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- ...stating ‚"we did RNAi against unc-22" is not enough information for proper curation. We need to unabigiously assign the sequence used in an experiment. In the [[Category:Curation]]530 bytes (85 words) - 18:32, 16 August 2010
- [[Category:Curation]]354 bytes (43 words) - 17:47, 17 August 2010
- [[Category:Curation]]350 bytes (44 words) - 19:41, 10 August 2010
- [[Category:Curation]]1 KB (166 words) - 19:35, 10 August 2010
- =Author Curation=1,002 bytes (141 words) - 23:09, 30 April 2011
- ...y this page should point to a table that is a comprehensive display of the curation status of a given paper as well as a table that can show how far we've come *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi curation status]6 KB (841 words) - 08:24, 24 October 2014
- 10 KB (1,194 words) - 16:35, 13 December 2013
- ===Community Curation=== ...one sort of data type and do not really fall under the remit of Community Curation.1 KB (165 words) - 15:47, 10 April 2015
- = Paper for Curation =7 KB (1,004 words) - 17:50, 13 February 2017
- ...or meeting the hard-code constraints we requested. For variation-phenotype curation, these constraints require that each entry contain a curator, an object typ [[Category:Phenotype Curation]]5 KB (782 words) - 20:35, 24 September 2010
- 1. It appears on the first-pass curation checkout page. The paper is in grey until a pdf or document is available fo ...d for a specific data type is stored in postgres and can be mined from the curation status form [http://wiki.wormbase.org/index.php/New_2012_Curation_Status he3 KB (561 words) - 21:38, 15 August 2013
- [[Category:Phenotype Curation]]9 KB (1,321 words) - 21:59, 3 May 2020
- ==Examples of novel groups of curation issues.==291 bytes (53 words) - 10:19, 21 January 2011
- #REDIRECT [[Noctua model curation tracking table]]50 bytes (6 words) - 20:06, 19 October 2017
- 819 bytes (130 words) - 10:04, 9 November 2010
- =WormBase Curated Data Types and Curation Methods= ...that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''9 KB (1,174 words) - 18:30, 29 August 2012
- Curation Status & Statistics Form (2012) Above is a screenshot of the main page of the Curation Status Form. The user/curator is requested to identify who they wish to log144 KB (18,174 words) - 19:56, 21 January 2021
- = Specifications for Gene - GO Curation Status Form = ...ns protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.3 KB (487 words) - 20:29, 18 March 2019
- Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette15 KB (2,658 words) - 19:16, 11 April 2014
- 11 KB (1,225 words) - 19:03, 19 March 2018
- *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi Curation status form] has lists, but not completely up-to-date. ! Number of papers flagged manually (from curation status form)5 KB (746 words) - 18:57, 10 August 2010
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- ...plementation using the CCC categories, submit the resulting sentences to a curation form, make annotations, and download the annotations in either a simple thr ...Textpresso using their chosen criteria and export the sentences to the CCC curation form.17 KB (2,749 words) - 20:04, 21 January 2011
- 17 KB (2,104 words) - 22:44, 17 December 2014
- Effective Textpresso searches, and subsequent curation, require the most complete lists of gene and protein names possible. In addition, some types of curation may require matching gene names only, others matching protein names only, o5 KB (857 words) - 23:28, 23 August 2011
Page text matches
- ...want to make researchers aware of the information required for the proper curation of different data sets so they can include this in their publications or pr #[[RNAi curation]]907 bytes (125 words) - 21:27, 19 June 2015
- == AGR Curation Interface Demo == * [https://curation.alliancegenome.org/ Production site]579 bytes (76 words) - 15:42, 16 June 2022
- ==Old phenotype curation pages== #[[Phenote+ Phenotype Curation|Phenote curation tool]]902 bytes (104 words) - 19:51, 20 November 2014
- [[Category:Phenotype Curation]] [[Category:Phenote curation tool]]479 bytes (64 words) - 20:53, 24 September 2010
- ===GO Curation Pipeline at FlyBase=== ==Textpresso for Cellular Component Curation for FlyBase==904 bytes (127 words) - 18:02, 21 July 2011
- ====Topic curation==== *We can then publish important news/topic curation results from the release notes, to the website851 bytes (131 words) - 18:06, 16 October 2014
- ** Gene curation strategies ** Gene curation toools (Web-Apollo)1 KB (175 words) - 10:58, 19 June 2015
- [[Category:Curation]]57 bytes (7 words) - 18:20, 16 August 2010
- [[Category:Curation]]55 bytes (5 words) - 18:44, 11 August 2010
- * Community curation tags134 bytes (16 words) - 11:57, 2 January 2020
- [[Category:Curation]]87 bytes (12 words) - 17:40, 16 August 2010
- #REDIRECT [[Noctua model curation tracking table]]50 bytes (6 words) - 20:06, 19 October 2017
- == 13:30 – 15:30 Sequence curation and analysis, other nematodes == *Curation Tool: Gary Williams ([[Media:9-2008-SAB-Williams.ppt|slides]])2 KB (242 words) - 17:09, 6 January 2011
- [[Category:Curation]]82 bytes (10 words) - 23:22, 13 August 2010
- Based on data curation71 bytes (11 words) - 21:51, 11 May 2011
- '''General specifications for Textpresso-based CCC Curation''' '''Curation'''2 KB (204 words) - 19:18, 17 November 2011
- ...Ms require positive and negative training sets. In the case of first pass curation, this means ..., in part, on the data type. Previous experience with SVMs for first pass curation2 KB (278 words) - 22:31, 16 August 2010
- == Topic curation == == Topic curation ==2 KB (309 words) - 19:45, 5 December 2013
- * Breakdown website to widgets, so that they can be discussed from curation level. Widgets may have different names in each MOD, but they have the same * Besides the google doc for all curation efforts, UMOD also need a technology catalog so that developers know what s2 KB (339 words) - 18:43, 8 April 2016
- 1. Allele curation Need an AGR-friendly curation system1 KB (165 words) - 18:42, 15 August 2019
- **[[First-pass to Curation|Quick summary]] *[[Curation Tasks]]3 KB (325 words) - 17:36, 25 April 2023
- ...stating ‚"we did RNAi against unc-22" is not enough information for proper curation. We need to unabigiously assign the sequence used in an experiment. In the [[Category:Curation]]530 bytes (85 words) - 18:32, 16 August 2010
- * qPCR data curation ...ges for ?Expression_cluster and ?Analysis to accommodate the need for qPCR curation.2 KB (253 words) - 14:58, 13 March 2014
- ...lable, scripts will run to generate and populate the tables needed for the curation form. ...mail alert telling them that there is/is not new source data available for curation.1 KB (201 words) - 20:17, 29 August 2013
- ===Community Curation=== ...one sort of data type and do not really fall under the remit of Community Curation.1 KB (165 words) - 15:47, 10 April 2015
- [[Category:Curation]]184 bytes (28 words) - 18:47, 17 August 2010
- ...sc/wormbase-presentations/2005.11-SAB-CSHL/AP-KVA-RK-2005-SAB-curation.ppt Curation update, Andre Petcherski, Kimberly Van Auken, Ranjana Kishore] ...rmbase-presentations/2005.11-SAB-CSHL/CB-2005-SAB-Phenotypes.ppt Phenotype curation, Carol Bastiani]2 KB (238 words) - 12:04, 20 January 2011
