User contributions
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Jump to navigationJump to search- 19:34, 3 November 2010 diff hist +62 TAIR →Curation - Sentence Input and Annotation
- 19:14, 3 November 2010 diff hist +2 TAIR
- 17:40, 3 November 2010 diff hist +28 TAIR →From WormBase documentation:
- 17:23, 3 November 2010 diff hist 0 TAIR →Script explanation - Juancarlos
- 17:23, 3 November 2010 diff hist 0 TAIR →Specifications for Curation Pipeline
- 17:22, 3 November 2010 diff hist +382 TAIR →Script explanation - Juancarlos
- 17:21, 3 November 2010 diff hist +1,236 TAIR →Textpresso Search for Cellular Component Annotations
- 17:53, 2 November 2010 diff hist +121 N-Z titles current
- 17:40, 2 November 2010 diff hist +65 Journals current
- 17:35, 2 November 2010 diff hist +329 Journals
- 17:00, 2 November 2010 diff hist +75 Journals
- 16:58, 2 November 2010 diff hist 0 2010 - Paper Pipeline: Documentation and Instructions
- 16:53, 2 November 2010 diff hist +14 Adding pmid Identifier to Paper Object current
- 16:52, 2 November 2010 diff hist +2 N-Z titles
- 16:50, 2 November 2010 diff hist +26 Journals
- 16:37, 2 November 2010 diff hist +2 Journals
- 16:37, 2 November 2010 diff hist +107 Journals
- 16:28, 2 November 2010 diff hist +1 Adding pmid Identifier to Paper Object
- 16:28, 2 November 2010 diff hist 0 Adding pmid Identifier to Paper Object
- 16:27, 2 November 2010 diff hist +2 Adding pmid Identifier to Paper Object
- 16:27, 2 November 2010 diff hist +834 Adding pmid Identifier to Paper Object
- 16:21, 2 November 2010 diff hist +26 N-Z titles
- 16:20, 2 November 2010 diff hist +211 N-Z titles
- 16:14, 2 November 2010 diff hist +24 Journals
- 15:22, 2 November 2010 diff hist +28 Adding pmid Identifier to Paper Object
- 15:16, 2 November 2010 diff hist +6 Adding pmid Identifier to Paper Object
- 15:15, 2 November 2010 diff hist -8 Adding pmid Identifier to Paper Object
- 15:14, 2 November 2010 diff hist +1,213 N Adding pmid Identifier to Paper Object Created page with ''''Instructions for adding a PMID identifier to a Paper Object''' If a journal's papers are currently indexed by PubMed, but we don't have the PMID, you can add it using the pap…'
- 14:59, 2 November 2010 diff hist +44 2010 - Paper Pipeline: Documentation and Instructions
- 19:22, 28 October 2010 diff hist +53 TAIR →Features to Implement for Future Use
- 19:21, 28 October 2010 diff hist +161 TAIR →Textpresso Search for Cellular Component Annotations
- 17:57, 28 October 2010 diff hist +278 Gene Ontology →New Terms
- 17:50, 28 October 2010 diff hist +19 TAIR →Paper Acquisition
- 16:30, 28 October 2010 diff hist +1 TAIR →Curation - Sentence Input and Annotation
- 16:29, 28 October 2010 diff hist +104 TAIR →Curation - Sentence Input and Annotation
- 16:24, 28 October 2010 diff hist +152 TAIR →Curation - Sentence Input and Annotation
- 16:22, 28 October 2010 diff hist -4 TAIR →Textpresso Search for Cellular Component Annotations
- 16:22, 28 October 2010 diff hist +4 TAIR →Textpresso Search for Cellular Component Annotations
- 16:21, 28 October 2010 diff hist +3 TAIR →Textpresso Search for Cellular Component Annotations
- 16:20, 28 October 2010 diff hist +161 TAIR →Curation - Sentence Input and Annotation
- 16:15, 28 October 2010 diff hist +105 TAIR →Curation - Output to Gene Association File
- 16:12, 28 October 2010 diff hist +14 TAIR →Textpresso Search for Cellular Component Annotations
- 16:11, 28 October 2010 diff hist +391 TAIR
- 16:06, 28 October 2010 diff hist -2 TAIR
- 16:05, 28 October 2010 diff hist +392 TAIR
