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- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
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- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
- [[WormBase Models]] Could poss use ?Analysis and remove this class?543 bytes (47 words) - 09:05, 5 October 2010
- * Can use text: "Compare with other model organisms at <AGR logo>" ...ne Set Enrichment Analysis" in (navigation) Tools menu [https://github.com/WormBase/website/issues/5565 #5565]2 KB (250 words) - 16:12, 19 October 2017
- [[WormBase Models]] ?Analysis700 bytes (98 words) - 09:44, 4 October 2010
- [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa4 KB (394 words) - 08:39, 16 September 2014
- == Model Changes == RNASeq ?Analysis Int3 KB (306 words) - 10:00, 26 October 2011
- [[WormBase Models]] == Model ==2 KB (183 words) - 22:58, 6 December 2010
- == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.12 KB (1,559 words) - 18:14, 15 June 2011
- 6 Oct 2010: The latest changes to the assembly are due to be added to WormBase in release WS221. ...this is done, we are happy to turn the ownership of the genome sequence to WormBase. - Paul Sternberg.3 KB (437 words) - 16:02, 15 December 2011
- New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (662 words) - 16:50, 21 December 2011
- [[WormBase Models]] == Model ==3 KB (272 words) - 16:10, 4 October 2010
- [[WormBase Models]] == Model ==3 KB (318 words) - 00:53, 7 December 2010
- New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes8 KB (885 words) - 16:47, 21 December 2011
- [[WormBase Models]] == Model ==15 KB (1,645 words) - 18:54, 23 January 2014
- = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.16 KB (2,207 words) - 23:06, 9 January 2014
- [[WS241_Models.wrm | WS241 model details]] ...n - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag8 KB (1,246 words) - 15:52, 12 November 2013
- === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model4 KB (622 words) - 16:47, 6 August 2014
- This page contains information pertinent to employees of WormBase. ...VPuB__KmNs5tErO6VXDY/pub New Employee Orientation] -- ''Getting started at WormBase, for employees at any location. Read this first.''12 KB (1,638 words) - 18:25, 18 June 2014
- <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (661 words) - 16:51, 21 December 2011
- [[WormBase Models]] == Model ==12 KB (1,258 words) - 09:29, 5 October 2010
- [[WormBase Models]] == Model ==5 KB (471 words) - 16:07, 4 October 2010
- [[WormBase Models]] == Model ==8 KB (853 words) - 23:50, 16 April 2014
- * Should we provide an analysis of raw data to users to perform their own comparative analyses * David (Angeles) working on an expression data analysis pipeline9 KB (1,490 words) - 15:35, 6 October 2016
- Model in place, but data not yet migrated, but will be in place with WS221. [[Browser_Support_Statement|WormBase Browser Support statement]]1 KB (199 words) - 20:57, 3 November 2010
- WormBase staff can find this document in the "Documentation" directory and edit it t = About Groups at WormBase =5 KB (757 words) - 01:45, 2 June 2014
- = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]5 KB (752 words) - 18:55, 6 December 2012
- =WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model9 KB (1,174 words) - 18:30, 29 August 2012
- Is there a link from WormBase to Alaska, and an announcement about its function? == WormBase resources for non-coding RNA ==3 KB (561 words) - 18:39, 6 February 2020
- ...ving model nematode ''Caenorhabditis elegans''. This makes it an important model of parasitic nematode biology that is commonly used for experimental studie The current assembly shown at WormBase is from August 2009 and provided by a collaboration of the Wellcome Trust S3 KB (493 words) - 16:03, 15 December 2011
- * Ontology term enrichment analysis, using ontologies other than gene ontology ** Would be good to have a single central tool/resource for enrichment analysis10 KB (1,464 words) - 17:09, 13 August 2015
- ...s are being dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will t4 KB (709 words) - 13:27, 5 April 2021
- *We should be able to start configuring for WormBase at that point *Gary will propose appropriate model changes (e.g. Add "silencer" and "enhancer" to method for GBrowse display)7 KB (1,059 words) - 15:37, 1 August 2013
- ''This is a running list of proposed features at WormBase'' == New displays, analysis, and data integration ==6 KB (842 words) - 17:01, 21 October 2011
- == 1. Model changes (Hinxton) == 1a) Variation model sign off7 KB (1,182 words) - 13:50, 20 April 2012
- <pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE6 KB (695 words) - 11:17, 21 December 2011
- ** Should have a guide for users [http://www.wormbase.org/about/Frequently_asked_questions#f--10 Here] * User needs WormBase official response.3 KB (423 words) - 16:35, 7 September 2017
- * What implications does this have for the WormBase Ontology Browser? * A lot of GO protein interaction data to extract; might use ?Analysis objects to track attribution of curation8 KB (1,120 words) - 16:19, 5 March 2015
- ...gff3, transcripts from gff3 has been expanded to represent all species in wormbase (besides any of the "sp" species) ...a for each Ace type has been expanded. Wiki has been updated: http://wiki.wormbase.org/index.php/WormMine#Data_contained_in_WormMine2 KB (361 words) - 16:32, 17 October 2013
- * There shouldn't be model changes (that affect Caltech) for this next upload ...oogle.com/spreadsheets/d/1sS_uAjBJ2r5H90Lam62Ai0HunjwvfjnklkFNrDoNXeU/edit Analysis of current flags and numbers of entries]6 KB (921 words) - 16:52, 4 January 2018
- Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]6 KB (909 words) - 21:56, 21 November 2013
- ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]4 KB (613 words) - 09:23, 30 June 2011
- ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===8 KB (1,147 words) - 15:33, 7 May 2015
- "Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism ...his database, termed HapPep3, available from the Superfamily repository of model organism proteomes ([http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY http://sup3 KB (462 words) - 16:11, 15 December 2011
- ...just know what are problematic URLs; should all be handled by main URL www.wormbase.org === Disease model annotation class display ===11 KB (1,703 words) - 15:27, 5 April 2018
- * ?Construct model === ?Construct model ===8 KB (1,218 words) - 17:46, 2 April 2014
- * Curators will likely need to work with a models "master" to make model changes * http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget5 KB (776 words) - 16:50, 7 January 2016
- New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 http://wwwdev.sanger.ac.uk/Projects/C_elegans/WORMBASE6 KB (706 words) - 10:50, 21 December 2011
- New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (709 words) - 16:49, 21 December 2011
- * WormBook mirror: will move from wormbase.sanger.ac.uk to * WormBase mirror: will go offline next week Friday7 KB (1,220 words) - 15:50, 25 November 2011
- ...nique and powerful in worm, including single cell transcriptomics/sequence analysis, neural circuits, metabolomics, proteomics, ncRNA orthologs. ...inding site (for example, a schematic of promoter etc. on the current gene model).11 KB (1,649 words) - 16:10, 19 July 2018