- ...nt (CC) Terms. This index is organized alphabetically and based solely on curation. ...nd annotations to Protein2GO and return a status message at the top of the curation page.3 KB (431 words) - 14:55, 8 July 2014
- ***Monday - dictyBase will identify PDFs for curation ...l process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra2 KB (376 words) - 20:49, 28 June 2012
- ...> identification and automatic extraction of text for <span class="SpellE">curation</span>. <span style="mso-spacerun: yes"></span>In <span class="SpellE">dat ...ch as <span class="SpellE">Phenote</span> for further <span class="SpellE">curation</span>.<span style="mso-spacerun: yes"></span>4 KB (573 words) - 23:46, 13 August 2010
- == Brugia - update on annotation and curation effort == MP - Outlined protocol developed at Hinxton for curation of Brugia malayi gene models. DB ready for handover to WashU. WashU will lo1 KB (228 words) - 16:54, 6 July 2012
- [[Category:Curation]]174 bytes (26 words) - 23:17, 13 August 2010
- [3] You'll note that curation spans releases. With regards to the week counter, I'm not sure if this was ==== Curation ====2 KB (328 words) - 13:05, 2 June 2014
- #[[Author Curation]] [[Category:Curation]]1 KB (130 words) - 21:21, 15 March 2021
- All papers in the list have the curation flag 'Phenotype2GO' in the paper_editor.cgi [[Category:Curation]]2 KB (313 words) - 18:20, 16 August 2010
- [[Category:Curation]]195 bytes (25 words) - 17:50, 16 August 2010
- '''1030 - 1130''' Sequence curation including all those genomes Sequence Curation in C. elegans and curation tools- Paul Davis3 KB (357 words) - 20:30, 6 June 2014
- [[Category:Phenotype Curation]]313 bytes (41 words) - 20:45, 24 September 2010
- 2) Data integration: The curation tool Wormbase provides to approve the annotations could produce a GAF file.223 bytes (34 words) - 17:30, 19 April 2011
- ...get associations made as quickly as possible (better for users, helps for curation). [[Category:Curation]]986 bytes (140 words) - 19:42, 10 August 2010
- == Phenotype Curation (Ranjana / Chris) ==1 KB (155 words) - 17:01, 19 November 2015
- *manual curation is supposed to start as soon as [[NGASP|NGASP]] predictions for the new ass *EMBL/GenBank submission is supposed to start together with manual curation.2 KB (324 words) - 19:34, 11 August 2010
- == Topic Curation ==1 KB (164 words) - 17:33, 15 January 2015
- == GO-CAM model/pathway curation with orthology data == == Curation program for Summer undergraduate students ==2 KB (303 words) - 18:23, 16 April 2020
- =WormBase Curated Data Types and Curation Methods= ...that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''9 KB (1,174 words) - 18:30, 29 August 2012
- == S. ratti community curation == ...the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?2 KB (373 words) - 17:59, 2 March 2023
- ** We may allow the community to use APOLLO for curation within a year. ** WormBase is one of the few MODs doing sequence-based curation. We need to identify who else is doing this so that we can collaborate. Thi1 KB (229 words) - 16:31, 2 November 2023
- *For example, creating new categories for curation of GO Molecular Function terms related to enzymatic activity by selecting s ...read for another purpose, such as concise descriptions or reference genome curation.3 KB (425 words) - 22:35, 16 August 2010
- [[Category:Curation]]434 bytes (49 words) - 16:49, 5 June 2013
- === Curation === ...e under version control, maintained by a combination of scripts and manual curation3 KB (405 words) - 13:18, 15 January 2016
- [[Category:Curation]]303 bytes (47 words) - 23:22, 13 August 2010
- [[Category:Curation]]317 bytes (48 words) - 18:21, 16 August 2010
- === Strain curation at Caltech ===1 KB (241 words) - 18:19, 7 February 2019
- ::Kimberly Van Auken (interested in how to coordinate with BioGrid curation efforts) == [[Working Group:Curation Priorities|Curation Priorities]] ==2 KB (306 words) - 15:01, 14 January 2016
- [[Category:Curation]]354 bytes (43 words) - 17:47, 17 August 2010
- * KH: Second phase of the migration was the data capture and curation * (discussion about current vs delayed updates of curation databases)1 KB (152 words) - 16:10, 5 April 2018
- [[Category:Curation]]350 bytes (44 words) - 19:41, 10 August 2010
- ...na will discuss how to condense and streamline a presentation on community curation ** We should have a talk about LEGO curation and pathways; Kimberly happy to present4 KB (640 words) - 19:07, 11 February 2016
- [[Category:Curation]]473 bytes (68 words) - 18:50, 10 August 2010
- *dictyBase (Bob) will send Textpresso PMIDs for CCC curation every Monday '''Results File to Curation Tool'''1 KB (205 words) - 17:10, 8 November 2012
- === Sequence curation for phenotypic alleles in papers === ...Oliver Hobert : some published alleles are falling through the cracks for curation; paper mentioned is missing sequence and phenotype3 KB (436 words) - 15:07, 22 July 2019
- * How should we prioritize RNAi versus other gene function curation? === 10:45 - 12:15 Sequence analysis and curation ===4 KB (462 words) - 08:54, 8 October 2014
- [[Category:Phenote curation tool]] [[Category:Phenotype Curation]]1 KB (190 words) - 20:54, 24 September 2010
- == Allele / variation curation == ==Allele curation==4 KB (613 words) - 17:56, 16 January 2020
- ...ration is underway, but Noctua is still under beta testing. Noctua is a GO curation tool that “allows curators to connect together multiple annotations to gi3 KB (457 words) - 19:24, 7 July 2016
- ** 09.45 Caenorhabditis sequence curation - Gary Williams ** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli3 KB (438 words) - 07:19, 6 October 2014
- [[Category:Curation]]437 bytes (67 words) - 18:57, 16 August 2010
- As said before we are currently running Variation curation (molecular details) in a maintenence mode where -Can we make an easy to use curation tool/submission form? Mary Ann made one. It's available and easy to extract3 KB (441 words) - 17:15, 1 August 2019
- *Discussion of what features are commonly used in the curation status form252 bytes (35 words) - 17:49, 12 May 2022
- * WashU sequence curation hand over to Hinxton: stlace is now taken over by Hinxton. All C. elegans c * Progress report: Caltech can dump out curation status info from postgres database. We can also do comparision from release2 KB (232 words) - 09:58, 2 August 2013
- [[Category:Curation]]640 bytes (97 words) - 22:32, 16 August 2010
- * Aim 2. Gene-centric curation. None of the paragraphs mention any work or plan for migrating that data cl * Aim 4 now lists worm-specific curation and tools we want to continue to support, outside Alliance2 KB (326 words) - 16:00, 8 September 2022
- #[[Clone CCC curation form for dictyBase - Juancarlos, Kimberly]] #[[dicty curation - Petra, Kimberly]]3 KB (439 words) - 21:25, 6 November 2012
- curation best practices are widespread or saving much curation time when they do participate3 KB (564 words) - 19:15, 10 August 2010
- ==Examples of novel groups of curation issues.==291 bytes (53 words) - 10:19, 21 January 2011
- *How do we assign new strain IDs at the point of curation? ...ID already exists; if not, can request a new strain ID to use in postgres curation database.5 KB (816 words) - 16:43, 17 May 2018
