Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "WormBase Model:?Database" on this wiki! See also the search results found.
Page title matches
- [[WormBase Models]] == Model ==1 KB (116 words) - 09:36, 4 October 2010
- [[WormBase Models]] == Model ==700 bytes (98 words) - 09:44, 4 October 2010
Page text matches
- [[WormBase Models]] == Model ==1 KB (116 words) - 09:36, 4 October 2010
- ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:4 KB (568 words) - 11:06, 23 May 2011
- [[WormBase Models]] == Model ==930 bytes (84 words) - 14:02, 4 October 2010
- [[WormBase Models]] == Model ==1 KB (141 words) - 10:05, 15 November 2011
- [[WormBase Models]] == Model ==2 KB (133 words) - 09:56, 10 August 2010
- [[WormBase Models]] == Model ==3 KB (275 words) - 01:07, 6 February 2014
- [[WormBase Models]] == Model ==2 KB (184 words) - 08:38, 17 August 2010
- [[WormBase Models]] ''Pick_me_to_call'' -- untouched from existing model3 KB (320 words) - 10:55, 10 December 2010
- [[WormBase Models]] == Model ==2 KB (193 words) - 11:11, 23 May 2011
- The majority of the data stored within WormBase is held in an ACeDb database. ...ned centrally in a file called [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log models.wrm]2 KB (379 words) - 22:06, 10 October 2013
- [[WormBase Models]] == Model ==2 KB (192 words) - 09:45, 5 October 2010
- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
- == Model == DB_info Database ?Database ?Database_field UNIQUE ?Accession_number // the various SRA and GEO IDs for3 KB (252 words) - 16:46, 9 January 2014
- == Model Changes == DB_info Database ?Database ?Database_field ?Accession_number Text //For Darin genbank genpep ids3 KB (306 words) - 10:00, 26 October 2011
- Various Displays of WormBase Data: Most result pages in WormBase contain a submenu below the main menu and WormBase logo. The submenu usually is for different kinds of display. There are thre2 KB (266 words) - 18:26, 17 August 2010
- - Had conversation with GO people about gene model graph, will work on this visualization after WS252 development ...pollo people on handling subtracks, there is an example in the [http://dev.wormbase.org:10004/index.html?data=data%2Fc_elegans_simple&loc=I%3A9861261..9879060&3 KB (478 words) - 15:41, 23 February 2016
- [[WormBase Models]] == Model ==2 KB (305 words) - 08:49, 5 October 2010
- All model changes currently planned for WS247 are on the [http://wiki.wormbase.org/index.php/WS247_Models.wrm WS247 Models wiki page] ...new model for GO annotations that will allow us to have all GO curation in WormBase.2 KB (288 words) - 16:54, 4 December 2014
- [[WormBase Models]] == Model ==3 KB (223 words) - 09:22, 10 August 2010
- WormBase makes use of the following open-source software projects: *[http://www.gmod.org Generic Model Organism Database Project (GMOD)]2 KB (284 words) - 22:43, 16 August 2010
- New release of WormBase WS185, Wormpep185 and Wormrna185 Fri Nov 30 17:11:38 GMT 2007 i) database.WS185.*.tar.gz - compressed data for new release6 KB (680 words) - 07:37, 11 January 2008
- [[WormBase Models]] == Model ==2 KB (200 words) - 15:32, 4 October 2010
- ;item 2 - Database Display Changes For Interactions ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section)3 KB (475 words) - 22:50, 17 December 2010
- New release of WormBase WS186, Wormpep186 and Wormrna186 Fri Dec 21 08:57:59 GMT 2007 i) database.WS186.*.tar.gz - compressed data for new release6 KB (683 words) - 05:51, 3 April 2008
- == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.12 KB (1,559 words) - 18:14, 15 June 2011
- [[WormBase Models]] == Model ==3 KB (312 words) - 15:14, 15 July 2010
- New release of WormBase WS183, Wormpep183 and Wormrna183 Tue Oct 16 16:18:34 BST 2007 i) database.WS183.*.tar.gz - compressed data for new release7 KB (800 words) - 10:01, 8 November 2007
- * File in /usr/local/wormbase/databases/{RELEASE}/orthology and automatically generated by orthology data ...h the associations available from the orthology data compile -- /usr/local/wormbase/databases/{RELEASE}/orthology/go_id2omim_ids.txt4 KB (583 words) - 20:22, 29 July 2011