- 15:58, 28 October 2010 diff hist +137 TAIR →Textpresso Search for Cellular Component Annotations
- 15:55, 28 October 2010 diff hist +147 TAIR →Textpresso Search for Cellular Component Annotations
- 15:48, 28 October 2010 diff hist -10 TAIR →Specifications for Curation Pipeline
- 15:47, 28 October 2010 diff hist +307 TAIR →Curation - Output to Gene Association File
- 15:30, 28 October 2010 diff hist +8 TAIR →Pipeline Specifics
- 15:29, 28 October 2010 diff hist +1,710 TAIR →Specifications for Curation Pipeline
- 14:41, 28 October 2010 diff hist -15 TAIR →Specifications for Curation Pipeline
- 14:41, 28 October 2010 diff hist -95 TAIR
- 21:26, 26 October 2010 diff hist +182 Mf hmm tool →Sentence Classification
- 21:24, 26 October 2010 diff hist +189 Mf hmm tool →List of papers page
- 21:24, 26 October 2010 diff hist -190 Mf hmm tool →Sentence Classification
- 21:22, 26 October 2010 diff hist +4 Mf hmm tool →Curation in OA
- 21:22, 26 October 2010 diff hist +270 Mf hmm tool
- 20:56, 26 October 2010 diff hist +168 Mf hmm tool →Sentence Classification
- 20:55, 26 October 2010 diff hist -53 Mf hmm tool
- 20:54, 26 October 2010 diff hist +29 Mf hmm tool
- 20:53, 26 October 2010 diff hist -7 Mf hmm tool →List of papers page
- 20:53, 26 October 2010 diff hist +1 Mf hmm tool →List of papers page
- 20:53, 26 October 2010 diff hist -1 Mf hmm tool →List of papers page
- 20:52, 26 October 2010 diff hist +260 Mf hmm tool →List of papers page
- 20:49, 26 October 2010 diff hist +134 Mf hmm tool →List of papers page
- 20:47, 26 October 2010 diff hist +472 Mf hmm tool →List of papers page
- 19:58, 26 October 2010 diff hist +244 Mf hmm tool →Curation page
- 19:57, 26 October 2010 diff hist +270 Mf hmm tool →Curation page
- 19:56, 26 October 2010 diff hist +171 Mf hmm tool →Curation page
- 19:54, 26 October 2010 diff hist -3 Mf hmm tool →List of papers page
- 19:54, 26 October 2010 diff hist +3 Mf hmm tool →List of papers page
- 19:54, 26 October 2010 diff hist +298 Mf hmm tool →List of papers page
- 19:49, 26 October 2010 diff hist +62 Mf hmm tool →Login page
- 19:48, 26 October 2010 diff hist +91 Mf hmm tool →Login page
- 22:30, 7 October 2010 diff hist -2 Mf hmm tool
- 22:30, 7 October 2010 diff hist -4 Mf hmm tool
- 22:29, 7 October 2010 diff hist -1 Mf hmm tool →=List of papers page
- 22:28, 7 October 2010 diff hist +342 Mf hmm tool →Login page
- 22:19, 7 October 2010 diff hist +18 Mf hmm tool →Specifications/Instructions for the mf_hmm tool
- 22:18, 7 October 2010 diff hist +258 Mf hmm tool →Intended Use
- 22:15, 7 October 2010 diff hist +73 Mf hmm tool
- 22:06, 7 October 2010 diff hist +670 Mf hmm tool
- 21:06, 7 October 2010 diff hist +25 N Mf hmm tool Created page with 'Back to Gene Ontology'
- 21:05, 7 October 2010 diff hist +18 Gene Ontology
- 21:04, 7 October 2010 diff hist +76 Gene Ontology →Semi-Automated Methods of Curation
- 20:00, 28 September 2010 diff hist +5 Adding Papers not in PubMed
- 21:02, 22 September 2010 diff hist +72 WormBase
- 21:01, 22 September 2010 diff hist +114 WormBase
- 17:50, 22 September 2010 diff hist +875 Gene Ontology
- 16:03, 20 September 2010 diff hist +292 Phenotype2GO Mappings File current
- 20:17, 13 September 2010 diff hist +28 Regional and Topical Meetings
- 20:16, 13 September 2010 diff hist 0 Regional and Topical Meetings
- 20:16, 13 September 2010 diff hist +5 Regional and Topical Meetings
- 20:15, 13 September 2010 diff hist +802 N Regional and Topical Meetings Created page with 'On alternate years from the International C. elegans Meeting at UCLA, there are specific regional and topical meetings held at various locations around the world. WormBase inclu…'