- [[Category:Curation]]372 bytes (60 words) - 20:54, 10 August 2010
- ...e is an idea to make the human disease data more accessible and extend the curation. Discussion items: * Curation3 KB (450 words) - 16:07, 7 August 2014
- ...mber), should we be creating new papers at the alliance first or in the WB curation database and then importing them in. ...WB to Alliance. Paper approval and acquisition are the first steps in our curation process and we should make sure we've got a good plan in place before we ma1 KB (229 words) - 16:05, 15 July 2021
- == Themed Curation == = Curation Focus ideas for themed releases =2 KB (361 words) - 16:32, 17 October 2013
- [[Category:Curation]]608 bytes (98 words) - 18:31, 11 August 2010
- == Sequence Curation == ...base.org/group/caltech/topics topics]; The literature and large-scale data curation team at the California Institute of Technology.5 KB (757 words) - 01:45, 2 June 2014
- This project is broken down into three main sections: central database, curation, and website. ...gies to work with the new database system: Hinxton Curration tool, CalTech curation tool and Datomic API's for the website (Catalyst)5 KB (842 words) - 19:41, 17 February 2016
- ...y this page should point to a table that is a comprehensive display of the curation status of a given paper as well as a table that can show how far we've come *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi curation status]6 KB (841 words) - 08:24, 24 October 2014
- In the context of first pass curation, SVMs are used to classify documents with respect to the type of data they770 bytes (117 words) - 13:08, 20 November 2009
- ...some paper types from the searches would more accurately reflect the real curation pipeline. [[Category:Curation]]2 KB (259 words) - 18:08, 16 August 2010
- Phenotype curation at WormBase entails the assignment of a phenotype term from the ''C. elegan ===Sources for allele phenotype curation===7 KB (1,148 words) - 23:02, 23 October 2014
- [[Category:Curation]]653 bytes (82 words) - 19:01, 10 August 2010
- == Genetomic / curation database ==2 KB (296 words) - 01:51, 5 September 2015
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- 1. It appears on the first-pass curation checkout page. The paper is in grey until a pdf or document is available fo ...d for a specific data type is stored in postgres and can be mined from the curation status form [http://wiki.wormbase.org/index.php/New_2012_Curation_Status he3 KB (561 words) - 21:38, 15 August 2013
- [[First-pass to Curation]]<br> ...~postgres/cgi-bin/curator_first_pass.cgi Example of new curator first-pass curation.cgi]2 KB (241 words) - 23:04, 13 August 2010
- ** similar problem to redundancy during GO curation * different approaches between the databases for curation/prediction2 KB (213 words) - 18:30, 1 February 2018
- **3e i. Data Curation ***Does the resource provide documentation of the data curation process/deposition workflow? Please describe, with a url link to public doc2 KB (233 words) - 15:30, 21 July 2022
- ...nd Chris joined a Teaching Curation workshop to teach undergraduates about curation. Chris is currently processing the student submissions to remove redundanci ===WormBase Paper Curation charge===3 KB (525 words) - 17:20, 4 April 2024
- === LEGO Curation === * Curation Stats numbers spreadsheet6 KB (857 words) - 16:01, 2 October 2014
- [[Category:Curation]]271 bytes (29 words) - 22:34, 11 August 2010
- ...nformation we need for curation and search and retrieval functions for the curation form.2 KB (261 words) - 17:08, 16 April 2013
- ...ng that we have been thinking of how to rationalise is the TierI / Tier II curation split.''' '''PS - We should approach curation de novo and forget the history'''3 KB (564 words) - 17:27, 20 December 2012
- *Chris' will present flagging and curation pipeline overview *GO curation pipeline3 KB (349 words) - 19:25, 18 January 2013
- * Focusing on curation process (as opposed to publication process) ** Curation4 KB (544 words) - 16:22, 5 January 2017
- ==Curation analysis features== ...e || automating newmutant sentence identification/extraction for phenotype curation.6 KB (1,024 words) - 23:02, 13 August 2010
- * Summary of curation work - this summary should be curator driven, in some cases the summary wil |'''Data class/type'''||'''Curation focus'''||'''Postgres Tables'''<br>([[all OA tables | oa tables]])||'''Cura4 KB (580 words) - 18:13, 6 October 2017
- [[Category:Curation]]633 bytes (76 words) - 18:59, 10 August 2010
- [[Category:Curation]]635 bytes (76 words) - 19:01, 10 August 2010
- ...stion: do we want to take 'functional annotation' papers out of Textpresso/Curation pipelines? === Topic Curation ===6 KB (823 words) - 19:38, 2 January 2014
- * Need to chase up the 111 legacy pending curation gk alleles * Need to chase up the 766 legacy pending curation ok alleles2 KB (306 words) - 08:41, 7 June 2019
- [[Category:Curation]]533 bytes (81 words) - 23:09, 13 August 2010
- * <b>Gene-structure curation</b> * Process and pathway curation and display (Karen; 10 minutes)5 KB (644 words) - 22:02, 23 January 2013
- [[Category:Curation]]856 bytes (106 words) - 18:22, 16 August 2010
- = Specifications for Gene - GO Curation Status Form = ...ns protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.3 KB (487 words) - 20:29, 18 March 2019
- ==Pick a paper and access the curation form== * Access the curation.cgi from the WBPaperID page itself4 KB (751 words) - 23:40, 13 August 2010
- ...there is a new model for GO annotations that will allow us to have all GO curation in WormBase. * GO curation model change2 KB (288 words) - 16:54, 4 December 2014
- [[Category:Curation]]395 bytes (55 words) - 21:11, 23 July 2013
- **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc. **Curation Status - integration with curation databases - which ones?6 KB (901 words) - 19:21, 29 November 2011
- We also hold "curation data", for example the curation status of a paper, separately * Some possible changes to WB models to improve our paper, author, person curation pipelines3 KB (487 words) - 16:36, 18 March 2021
- * Curation status and effort. * Topic Curation – how we do this.5 KB (763 words) - 00:51, 19 September 2014
- [[Category:Curation]]600 bytes (92 words) - 18:46, 17 August 2010
- * Yesterday we (FlyBase, ZFIN, and WormBase) presented paper curation status tracking * WebPhenote is currently being built for human phenotype curation5 KB (715 words) - 15:49, 4 August 2016
- [[Category:Curation]]1 KB (159 words) - 18:33, 16 August 2010
- [[Category:Curation]]736 bytes (119 words) - 18:48, 17 August 2010
- === Topic Curation === * Working out pipeline for curation6 KB (974 words) - 17:28, 3 September 2014
- ...ir label in Postgres, were never intended to be put through the first pass curation pipeline. Going forward, any papers marked as such in the paper editor, sh [[Category:Curation]]2 KB (352 words) - 18:13, 17 August 2010
- * Curation tools (Collonade, editor) === Curation ===5 KB (741 words) - 10:57, 21 August 2015
- GO curation - Issue with connecting to species objects as the taxon I'd in the file is704 bytes (104 words) - 12:27, 28 January 2014
