Caltech documentation
From WormBaseWiki
Contents
Manual first-pass
- Manual flagging pipelines: First-pass flagging
- Instructions for the first pass curator:
- Datatypes flagged through the first-pass forms: Datatypes flagged
Automation and Text Mining Approaches
Datatype Curation
- Antibody
- citace data assignments
- Concise Descriptions
- Gene Ontology
- Gene-Paper Associations
- Gene Regulation
- Gene Interaction
- Paper Pipeline
- Phenotypes
- RNAi
- Transgenes
- Molecule
- Process pages
- Pictures
- Expression Pattern
- Gene Class Descriptions
postgres
Caltech weekly meetings
Conference Calls
Software/tool development and technical issues
Textpresso
SVMs for First Pass Curation
GSA markup
- GSA Markup SOP
- GSA linking pipeline
- Entity classes and problems
- Future Entities for markup
- GSA Markup Meeting Notes