- 20:01, 13 September 2010 diff hist +6 Getting Meeting Abstracts into WormBase current
- 20:01, 13 September 2010 diff hist +6 Getting Meeting Abstracts into WormBase
- 19:59, 13 September 2010 diff hist -3 Getting Meeting Abstracts into WormBase
- 19:59, 13 September 2010 diff hist +82 N Getting Meeting Abstracts into WormBase Created page with '#International C. elegans Meetings - UCLA ##Regional and Topical Meetings ###Other'
- 19:14, 30 August 2010 diff hist +2 Dumping Script
- 19:13, 30 August 2010 diff hist +133 Dumping Script
- 18:53, 30 August 2010 diff hist +223 Dumping Script
- 18:51, 30 August 2010 diff hist +20 Paper Pipeline
- 19:40, 27 August 2010 diff hist -3 WormBase
- 19:38, 27 August 2010 diff hist +526 WormBase
- 20:13, 4 August 2010 diff hist +58 Caltech documentation
- 19:57, 4 August 2010 diff hist -14 Caltech documentation →Datatype Curation
- 19:57, 4 August 2010 diff hist -11 Caltech documentation →Datatype Curation
- 19:56, 4 August 2010 diff hist -130 Postgres management Blanked the page current
- 19:50, 4 August 2010 diff hist +5 Postgres management
- 19:49, 4 August 2010 diff hist +32 Postgres management
- 19:48, 4 August 2010 diff hist +85 N File:WBGene update pipeline.ppt Flow diagram of WBGene info updates from latest WormBase release (WS) and Nameserver. current
- 19:45, 4 August 2010 diff hist +93 N Postgres management Created page with 'Flow diagram of WBGene info updates from the latest WormBase release (WS) and the Nameserver:'
- 19:12, 4 August 2010 diff hist +25 Caltech documentation →Datatype Curation
- 21:29, 24 June 2010 diff hist +1,647 Phenotype2GO Paper Inclusion List
- 19:49, 24 June 2010 diff hist +219 Phenotype2GO Paper Inclusion List
- 19:35, 24 June 2010 diff hist +28 Phenotype2GO Paper Inclusion List
- 19:31, 24 June 2010 diff hist +373 N Phenotype2GO Paper Inclusion List Created page with 'All papers in the list have the curation flag 'Phenotype2GO' in the paper_editor.cgi WBPaper00004402 WBPaper00004403 WBPaper00004540 WBPaper00004651 WBPaper00004769 WBPaper…'
- 19:27, 24 June 2010 diff hist +39 Gene Ontology →Phenotype2GO Mappings for Biological Process Annotation (Variation2GO and RNAiPhenotype2GO)
- 13:35, 15 April 2010 diff hist +39 Removing Dead Genes from Papers →Removing Dead Genes Going Forward: Using the New Paper Editor and the Dumping Script
- 13:34, 15 April 2010 diff hist +29 Removing Dead Genes from Papers →Removing Dead Genes Going Forward: Using the New Paper Editor and the Dumping Script
- 13:34, 15 April 2010 diff hist +620 Removing Dead Genes from Papers →Removing Dead Genes: Using the New Paper Editor
- 13:30, 15 April 2010 diff hist +930 Removing Dead Genes from Papers →Removing Dead Genes: Transferring Data from Old to New Postgres Tables
- 13:23, 15 April 2010 diff hist -2 Removing Dead Genes from Papers
- 13:22, 15 April 2010 diff hist +129 N Removing Dead Genes from Papers New page: ==Removing Dead Genes: Transferring Data from Old to New Postgres Tables== ===Removing Dead Genes: Using the New Paper Editor===
- 13:21, 15 April 2010 diff hist +37 2010 - Paper Pipeline: Documentation and Instructions
- 15:05, 11 April 2010 diff hist +68 Attaching Genes to Papers
- 15:04, 11 April 2010 diff hist +2 Attaching Genes to Papers
- 15:04, 11 April 2010 diff hist +438 N Attaching Genes to Papers New page: ==Genes Attached upon Paper Approval== When papers are added to postgres using the Enter New Papers function of the Paper Editor, the corresponding abstracts are scanned, via a script, fo...