- ...ization will be used to continually train an HMM to identify sentences for curation from new papers. Each paper listed on this page will have one of three curation status tags: Done, Not Done, Partial8 KB (1,272 words) - 21:49, 19 December 2012
- [[Category:Curation]]412 bytes (47 words) - 15:19, 15 April 2011
- === Parasite Paper Pipeline and Curation Status Tracking === ...ussed last week the options for accurately tracking data type flagging and curation status for these papers4 KB (646 words) - 17:33, 1 September 2016
- Publishing and Curation Data Curation (Dealing with Supplementary Data)2 KB (283 words) - 19:20, 11 April 2014
- * Gary Williams -- ''Curation and analysis of nematode RNASeq data'' * Chris Grove -- ''Community phenotype curation''5 KB (696 words) - 13:32, 13 July 2018
- ...nt these need to be supported (or constrained) in the persistent store and curation tool ** Do we want/need to support curation to entities from non-canonical species?2 KB (348 words) - 17:52, 2 February 2023
- ...rs to textpresso as we get them into the database each week? For new paper curation it would be good to get papers when published into Textpresso, and in an au633 bytes (113 words) - 17:29, 19 April 2011
- === Community Curation Tracker CGI === ...tomate many steps of the e-mailing process to authors requesting community curation and to track those papers for which we've sent e-mails6 KB (926 words) - 16:49, 3 December 2015
- === Adding WormBase-Parasite Paper to the Curation Pipeline (Kimberly) === ...then incorporate parasite papers into downstream SVM flagging pipeline and curation status form5 KB (689 words) - 15:35, 7 April 2016
- first-pass curation should be clearly distinguished by a person ID (textpresso ''Resolve duplicates in FP Curation checkout pages''6 KB (1,045 words) - 21:14, 24 September 2010
- **#Gene related/biological data (curation decisions, what's excluded, why, time frames,etc) **#Genomic data (data related to species, assemblies, gene model curation etc)3 KB (511 words) - 18:54, 18 February 2021
- ...captures Gene::GO associateions and additional meta data associated with a curation event ...ype_of_construct sub tags as a controlled vocabulary is now imposed in the curation tool3 KB (337 words) - 16:15, 19 February 2015
- 3e i. Data Curation Does the resource provide documentation of the data curation process/deposition workflow? Please describe, with a url link to public doc4 KB (585 words) - 21:44, 7 July 2022
- === Diseases in Curation Status Form === * Once that is finalized, Chris and Juancarlos will help get Disease into the Curation Status Form as a data type10 KB (1,664 words) - 17:02, 4 December 2013
- ...by WB would need to be re-evaluated: continue to mine but share with other curation groups? no longer mine? new WB objects or pages? *Periodically review the form and add/remove data types and curation forms as needed6 KB (921 words) - 16:52, 4 January 2018
- *Capturing curation stats from the Curation Status form *What data types do we want to capture curation stats for that we are not currently?5 KB (850 words) - 15:32, 5 September 2013
- [[Category:Curation]]1 KB (159 words) - 18:57, 10 August 2010
- === Community curation of allele-phenotype === ** 88 out of 500 have some curation by community (~18%)5 KB (776 words) - 16:50, 7 January 2016
- ...or reviews the papers daily to select those that should be included in the curation pipeline and WormBase bibliography. [[Category:Curation]]3 KB (403 words) - 16:02, 27 March 2019
- * Creating a curation interface/tool: ...dition to primary data types (e.g. if we are focused on disease annotation curation, we will need to load genes, alleles, strains, etc. in addition to the dise5 KB (670 words) - 16:00, 5 August 2021
- ...yet have a mechanism for marking genes as comprehensively annotated in our curation database, so currently we're using the following criteria for assessing ann [[Category:Curation]]2 KB (379 words) - 18:52, 16 August 2010
- * Adding tags to ?Paper and ?Person to track community curation more explicitly in WormBase Chris - will continue work on refining the tags for phenotype curation.2 KB (347 words) - 17:44, 7 November 2019
- The paper editor is accessible either from the curation index page (click on the second link, paper_editor.cgi): http://tazendra.c *If the paper being entered is used solely as evidence for curation, e.g. a concise description or topic, and does NOT otherwise contain inform7 KB (1,204 words) - 18:58, 30 June 2014
- [[Category:Curation]]1 KB (200 words) - 17:59, 6 October 2017
- Chris Stark made a file available with BioGRID worm curation that has the following columns:823 bytes (120 words) - 21:03, 13 June 2011
- 1. Moving forward with Alliance-friendly Person pages for community curation/authorship tracking<br> *AFP community curation2 KB (325 words) - 15:24, 7 October 2021
- ...the standard HGNC human gene in disease model curation and other types of curation ** Karen: literature curation WG would be interested in having a central name server, looking for ideas3 KB (529 words) - 18:26, 16 July 2020
- ** No longer needed for concise description community curation tracker ...e Cecilia could link a WBPerson as corresponding author for a paper during curation?5 KB (873 words) - 14:41, 4 February 2021
- ...ng the cohesion of the AGR group members (common infrastructure and common curation efforts). ...and controlled vocabularies that each MOD is currently using for phenotype curation4 KB (574 words) - 01:54, 2 March 2018
- [[Category:Curation]]1 KB (173 words) - 17:55, 16 August 2010
- * Need a better way to report allele details; curation of alleles can happen at Caltech or Hinxton; need to discuss * Need to minimize/eliminate redundant curation effort3 KB (427 words) - 15:32, 1 August 2019
- == Topic Curation == * GO curation - Issue with connecting to species objects as the taxon I'd in the file is4 KB (617 words) - 17:14, 23 January 2014
- === WormBase curation === * Tim Schedl: WB needs to do more curation for phenotype and variation6 KB (903 words) - 15:28, 2 April 2020
- * Curation status freezes have been collected (daily?) * We need some trial LEGO curation to start working out the process8 KB (1,234 words) - 12:36, 4 June 2014
- Curation Status/Statistics Tool *Interactive form vs. static page showing curation/flagging statisitcs5 KB (843 words) - 17:26, 1 November 2012
- 5. MAT: Curation of other nematodes genetic maps; nomenclature standardization.764 bytes (110 words) - 15:53, 2 October 2014
- === Daniela starting on gene regulation curation === * Daniela working with Xiaodong to learn the curation process4 KB (604 words) - 15:28, 5 May 2016
- Effective Textpresso searches, and subsequent curation, require the most complete lists of gene and protein names possible. In addition, some types of curation may require matching gene names only, others matching protein names only, o5 KB (857 words) - 23:28, 23 August 2011
- === Community Curation Mass Email update === === SAB Literature Curation overview ===7 KB (1,062 words) - 14:41, 2 August 2018
- * LEGO Curation/Noctua Development === LEGO curation / Noctua Development ===6 KB (801 words) - 17:29, 2 July 2014
- ** Community curation (report numbers) === Curation pipeline comparisons ===9 KB (1,336 words) - 15:32, 2 June 2016
- [[Category:Curation]]1 KB (193 words) - 18:58, 10 August 2010