- ==database URL/URIs== **website flat file only with only database name and description stored in acedb2 KB (361 words) - 16:32, 17 October 2013
- ew release of WormBase WS184, Wormpep184 and Wormrna184 Thu Nov 8 12:09:34 GMT 2007 i) database.WS184.*.tar.gz - compressed data for new release7 KB (831 words) - 07:36, 11 January 2008
- [[WormBase Models]] == Model ==4 KB (350 words) - 09:32, 17 June 2013
- ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of ''C. briggsae'' and ''C. remanei'' ...vailable in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).2 KB (365 words) - 00:06, 1 December 2010
- ** During the call earlier we talked about the ?Paper model having ...ized that we can also get ORCID for authors from pubmed, so we should also model for that. In ?Person that's modeled like3 KB (492 words) - 18:48, 17 March 2021
- This protocol presents how to conduct a general search of WormBase ...king on the Home link at the top left of any WormBase Web page (http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png).3 KB (545 words) - 19:56, 11 August 2010
- [[WormBase Models]] == Model ==5 KB (471 words) - 16:07, 4 October 2010
- [[WormBase Models]] == Model ==5 KB (484 words) - 10:42, 10 August 2010
- ==C. elegans as a model system to study disease and disease genes== ...g of new ones, based on the published literature, where elegans is used to model the biology of a disease and/or the orthologous elegans gene function is st5 KB (782 words) - 20:56, 8 January 2020
- ...is elegans] and related nematodes. WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and compute *November 2020 -- ''[https://wiki.wormbase.org/images/Elections_Subcommittee_Proposal_toWBvote.docx Election Subcommit5 KB (646 words) - 17:11, 25 November 2020
- ...l to discuss this with Ranjana to see if there is a better solution at the database level to make the downstream work easier. https://github.com/WormBase/website/issues/71871 KB (165 words) - 18:42, 15 August 2019
- ==Movie Data Model== DB_INFO ?Database ?Database_field Text #added Oct2013 DR5 KB (814 words) - 18:48, 17 September 2018
- [[WormBase Models]] ...model and unused tags for WS245 elegans data from pre-merged BUILD/elegans database.4 KB (394 words) - 08:39, 16 September 2014
- ...und the world. WormBase includes the abstracts from these meetings in our database. ...getting the regional and topical meeting abstracts into postgres and then WormBase.1 KB (201 words) - 16:34, 15 October 2012
- * Chrome failing to download ftp data [https://github.com/WormBase/website/issues/8087 #8087] ** Harmonized Alliance model would be persistent and integrated.4 KB (743 words) - 12:22, 5 March 2021
- [[WormBase Models]] DB_info Database ?Database ?Database_field ?Text //links molecule to ChEBI, CTD, KEGG, UniProt6 KB (543 words) - 23:29, 15 March 2016
- * ?Construct model === ?Construct model ===8 KB (1,218 words) - 17:46, 2 April 2014
- Database ?Database ?Database_field ?Accession Model changes to ?Gene and ?Transposon8 KB (1,073 words) - 15:31, 14 December 2012
- *Daniela spoke with Mihail about getting pictures from their database *Linking to Yuji Kohara's database (NEXTDB)?4 KB (650 words) - 17:08, 1 September 2011
- The WS126 release of WormBase last month featured a complete genome with no gaps remaining in the genome == WormBase launches the 'WormBook' project ==4 KB (621 words) - 15:38, 24 September 2007
- ...cial wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditi WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and compute4 KB (507 words) - 08:46, 8 October 2014
- This document describes the WebApp requirements for: ''a new WormBase Molecule widget''. <br/> These requirements originate from: [[User:Kyook|Karen Yook]], a CalTech-based WormBase curator.1 KB (209 words) - 19:57, 25 July 2012
- === Database migration === * Further discussed capturing/registering when a curator has reviewed a gene model but not made a change5 KB (741 words) - 10:57, 21 August 2015
- *BioGRID, Gene Orienteer, Interolog database, etc. *Interolog database5 KB (847 words) - 17:49, 1 March 2012