- 14:57, 11 April 2010 diff hist +31 2010 - Paper Pipeline: Documentation and Instructions
- 11:50, 9 April 2010 diff hist +5 N-Z titles
- 18:45, 8 April 2010 diff hist +69 Dumping Script
- 18:45, 8 April 2010 diff hist +296 N Dumping Script New page: The dumping script will check for any dead gene IDs attached to papers and comment them out of the .ace file until they are fixed/deleted from postgres by a curator. The AQL query that fi...
- 18:43, 8 April 2010 diff hist +20 2010 - Paper Pipeline: Documentation and Instructions
- 18:34, 8 April 2010 diff hist +28 Merging Papers →New Protocol
- 18:25, 8 April 2010 diff hist +28 Merging Papers →New Protocol
- 15:41, 8 April 2010 diff hist +151 N Meeting abstracts New page: Meeting_abstracts will get the not_designated tag with respect to the primary/not_primary/not_designated tags. Back to Entering New Paper Objects current
- 15:40, 8 April 2010 diff hist +40 Gazette articles
- 15:39, 8 April 2010 diff hist -33 Gazette articles
- 15:39, 8 April 2010 diff hist +142 N Gazette articles New page: Gazette_articles will get the not_designated tag with respect to the primary/not_primary/not_designated tags. Back to Entering New Papers
- 18:25, 7 April 2010 diff hist +96 DictyBase
- 18:09, 7 April 2010 diff hist +603 Merging Papers →New Protocol
- 18:05, 7 April 2010 diff hist +201 Merging Papers →New Protocol
- 17:56, 7 April 2010 diff hist +212 Merging Papers →New Protocol
- 17:53, 7 April 2010 diff hist +234 Merging Papers →New Protocol
- 17:49, 7 April 2010 diff hist +43 Merging Papers →New Protocol
- 17:46, 7 April 2010 diff hist +1 Merging Papers →New Protocol
- 17:43, 7 April 2010 diff hist +99 Merging Papers →New Protocol
- 17:31, 7 April 2010 diff hist +308 Merging Papers →New Protocol
- 17:23, 7 April 2010 diff hist +213 Merging Papers →New Protocol
- 17:21, 7 April 2010 diff hist +336 Merging Papers →New Protocol
- 17:10, 7 April 2010 diff hist +385 Merging Papers →New Protocol
- 16:54, 7 April 2010 diff hist +39 Merging Papers
- 16:52, 7 April 2010 diff hist +20 2010 - Paper Pipeline: Documentation and Instructions
- 16:51, 7 April 2010 diff hist +39 Books
- 16:50, 7 April 2010 diff hist +308 N Books New page: '''Background:''' When we started using the new Paper Types, we included a new Type, Book. In the past, both books and book chapters were given the Type Book_chapter. In the ?Paper mode...
- 16:50, 7 April 2010 diff hist +62 Entering New Paper Objects
- 16:49, 7 April 2010 diff hist +72 Entering New Paper Objects
- 16:48, 7 April 2010 diff hist -31 2010 - Paper Pipeline: Documentation and Instructions
- 16:47, 7 April 2010 diff hist -308 Creating New Book Objects Removing all content from page current
- 16:47, 7 April 2010 diff hist +68 Entering New Paper Objects
- 16:46, 7 April 2010 diff hist +6 Entering New Paper Objects →''' ''C. elegans'' Papers from PubMed'''
- 15:12, 7 April 2010 diff hist +50 Entering New Paper Objects →What Types of Papers Get Entered
- 15:01, 7 April 2010 diff hist +11 Entering New Paper Objects →What Types of Papers Get Entered
- 15:00, 7 April 2010 diff hist +37 Entering New Paper Objects →What Types of Papers Get Entered
- 14:59, 7 April 2010 diff hist +16 Entering New Paper Objects →What Types of Papers Get Entered
- 14:58, 7 April 2010 diff hist +358 Entering New Paper Objects
- 14:41, 7 April 2010 diff hist -1 Entering New Paper Objects
- 14:41, 7 April 2010 diff hist +215 N Entering New Paper Objects New page: == Entering New Paper Ojbects == Different types of papers can be entered into postgres in different ways, depending upon the type and subject matter of the paper and whether or not the ...