- * Workshop at NLM in days following TAGC about curation at scale (Kimberly attending and chairing session) ** Phenotype community curation?5 KB (747 words) - 16:31, 5 December 2019
- # We envision a pipeline whereby BioGRID and WB can exchange interaction curation information via mapping of the database objects between the two groups. #* Going forward, WB will use/incorporate parts BioGRID curation for physical Interactions (Will alter WB data Model)3 KB (391 words) - 22:13, 22 February 2011
- ** Props out to community on Phenotype curation849 bytes (126 words) - 16:46, 16 June 2017
- ...The goal is to explore the possibility of notifying users some of the new curation since the data freeze for the WS build. === Graphical curation tool update===4 KB (695 words) - 14:44, 3 December 2020
- * currently there is no curation planned * cooperate with UniProt on curation?2 KB (329 words) - 17:10, 6 August 2015
- === Updating Curation Status Form === === LEGO curation ===5 KB (843 words) - 16:32, 4 December 2014
- * MODs have different curation policies. For example, BioGrid has predicted protein-protein interactions. * The gene description curation tool developed by Juancarlos got good feedback. Juancarlos will add more fu4 KB (694 words) - 21:33, 19 December 2019
- * Common curation database: No concrete plan for common curation infrastructure but ideas have been thrown about....is it achievable in curr2 KB (376 words) - 16:20, 10 July 2017
- * populate the postgres table and the corresponding first pass paper curation form used by fp curators ...st pass curation list as having author data, therefore marked for priority curation6 KB (1,017 words) - 19:34, 2 December 2011
- Sequence Feature curation *Enhancer curation?7 KB (1,059 words) - 15:37, 1 August 2013
- ** Chris will look at curation goals, want ambitious but realistic === Incentives for community curation ===6 KB (910 words) - 15:23, 5 October 2017
- === NAR paper community curation? === * Not much has changed about community curation fundamentally since last NAR paper6 KB (912 words) - 01:40, 15 September 2017
- [[Category:Curation]]1 KB (166 words) - 19:35, 10 August 2010
- Gene Ontology Curation at TAIR ==Specifications for Curation Pipeline==14 KB (2,091 words) - 16:28, 9 December 2010
- === Movie curation === === Unfolded Protein Response curation - Pilot topic curation ===13 KB (1,983 words) - 16:40, 7 November 2013
- ...and use Curator_confirmed evidence (the same evidence we use for WB manual curation) == Themed Curation ==8 KB (1,246 words) - 15:52, 12 November 2013
- =Author Curation=1,002 bytes (141 words) - 23:09, 30 April 2011
- === Discussions on Value of Manual Curation === === Enhancer curation ===8 KB (1,225 words) - 16:33, 3 October 2013
- ...uthor first-pass tables and paper is placed in the pipeline for first-pass curation (Juancarlos will make a filter so these papers will be prioritized for firs [[Category:Curation]]3 KB (471 words) - 19:53, 19 April 2012
- **Be prepared to report on curation status of your data type and what we might need **first-pass curation could capture the corresponding author3 KB (407 words) - 01:16, 19 February 2011
- Title: WormBase 2019 - Data, Tools and Community Curation ...base, Model Organism data at the Alliance of Genome Research and Community Curation forms9 KB (1,364 words) - 15:39, 7 February 2019
- ===Literature Curation=== ...s can query and sort the list according to reference count, gene name, and curation status.13 KB (1,830 words) - 16:40, 13 December 2012
- *How much have we curated? What is our rate of curation? *Not caught up on RNAi and allele curation by end of this term6 KB (944 words) - 16:25, 1 November 2012
- [[Category:Curation]]1 KB (183 words) - 17:49, 17 August 2010
- ...ation forms could straightforwardly capture the slices of data that needed curation, and let acedb handle how the data relates to each other. ** Caltech PostgreSQL works really well for curation and is easy to adapt and expand, but none of the data relates to each other4 KB (743 words) - 12:22, 5 March 2021
- ===Sequence feature curation=== === Sequence Feature Curation ===9 KB (1,570 words) - 16:36, 21 September 2023
- **This is the code for the curation form. ...hat lists the names of the tables used for the previous version of the CCC curation forms.5 KB (817 words) - 15:11, 18 February 2014
- [[Category:Curation]]1 KB (205 words) - 17:49, 17 August 2010
- * Discussion regarding communication/coordination of curation effort (& data display) between WormBase and ParaSite * What curation/work will ParaSite be taking over that we (WormBase) can stop doing?7 KB (1,079 words) - 19:04, 6 November 2014
- * 48 papers requested received curation (2% response rate) === Community curation volunteers ===7 KB (1,020 words) - 15:33, 7 May 2020
- ===Improving display and recognition of community curation===985 bytes (154 words) - 21:08, 6 January 2022
- * Train students to do curation on phenotype and GO. * Human genes should be referenced as HGNC ID objects in WB curation database.3 KB (410 words) - 18:23, 24 March 2020
- [[Category:Curation]]2 KB (259 words) - 23:32, 13 August 2010
- '''[[Textpresso for WormBase Curation]]''' This page will serve as a platform to coordinate the automated curation efforts of Textpresso for WormBase.17 KB (2,401 words) - 22:36, 29 November 2017
- [[Category:Curation]]1 KB (164 words) - 23:35, 14 February 2011
- **Picture curation ****SVM form (in development) vs Curation Status form (needs work/update); can generate numbers for coverage to displ7 KB (1,074 words) - 17:19, 4 October 2012
- # Should not have paper editor tag--Curation flags E-mailed_community_gene_descrip ...ipt that connects genes from abstracts to papers or from manual first pass curation13 KB (2,062 words) - 14:01, 4 August 2017
- ...class summaries are a new data type started in May 2011. The goal of this curation is to clarify what WB gene classes are, beyond a simple definition of the a ...built, these searches and sentences can be automatically uploaded into the curation form.'' <br>4 KB (704 words) - 18:19, 28 June 2011
- Curation Status Form *It is important to decouple validation from curation, so we can capture both7 KB (1,123 words) - 16:39, 6 December 2012
- === Strategies for GO-CAM (Noctua) curation === * Proposal for curation report page (Kimberly)8 KB (1,229 words) - 15:31, 1 June 2017
- ** Raymond (SObA), Chris (Community curation), Mary Ann, Wen would like to go === LEGO curation ===9 KB (1,377 words) - 16:44, 2 February 2017
- infrastructure - issues - needs - curation database - interaction with the db * curation: status and plans (Chris G):4 KB (691 words) - 17:16, 21 June 2018
- BioGRID curation coordination (Kimberly) *Still need to work out some details of curation sharing/prioritization5 KB (752 words) - 17:07, 7 July 2011
- ...type curation status tracker, including statistics. Currently used for SVM curation, could be useful for other things too. * pre-release curation of Brugia is finished5 KB (752 words) - 18:55, 6 December 2012
- == Curation of Antibodies in WormBase ==6 KB (914 words) - 15:39, 24 September 2007
- * Use for all literature curation in future? === Community Curation ===6 KB (927 words) - 14:23, 10 August 2017
- [[Category:Curation]]2 KB (220 words) - 00:19, 21 January 2011