- * There are papers in the WormBase collection that are used as paper evidence for some concise descriptions === Database changes to WormBase ===6 KB (823 words) - 19:38, 2 January 2014
- <pre>New release of WormBase WS146, Wormpep146 and Wormrna146 Thu Jul 28 14:01:21 BST 2005 i) database.WS146.*.tar.gz - compressed data for new release6 KB (670 words) - 11:09, 21 December 2011
- Elsevier would like to put a link to Wormbase via adding a logo on the ScienceDirect pages, in the same fashion they are The link to Wormbase will point to the paper page showing the referenced curated data3 KB (427 words) - 18:31, 3 October 2013
- * Collecting model/pathway diagrams from papers and reviews: should we make ?Picture objects f === WormBase Ontology Browser ===6 KB (974 words) - 17:28, 3 September 2014
- New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 i) database.WS175.*.tar.gz - compressed data for new release6 KB (680 words) - 10:54, 21 December 2011
- [[WormBase Models]] == Old Model ==12 KB (1,431 words) - 19:06, 20 March 2012
- New release of WormBase WS187, Wormpep187 and Wormrna187 Fri Jan 25 20:22:16 GMT 2008 i) database.WS187.*.tar.gz - compressed data for new release6 KB (647 words) - 16:43, 21 December 2011
- * Curators will likely need to work with a models "master" to make model changes * http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget5 KB (776 words) - 16:50, 7 January 2016
- <pre>New release of WormBase WS192, Wormpep192 and Wormrna192 Tue Jun 24 11:23:32 BST 2008 i) database.WS192.*.tar.gz - compressed data for new release6 KB (763 words) - 10:43, 21 December 2011
- Ticket: https://github.com/WormBase/website/issues/8296 ...exception in WormBase::Web::Controller::Tools->tools "Could not connect to database acedb _WS280, host: 7e85f19c6634"2 KB (347 words) - 14:07, 2 July 2021
- [[WormBase Models]] == Model ==4 KB (410 words) - 17:08, 17 August 2010
- * What implications does this have for the WormBase Ontology Browser? * WS247 database will not be ready with enough time for Ranjana and James to incorporate int8 KB (1,120 words) - 16:19, 5 March 2015
- === Datomic model for external links === * Hinxton will work on simplifying the model3 KB (493 words) - 16:08, 16 March 2017
- ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]4 KB (613 words) - 09:23, 30 June 2011
- <pre>New release of WormBase WS198, Wormpep198 and Wormrna198 Thu Dec 18 19:31:36 GMT 2008 i) database.WS198.*.tar.gz - compressed data for new release6 KB (692 words) - 16:51, 21 December 2011
- -rw-rw-rw- wormbase.conf ...(henceforth "the web application") and a series of external models in the WormBase::API namespace.10 KB (1,357 words) - 14:03, 19 June 2014
- <pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 i) database.WS196.*.tar.gz - compressed data for new release6 KB (748 words) - 16:41, 21 December 2011
- *We have frequent database dumps that can be read for stats AMIGO2 (Wormbase Ontology Browser)5 KB (850 words) - 15:32, 5 September 2013
- New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 i) database.WS160.*.tar.gz - compressed data for new release6 KB (706 words) - 10:50, 21 December 2011
- New release of WormBase WS204, Wormpep204 and Wormrna204 Fri Jun 26 20:17:06 BST 2009 i) database.WS204.*.tar.gz - compressed data for new release6 KB (648 words) - 16:16, 21 December 2011
- *** database migration *** ParaSite and integration with WormBase central.3 KB (438 words) - 07:19, 6 October 2014
- <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 i) database.WS199.*.tar.gz - compressed data for new release6 KB (661 words) - 16:51, 21 December 2011
- *Does CIT need to worry about consistency of gene IDs over database builds? *WormBase communicate/work with DCC personnel for data wrangling during post-DCC era?4 KB (612 words) - 17:13, 1 December 2011
- New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 i) database.WS173.*.tar.gz - compressed data for new release6 KB (639 words) - 10:55, 21 December 2011
- ...ntology] is used in WormBase to describe relations between entities in the database, e.g. genes and GO terms. *The Relations Ontology was first incorporated into WormBase with the WS267 release.3 KB (453 words) - 18:27, 20 September 2023