- 14:34, 7 April 2010 diff hist +28 Creating New Book Objects
- 14:33, 7 April 2010 diff hist +33 2010 - Paper Pipeline: Documentation and Instructions
- 16:16, 5 April 2010 diff hist +280 N Creating New Book Objects New page: '''Background:''' When we started using the new Paper Types, we included a new Type, Book. In the past, both books and book chapters were given the Type Book_chapter. In the ?Paper mode...
- 16:09, 5 April 2010 diff hist +58 N 2010 - Paper Pipeline: Documentation and Instructions New page: Back to Paper Pipeline #Creating New Book Objects
- 16:08, 5 April 2010 diff hist +15 Paper Pipeline
- 16:07, 5 April 2010 diff hist +44 Paper Pipeline
- 16:06, 5 April 2010 diff hist +1 N-Z titles
- 16:03, 5 April 2010 diff hist +25 N-Z titles
- 16:31, 24 March 2010 diff hist +2 Reference Genome Reports - Annotation Coverage
- 16:31, 24 March 2010 diff hist +27 Reference Genome Reports - Annotation Coverage
- 16:29, 24 March 2010 diff hist -4 Reference Genome Reports - Annotation Coverage
- 16:29, 24 March 2010 diff hist +2 Reference Genome Reports - Annotation Coverage
- 16:28, 24 March 2010 diff hist -4 Reference Genome Reports - Annotation Coverage
- 16:28, 24 March 2010 diff hist +10 Reference Genome Reports - Annotation Coverage
- 16:27, 24 March 2010 diff hist 0 Reference Genome Reports - Annotation Coverage
- 16:26, 24 March 2010 diff hist +5 Reference Genome Reports - Annotation Coverage
- 16:25, 24 March 2010 diff hist +1,552 Reference Genome Reports - Annotation Coverage
- 16:06, 24 March 2010 diff hist +870 N Reference Genome Reports - Annotation Coverage New page: '''Reference Genome Reports - Annotation Coverage''' Purpose: To report to the GO Consortium the extent of annotation coverage for Reference Genome genes. Annotation Coverage Criteria: ...
- 16:00, 24 March 2010 diff hist +1 Gene Ontology →Scripts
- 15:58, 24 March 2010 diff hist +64 Gene Ontology
- 11:59, 23 March 2010 diff hist +39 Journals
- 11:52, 23 March 2010 diff hist +327 Journals
- 17:13, 22 March 2010 diff hist +13 Phenotype2GO Mappings Sept. 09
- 16:44, 22 March 2010 diff hist +28 Phenotype2GO Mappings Sept. 09
- 16:32, 22 March 2010 diff hist +28 Phenotype2GO Mappings File
- 16:32, 22 March 2010 diff hist +27 Phenotype2GO Mappings File
- 16:31, 22 March 2010 diff hist +19 Phenotype2GO Mappings File
- 15:09, 15 March 2010 diff hist -9 Gene Ontology →Annotation Practices
- 15:07, 15 March 2010 diff hist -2 Gene Ontology →Annotation Practices
- 15:07, 15 March 2010 diff hist +256 Gene Ontology →Annotation Practices
- 15:04, 15 March 2010 diff hist +26 Gene Ontology
- 19:01, 8 March 2010 diff hist +279 N Genes mentioned along with word in Figure or Table category New page: Right now, this seems to be the most promising approach. 'Over-association' will come from things like markers. 'Under-association' will come from lists of genes in figures or tables, bu...