- * We should bring data/feedback on community curation form usage ...lled "blastomere", "exprmosaic", "geneticmosaic", "laserablation" in the Curation Status form, there has been data flagged by authors for these datatypes ( h2 KB (379 words) - 16:39, 1 October 2015
- [[Category:Curation]]1 KB (196 words) - 19:48, 14 January 2013
- * Raymond, Valerio (community curation), Wen (Simple mine)787 bytes (115 words) - 04:11, 4 November 2021
- * Currently there is a ~redundant curation pipeline; considering pulling person info into lab class * 45 minutes curation talk to SAB; Chris volunteered; anyone else interested?8 KB (1,189 words) - 14:10, 5 July 2018
- [[Category:Curation]]1 KB (171 words) - 18:48, 17 August 2010
- *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi Curation status form] has lists, but not completely up-to-date. ! Number of papers flagged manually (from curation status form)5 KB (746 words) - 18:57, 10 August 2010
- Species in Phenotype curation Curation Status Form10 KB (1,553 words) - 18:04, 7 February 2013
- ** How literature info gets into WormBase? Curation process? === GO curation ===12 KB (1,809 words) - 16:33, 1 March 2018
- ...sso Cellular Component category terms and their mapping, based on previous curation, to a GO term and GO ID. ...in red. Note that the Component - GO term index is based on all previous curation data from the old form that didn't restrict how GO terms were entered. The11 KB (1,765 words) - 15:10, 18 February 2014
- === Allele-Phenotype Form / Community Curation === * We would like to encourage participation in the community curation as much as possible6 KB (982 words) - 15:33, 2 July 2015
- * Cecilia will take over laboratory curation * Sequence feature curation (literature-based, small-scale) will move to Caltech10 KB (1,586 words) - 15:30, 2 November 2017
- ** Add a number on the amount of curation we are going to do ** Phenotype community curation part added by Daniela but numbers are missing. Chris will add them.6 KB (982 words) - 16:54, 1 September 2022
- [[Category:Curation]]2 KB (281 words) - 18:56, 10 August 2010
- Slight modification to Curation Status Form *Changes documented on the [[New_2012_Curation_Status | Curation Status Form Wiki]]3 KB (436 words) - 17:59, 11 July 2013
- * Reliable cell marker gene curation for single cell transcriptome data/FACS-transcriptome datasets. A gold-stan Q3: Tradeoff of more curation versus more tools for analysis/display?11 KB (1,649 words) - 16:10, 19 July 2018
- === Phenotype Curation Requests === === Variation curation ===7 KB (989 words) - 16:08, 5 February 2020
- *For curation, we could import only the BFO and RO ID spaces of RO, but include all of th == Alliance Working Group on Literature Curation Pipelines ==11 KB (1,898 words) - 16:43, 7 June 2018
- ...s. For the purposes of semi-automating this area of GO Molecular Function curation we need a training set that is homogeneous, at least in terms of enzymatic1 KB (178 words) - 00:04, 2 February 2011
- * '''Curation''' ** How can we work with other MODs on curation strategy?8 KB (1,130 words) - 13:27, 4 February 2016
- ...uthor first-pass tables and paper is placed in the pipeline for first-pass curation (Juancarlos will make a filter so these papers will be prioritized for firs * populate the postgres table and the corresponding first pass paper curation form used by fp curators7 KB (1,133 words) - 20:36, 23 July 2013
- * Karen will review the molecule curation with other curators at the IWM * Want to push community/automated curation, with curators laying foundation of data models, forms7 KB (1,010 words) - 17:08, 4 May 2017
- ...ude interactive sessions on Overview/updates of WB and Alliance, Community curation efforts--Acknowledge system, other forms?, MicroPublication (?), JBrowse, a **Community curation--updates to AcKnowledge system, other forms? There will be a microPub booth3 KB (503 words) - 21:00, 6 January 2023
- === Pathway curation: metabolites === === Community Curation Portal ===8 KB (1,305 words) - 23:24, 3 June 2015
- Expression Cluster data curation *Trying to capture "Certain", "Uncertain", and "Partial" curation tags7 KB (1,117 words) - 16:39, 4 August 2011
- [[Category:Curation]]2 KB (263 words) - 17:49, 17 August 2010
- * Have a 'Curation News' section, link from front page. Would have the monthly increases to d1 KB (203 words) - 22:50, 11 November 2010
- === Community Curation paper === === Soliciting community curation ===10 KB (1,475 words) - 16:57, 5 November 2015
- ...iti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline ** Should probably go with daily snapshots for curation purposes (frequent updating for new/deprecated terms)5 KB (670 words) - 15:31, 3 June 2021
- * Will need to consider re-allocation of curation responsibilities * Molecule curation in maintenance mode, may require updating of mapping terms with our interna10 KB (1,527 words) - 15:32, 6 April 2017
- * Curation, organisation, display and querying of RNASeq data (FlyBase have moved ahea ...Data curators should also look at results as it should help us prioritize curation. For example: how much effort we devote to non C. elegans species.4 KB (684 words) - 19:43, 5 December 2015
- *A lot of work to get database and history maker/curation tool working *Just able to start serious curation this week (with curation tool)4 KB (617 words) - 17:01, 19 July 2012
- *Testing now with test curation *Should go live next week for official curation7 KB (1,158 words) - 17:20, 3 May 2012
- ...''Is there a way this model can be approved at the beginning of the WS244 curation so we can use the full two months to coordinate the changes? '' ** If yes, how to populate that info? Curation or automatically (via orthology)? The latter may miss some high-profile pro5 KB (796 words) - 21:05, 10 March 2014
- | non-nematode; Author-Person (pre-dated current Author-Person curation criteria) | Used in human manual GO curation (Protein2GO)4 KB (572 words) - 17:01, 13 January 2021
- #*How to enter data through the cgi and how to parse in data from RNAi curation. We also went over the dump procedures. Information can be found at http:1 KB (219 words) - 22:52, 12 January 2011
- *Lynn Schriml, The Disease Ontology: an evolving tool for Disease Curation and Annotation. *Sylvain Poux, Expert curation in UniProtKB: a case study in dealing with conflicting and erroneous data7 KB (907 words) - 19:36, 11 April 2014
- * Hinxton & WashU working on Brugia (curation of gene models, RNASeq transcripts, introns, SL1s, expression profiles, ope1 KB (182 words) - 10:02, 2 November 2012
- **At what point is this entered into Column 2 of the curation form?1 KB (215 words) - 19:04, 11 June 2013
- ...plementation using the CCC categories, submit the resulting sentences to a curation form, make annotations, and download the annotations in either a simple thr ...Textpresso using their chosen criteria and export the sentences to the CCC curation form.17 KB (2,749 words) - 20:04, 21 January 2011
- ...r data! End with community curation-New Author First pass form, community curation forms--Daniela **Screen cleaning cloths with community curation theme on them, he will send around the picture4 KB (564 words) - 15:22, 4 April 2019