- ...parate AGR orthology pipeline to link human genes and their orthologs from model organisms. !Project_name: WormBase (WB) Version WS25810 KB (1,599 words) - 18:53, 24 January 2019
- <nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 i) database.WS172.*.tar.gz - compressed data for new release7 KB (783 words) - 10:55, 21 December 2011
- <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 i) database.WS171.*.tar.gz - compressed data for new release6 KB (652 words) - 10:55, 21 December 2011
- New release of WormBase WS206, Wormpep206 and Wormrna206 Fri Aug 28 13:06:57 BST 2009 i) database.WS206.*.tar.gz - compressed data for new release7 KB (796 words) - 16:46, 21 December 2011
- <pre>New release of WormBase WS191, Wormpep191 and Wormrna191 Mon Jun 2 09:50:52 BST 2008 i) database.WS191.*.tar.gz - compressed data for new release6 KB (756 words) - 16:53, 21 December 2011
- New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 i) database.WS203.*.tar.gz - compressed data for new release6 KB (662 words) - 16:50, 21 December 2011
- <pre>New release of WormBase WS163, Wormpep163 and Wormrna163 Thu Aug 17 10:49:02 BST 2006 WS163 was built by Paul Davis [paul.davis@wormbase.org]6 KB (645 words) - 10:57, 21 December 2011
- <pre>New release of WormBase WS147, Wormpep147 and Wormrna147 Thu Aug 18 16:59:45 BST 2005 i) database.WS147.*.tar.gz - compressed data for new release7 KB (815 words) - 11:09, 21 December 2011
- <pre>New release of WormBase WS158, Wormpep158 and Wormrna158 Thu May 4 13:10:59 BST 2006 WS158 was built by Paul Davis [paul.davis@wormbase.org]6 KB (673 words) - 11:07, 21 December 2011
- New release of WormBase WS209, Wormpep209 and Wormrna209 Fri Nov 27 11:57:36 GMT 2009 i) database.WS209.*.tar.gz - compressed data for new release6 KB (687 words) - 16:50, 21 December 2011
- <pre>New release of WormBase WS197, Wormpep197 and Wormrna197 Wed Nov 26 19:40:37 GMT 2008 i) database.WS197.*.tar.gz - compressed data for new release6 KB (672 words) - 16:43, 21 December 2011
- New release of WormBase WS201, Wormpep201 and Wormrna201 Wed Mar 25 15:30:27 GMT 2009 i) database.WS201.*.tar.gz - compressed data for new release6 KB (665 words) - 16:42, 21 December 2011
- New release of WormBase WS205, Wormpep205 and Wormrna205 Wed Jul 22 10:29:27 BST 2009 i) database.WS205.*.tar.gz - compressed data for new release6 KB (711 words) - 16:31, 21 December 2011
- = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.16 KB (2,207 words) - 23:06, 9 January 2014
- '''Field 4 Experimental model for (dis_humandoid):''' <br/ > '''Field 9 OMIM disease for Exp Mod(dis_dbexpmod):''' Database for Exp Mod <br/ >14 KB (2,085 words) - 20:27, 7 July 2022
- ...l have setup the community curation portal page on staging: http://staging.wormbase.org/about/userguide/submit_data#0--10 == GO term enrichment (TE) tool for WormBase ==3 KB (539 words) - 10:56, 5 June 2015
- new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 i) database.WS176.*.tar.gz - compressed data for new release7 KB (783 words) - 10:46, 21 December 2011
- New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 i) database.WS214.*.tar.gz - compressed data for new release6 KB (709 words) - 16:49, 21 December 2011
- New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 i) database.WS181.*.tar.gz - compressed data for new release8 KB (885 words) - 16:47, 21 December 2011
- New release of WormBase WS182, Wormpep182 and Wormrna182 Thu Sep 27 11:59:39 BST 2007 i) database.WS182.*.tar.gz - compressed data for new release6 KB (716 words) - 16:48, 21 December 2011
- * Protein aligner appears to be broken: https://github.com/WormBase/website/issues/7793 **Formally refer to the standard HGNC human gene in disease model curation and other types of curation3 KB (529 words) - 18:26, 16 July 2020
- New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 i) database.WS208.*.tar.gz - compressed data for new release5 KB (581 words) - 16:50, 21 December 2011
- <pre>New release of WormBase WS212, Wormpep212 and Wormrna212 Mon Mar 1 11:51:04 GMT 2010 i) database.WS212.*.tar.gz - compressed data for new release5 KB (582 words) - 11:16, 21 December 2011
