wormpep122 and Wormrna122 March 26th 2004 ...- latest WormRNA release containing non-coding RNA's in the genome

6 KB (721 words) - 11:18, 21 December 2011
WS131
<pre>New release of WormBase WS131, Wormpep131 and Wormrna131 Tue Sep 7 15:06:49 BST 2004 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (669 words) - 11:18, 21 December 2011
WS138
<pre>New release of WormBase WS138, Wormpep138 and Wormrna138 Thu Jan 20 11:55:33 GMT 2005 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (740 words) - 11:19, 21 December 2011
WS170
New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 ....gz - latest WormRNA release containing non-coding RNA's in the genome

8 KB (820 words) - 10:51, 21 December 2011
WS107
<pre>New release of WormBase WS107, Wormpep107 and Wormrna107 Fri Aug 8 13:44:00 BST 2003 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (659 words) - 11:17, 21 December 2011
WS158
<pre>New release of WormBase WS158, Wormpep158 and Wormrna158 Thu May 4 13:10:59 BST 2006 WS158 was built by Paul Davis [paul.davis@wormbase.org]

6 KB (673 words) - 11:07, 21 December 2011
WS160
New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (706 words) - 10:50, 21 December 2011
WS117
<pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (695 words) - 11:17, 21 December 2011
WS135
<pre>New release of WormBase WS135, Wormpep135 and Wormrna135 Thu Nov 11 13:32:31 GMT 2004 ....gz - latest WormRNA release containing non-coding RNA's in the genome

6 KB (689 words) - 11:19, 21 December 2011
WBConfCall 2011.11.03-Agenda and Minutes
WormBase Site-Wide Conference Call Meeting Minutes *New tracks will be on WormBase

4 KB (609 words) - 20:57, 3 November 2011
User Guide 2010:TOC
...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]

4 KB (613 words) - 09:23, 30 June 2011
WS127
<pre>New release of WormBase WS127, Wormpep127 and Wormrna127 Tue Jul 6 13:12:51 BST 2004 ....gz - latest WormRNA release containing non-coding RNA's in the genome

7 KB (872 words) - 11:18, 21 December 2011
WormBase-Caltech Weekly Calls February 2012
EPIC data into WormBase *Need to modify model and display for data

7 KB (1,070 words) - 17:47, 1 March 2012
WS228
New release of WormBase WS228 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

14 KB (1,572 words) - 10:37, 11 November 2011
WS225
New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data

16 KB (1,674 words) - 11:38, 20 April 2011
WS221
New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data

17 KB (1,758 words) - 16:47, 21 December 2011
Feature WishList
''This is a running list of proposed features at WormBase'' ...human diseases. This is a benefit both to people who use C. elegans as a model system (most grants at least true to touch on the relevance of given projec

6 KB (842 words) - 17:01, 21 October 2011
WS222
New release of WormBase WS222, Wormpep222 and Wormrna222 Mon Dec 20 12:07:08 GMT 2010 WS222 was built by Michael Paulini (michael.paulini@wormbase.org)

15 KB (1,647 words) - 10:06, 22 December 2010
WS234
New release of WormBase WS234 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

15 KB (1,653 words) - 10:13, 18 January 2013
WS224
New release of WormBase WS224, Wormpep224 and Wormrna224 Fri Mar 4 14:58:13 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data

15 KB (1,583 words) - 11:13, 21 December 2011
WS289
New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!

16 KB (1,733 words) - 21:55, 11 May 2023
WBConfCall 2012.12.06-Agenda and Minutes
= Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]

5 KB (752 words) - 18:55, 6 December 2012
WS223
New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data

15 KB (1,610 words) - 11:20, 21 December 2011
WormBase-Caltech Weekly Calls February 2014
** model change to put topics in hierarchical structure. http://www.wormbase.org/tools/wormmine/template.do?name=Anatomy_LS_Genes&scope=all

10 KB (1,485 words) - 18:08, 5 March 2014
WS227
New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

15 KB (1,738 words) - 11:20, 21 December 2011
WS235
New release of WormBase WS235 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

15 KB (1,708 words) - 10:14, 18 January 2013
WS218
New release of WormBase WS218, Wormpep218 and Wormrna218 Tue Aug 24 genomes DIR - contains a sub dir for each WormBase species with

15 KB (1,756 words) - 11:21, 21 December 2011
WS233
New release of WormBase WS233 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

17 KB (2,002 words) - 14:17, 13 September 2012
WormBase Model:Gene
[[WormBase Models]] == Model ==

7 KB (712 words) - 10:40, 4 October 2010
WormBase Literature Curation Workflow
=WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model

9 KB (1,174 words) - 18:30, 29 August 2012
WS284
New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)

17 KB (1,841 words) - 21:54, 11 May 2023
WS231
New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:

16 KB (1,820 words) - 14:15, 13 September 2012

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