- ** most curation involves extracting people information from papers (~800 week), as automate ===Sequence feature curation===10 KB (1,453 words) - 18:52, 4 February 2015
- #Is community curation working?1 KB (216 words) - 11:16, 19 January 2018
- === New curation topic for WS249 === * The "Curation Status Omit" toggle button on TAB 3 was intended to flag nonprimary papers,7 KB (1,058 words) - 15:32, 2 April 2015
- ...Class named 'Molecule' was added to the database. After several rounds of curation these molecules can be divided into two categories: (A.) chemical compounds1 KB (209 words) - 19:57, 25 July 2012
- ...om BG. WB will come up with examples for each interaction type from their curation.1 KB (240 words) - 22:36, 22 February 2011
- ...look at it manually. Other molecular details come directly through manual curation of publications...prioritizing microPubs. *Need to come up with a curation tool for molecular changes, need a good workflow to make it efficient3 KB (523 words) - 11:20, 3 April 2020
- [[Category:Curation]]2 KB (280 words) - 17:34, 16 August 2010
- * [https://github.com/WormBase/website/issues/6186 paper curation form] - CalTech1 KB (213 words) - 16:56, 15 February 2018
- #Community Curation (Mary Ann Tuli, Chris Grove) * Community curation (Mary Ann and Chris)3 KB (466 words) - 09:34, 3 March 2017
- *working on phenotype curation *Picture curation?9 KB (1,302 words) - 16:38, 2 June 2011
- [[Category:Curation]]2 KB (284 words) - 22:43, 16 August 2010
- [[Category:Curation]]1 KB (240 words) - 04:28, 8 September 2010
- === LEGO curation call === === Modeling and curation future in Datomic ===7 KB (1,073 words) - 16:26, 2 March 2017
- ...entation on [https://github.com/WormBase/wormbase-curation GitHub WormBase curation repository] *Karen will work out a procedure for "Gitifying" her curation pipelines and will share what worked with other curators4 KB (651 words) - 16:11, 2 May 2013
- * Big data curation open discussion/workshop * EcoCyc, MetaCyc - pathway curation (will hear from Karen)10 KB (1,474 words) - 15:54, 30 April 2014
- Starting with WS194 manual curation of C.remanei gene models will begin. and manually curation.8 KB (944 words) - 16:52, 21 December 2011
- == Curation and Supervision ==6 KB (977 words) - 19:43, 14 June 2011
- [[Category:Curation]]2 KB (248 words) - 22:57, 13 August 2010
- ** needs potential additional curation together with the CGC (~4000 WBPeople who paid for strains from the CGC) -1 KB (207 words) - 09:45, 22 January 2016
- ...tion efficiency, provide distinct curation milestones, and create a common curation goal for curators, we would like to classify the C. elegans corpus into bio # How we go about choosing a category as a curation priority10 KB (1,279 words) - 18:20, 18 October 2013
- ...Postgres. There will be a requirement to write code to send data from the curation side to Postgres.2 KB (267 words) - 17:43, 16 November 2023
- [[Category:Curation]]1 KB (149 words) - 19:20, 10 August 2010
- [[Category:Curation]]2 KB (240 words) - 17:41, 16 August 2010
- * ZFIN has protein curation that may be becoming a bit out of date === Strain curation with disease ===9 KB (1,490 words) - 15:35, 6 October 2016
- * Is it possible that Hinxton gives Caltech a tutorial on what kind of curation and resources that WormBase has for non-coding RNA? It will be very helpful * Same room: Technical direction for the alliance Also curation priorities. Rebalancing what to prioritise, to produce a revised plan.3 KB (561 words) - 18:39, 6 February 2020
- *Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for2 KB (243 words) - 16:07, 4 April 2024
- *** curation / teams2 KB (239 words) - 15:42, 17 June 2016
- ...and references of every tracks in the genome browser for users as well as curation processes.2 KB (265 words) - 21:19, 21 January 2021
- ...y geneace dump (e.g. some tm variation-gene associations are not in the OA curation tool) ...iti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline4 KB (576 words) - 16:28, 17 June 2021
- [[Category:Curation]]2 KB (247 words) - 19:37, 19 November 2010
- [[Category:Curation]]2 KB (241 words) - 17:46, 17 August 2010
- * Topic: curation styles * Curation by paper, by topic, etc.8 KB (1,289 words) - 18:11, 10 November 2016
- === Automation of curation === ...ty annotations is (for this paper) about 3-fold more efficient than manual curation; we probably have higher gains for papers with more annotations6 KB (910 words) - 16:43, 7 March 2019
- - elegans - gene set + new RNASeq-based intron curation features1 KB (213 words) - 16:30, 21 July 2011
- **Curation efforts? No *People should check their own curation data8 KB (1,282 words) - 17:08, 7 July 2011
- * Curation of protein complexes - will wait until Chris can join in. * Topic Curation10 KB (1,583 words) - 18:16, 5 February 2014
- RNAi Curation Standard Operating Procedure (SOP) **Expression patterns (image curation and 3D graphics)6 KB (971 words) - 16:24, 6 October 2011
- === Author first pass incorporation of community curation requests === * We could co-opt the AFP pipeline to request community curation, specifically concise descriptions and allele-phenotype6 KB (906 words) - 21:38, 30 September 2015
- * Alliance curation status form development needs use cases. ref https://wiki.wormbase.org/inde ...earches and Validation in the ABC (or, what are your common actions in the curation status form)? ====9 KB (1,375 words) - 16:04, 18 April 2024
- ...n ids to transgenes to better coordinate these objects among multiple data curation pipelines, their current names will be moved to the Public_name tag.2 KB (294 words) - 16:14, 16 August 2012
- === New AFP datatype for curation status form (CSF)? === * Can wait a bit before adding to CSF; if there will be dedicated curation for that data type we may add later7 KB (1,044 words) - 14:45, 8 October 2020
- ...impressed with triaging and organization of paper curation prioritization, curation is paper-by-paper, author response form is minimal - no specific author com ...pathway annotation - looking at PAINT annotations to create templates for curation of the signaling pathway in NOCTUA and look for ontology and other issues t5 KB (831 words) - 16:49, 1 December 2016
- * Deployed new curation database (the database currently known as "Genetomic") on fresh AWS instanc === Curation / Data ingration ===11 KB (1,714 words) - 11:04, 27 July 2015
- * Topics could be curation pipelines, data display, tools, etc.1 KB (234 words) - 16:02, 5 May 2016
- [[Category:Curation]]2 KB (272 words) - 18:58, 10 August 2010
- *When the curation form is made live, Userid for sending annotations to Protein2GO needs to be *Examples for color coding and underlining in curation form:11 KB (1,666 words) - 17:53, 19 June 2014
- ...to encourage our users to contribute in non-financial ways (e.g. community curation)2 KB (250 words) - 16:12, 19 October 2017
- * To be started early next week - delays due to curation work between builds2 KB (283 words) - 15:52, 3 August 2023
- [[Category:Curation]]2 KB (279 words) - 18:55, 16 August 2010
- Community curation-Author first pass and other data submission forms Kimberly2 KB (280 words) - 17:48, 1 April 2019
- * Curation for parasitic species? ...is composed of two completely separate genes, according to our normal gene curation standards.8 KB (1,391 words) - 11:57, 6 August 2014