- 14:28, 7 March 2010 diff hist +109 Associating genes with papers
- 16:41, 1 March 2010 diff hist +38 WormBase
- 14:36, 24 February 2010 diff hist -18 Lung Development Targets (November 2009 - February 2010) →December Targets
- 14:35, 24 February 2010 diff hist +26 Lung Development Targets (November 2009 - February 2010) →December Targets
- 14:34, 24 February 2010 diff hist +3 Lung Development Targets (November 2009 - February 2010) →December Targets
- 11:49, 24 February 2010 diff hist +30 Lung Development Targets (November 2009 - February 2010) →December Targets
- 17:20, 18 February 2010 diff hist +1 Journals
- 17:16, 18 February 2010 diff hist +27 N-Z titles
- 17:13, 18 February 2010 diff hist +15 Journals
- 16:57, 18 February 2010 diff hist +20 Journals
- 15:41, 14 February 2010 diff hist +83 Merging Papers
- 19:14, 11 February 2010 diff hist +11 Lung Development Targets (November 2009 - February 2010)
- 19:08, 11 February 2010 diff hist -1 Lung Development Targets (November 2009 - February 2010) →November Targets
- 19:06, 11 February 2010 diff hist +825 Lung Development Targets (November 2009 - February 2010) →November Targets
- 18:49, 11 February 2010 diff hist +13 Lung Development Targets (November 2009 - February 2010) →November Targets
- 18:48, 11 February 2010 diff hist +151 Lung Development Targets (November 2009 - February 2010)
- 18:42, 8 February 2010 diff hist +7 New Paper Model - Model and Changes to Pipeline
- 15:42, 8 February 2010 diff hist -4 New Paper Model - Model and Changes to Pipeline
- 14:05, 8 February 2010 diff hist +2 Journals
- 14:05, 8 February 2010 diff hist +26 Journals
- 14:04, 8 February 2010 diff hist +144 N-Z titles
- 18:08, 7 February 2010 diff hist +134 Lung Development Targets (November 2009 - February 2010)
- 17:35, 7 February 2010 diff hist +22 Lung Development Targets (November 2009 - February 2010)
- 17:33, 7 February 2010 diff hist +30 Lung Development Targets (November 2009 - February 2010)
- 17:08, 7 February 2010 diff hist +86 Lung Development Targets (November 2009 - February 2010)
- 15:14, 7 February 2010 diff hist +38 Lung Development Targets (November 2009 - February 2010)
- 00:08, 7 February 2010 diff hist +38 Ontology Annotator
- 00:08, 7 February 2010 diff hist +2 Ontology Annotator
- 00:05, 7 February 2010 diff hist +1 Ontology Annotator
- 23:52, 6 February 2010 diff hist +98 Ontology Annotator
- 23:38, 6 February 2010 diff hist +19 Gene Ontology
- 22:59, 6 February 2010 diff hist +21 Lung Development Targets (November 2009 - February 2010)
- 22:49, 6 February 2010 diff hist +38 Lung Development Targets (November 2009 - February 2010)
- 22:02, 6 February 2010 diff hist +141 Ontology Annotator →Wish List and Bug Reports, Jan-Feb 2010
- 22:00, 6 February 2010 diff hist +27 Lung Development Targets (November 2009 - February 2010)
- 21:28, 6 February 2010 diff hist +143 Lung Development Targets (November 2009 - February 2010)
- 21:11, 6 February 2010 diff hist -21 Lung Development Targets (November 2009 - February 2010)
- 21:10, 6 February 2010 diff hist +2 Lung Development Targets (November 2009 - February 2010)
- 21:08, 6 February 2010 diff hist +37 Lung Development Targets (November 2009 - February 2010)
- 19:56, 6 February 2010 diff hist +573 N Lung Development Targets (November 2009 - February 2010) New page: Lung Development Gene Annotation Progress {|border="1" cell spacing="0" cellpadding="5" align="center" !Panther ID !C. elegans Target(s) !Curator !Papers !Biological Process !Molecular Fu...
- 19:45, 6 February 2010 diff hist -339 Gene Ontology
- 19:42, 6 February 2010 diff hist +46 Gene Ontology
- 19:41, 6 February 2010 diff hist +182 Gene Ontology
- 19:56, 5 February 2010 diff hist -1 Type - mapping incoming Type
- 18:57, 5 February 2010 diff hist +102 Primary data Tag
- 18:46, 5 February 2010 diff hist +82 Type - mapping incoming Type
- 18:45, 5 February 2010 diff hist +77 Primary data Tag
- 18:43, 5 February 2010 diff hist 0 Primary data Tag
- 13:17, 5 February 2010 diff hist -1 New Paper Model - Model and Changes to Pipeline