- *It will be up to Caltech to integrate the annotations into their curation database and perform any necessary editing and QC there. ...ed into the postgres database at Caltech so they will be visible in the OA curation tool for review and editing.7 KB (1,164 words) - 17:54, 19 February 2015
- * MA is writing a Gazette article about community curation. Will mention the comment system.2 KB (240 words) - 08:42, 3 July 2015
- ** Community curation swag2 KB (247 words) - 17:22, 4 May 2023
- === Alliance curation === * Maybe could discuss curation plan8 KB (1,262 words) - 15:34, 3 May 2018
- === Alliance literature curation === * Will work out general common pipelines for literature curation6 KB (897 words) - 14:27, 3 October 2019
- what about other curation data? <br> Juancarlos - curation data will continue to go to postgres. paper, person, and laboratory are ea4 KB (709 words) - 13:27, 5 April 2021
- *** Transgene IDs - The data retrieval and processing broken : Caltech-side Curation write-up [https://wiki.wormbase.org/index.php/Transgenes#CGC_Transgenes_fro2 KB (279 words) - 17:17, 3 March 2022
- *We would want an automated curation mechanism in place for non-core species *Curation efforts may be better for college students (work study)6 KB (983 words) - 18:02, 12 July 2012
- * We will need to learn to model in Datomic to start building curation tools that run off of Datomic * For long term, we will want to build a curation tool directly on top of Datomic; will need to model currently un-dumped fie4 KB (571 words) - 16:48, 3 March 2016
- * Topic curation for WS243 & WS244: Repsonse to Pathogens, Signaling in Innate Immunity * Chris : topic curation. Response to Pathogens, Signalling in Innate Immunity4 KB (629 words) - 16:57, 6 February 2014
- ...ge 'Author_first_pass' -> 'ACKnowledge' (part of new funding for community curation project)2 KB (261 words) - 00:39, 3 June 2022
- * Workshop about what we can do now to promote community curation, not new developments. * Karen is already talking with zfin people about curation comparisons, we will see about expanding these to include other MODs.5 KB (732 words) - 14:46, 29 April 2016
- *Raymond introduced Fernand to the team. He is focusing on anatomy function curation.2 KB (315 words) - 21:06, 3 July 2020
- [[Category:Curation]]2 KB (301 words) - 18:05, 16 August 2010
- *Making this change would force a post-curation mechanism that ties these entities together for intuitive data display Coordinating physical interaction curation with BioGRID4 KB (695 words) - 15:26, 7 June 2012
- * New ?Construct model will be vetted and approved for early in the WS244 curation cycle ...structs used in in vitro physical interaction experiments; this is pending curation of (sufficient amounts of) the relevant data8 KB (1,218 words) - 17:46, 2 April 2014
- **A curation tag could be added to the data model (RNAi experiment) to capture whether o Wen starts RNAi curation around mid-September4 KB (650 words) - 17:08, 1 September 2011
- * Mary Ann would like to develop a prototype curation form (for variations/molecular lesions) for the international meeting === Physical Interaction Curation ===8 KB (1,120 words) - 16:19, 5 March 2015
- ...). We also need to flag these papers for author_person curation under the curation flags. Also, the identifiers are created according to the information in t5 KB (761 words) - 21:04, 10 February 2012
- [[Category:Curation]]2 KB (307 words) - 14:04, 7 February 2013
- ...estion for Gary Williams - Do we still need an RNA-seq flag on the AFP and curation status forms?2 KB (263 words) - 15:49, 4 April 2019
- ***If data type is curated in postgres, then curation of an SVM positive would indicate curator positive (i.e., true positive) ***If data type is curated in postgres, then curation of an SVM negative would indicate curator positive (i.e., false negative)5 KB (843 words) - 17:17, 12 October 2012
- ** Gary had made cartoon for community curation (proposal might be offensive to some) ** GO CAM curation, once there are defined best practices for editing with Noctua11 KB (1,676 words) - 15:28, 2 May 2019
- ...or meeting the hard-code constraints we requested. For variation-phenotype curation, these constraints require that each entry contain a curator, an object typ [[Category:Phenotype Curation]]5 KB (782 words) - 20:35, 24 September 2010
- ...opposed to how we should all be doing things *together*. Hope for unified curation tools, but that is really hard.2 KB (306 words) - 16:32, 3 November 2016
- ...mental model’ annotations not be submitted to the Alliance at all. In our curation database at Caltech, the new style ‘Disease_model_annotation’ and the o2 KB (318 words) - 17:43, 26 October 2023
- *Kimberly will give 2 talks (CCC and molecular function automated curation) ...nth cycle for upload (in sync with WormBase) is too long of a cycle for GO curation7 KB (1,070 words) - 17:47, 1 March 2012
- **Paper and curation pipeline ***New concise description curation interface for easier writing and updating12 KB (1,878 words) - 15:55, 6 September 2012
- [[Category:Curation]]2 KB (329 words) - 15:21, 7 August 2014
- Expression pattern curation *Consistency of curation?4 KB (612 words) - 17:13, 1 December 2011
- *Transgene curation (and others?) may need adjustment to what goes in the "Summary" and "Remark *Curation will produce association files (connecting terms to genes)9 KB (1,339 words) - 19:02, 31 January 2013
- *** Answering this kind of question requires us to have "complete" curation on certain data types. Are we going to keep this goal with the move into AG ...sue of overall annotation coverage in WormBase and how we could prioritize curation better to fill in knowledge gaps.5 KB (821 words) - 22:36, 20 February 2020
- == Antibody curation SOPs == ...match method (although SVM also flag antibody, I don't use this method for curation purpose).21 KB (2,888 words) - 19:58, 9 April 2021
- #From the curation form index at http://tazendra.caltech.edu/~azurebrd/cgi-bin/index.cgi, clic2 KB (381 words) - 16:53, 2 November 2010
- *mention SVM and textpresso helps curation Chris - review of community outreach for phenotype curation and gene concise description7 KB (1,249 words) - 17:23, 7 January 2016
- [[Category:Curation]]2 KB (340 words) - 08:50, 24 September 2010
- [[Category:Curation]]2 KB (390 words) - 08:28, 13 June 2012
- *Murky genetic interaction curation? *Chris is working on decision tree/pipeline for curation7 KB (1,103 words) - 18:28, 5 May 2011
- *Focus on plans and priorities--curation priorities2 KB (305 words) - 17:05, 19 April 2018
- * Use GO curation, PAINT/PANTHER tool to assign name? * Want to enable curation to isoforms when info is available6 KB (903 words) - 16:37, 5 January 2012
- * Karen raised the possibility of manual curation being required. This would require further model changes and would be a lar2 KB (324 words) - 17:41, 2 June 2016
- * Topic Curation ...'t if there is a need. We will simply need to make sure you know the right curation format, which for non-nematode strains is a bit vague. I am talking to Aric10 KB (1,485 words) - 18:08, 5 March 2014
- 6) Check to see if any controlled vocabularies in your curation tool need to be updated.<br> For example, in the case of Caltech's OA, non-2 KB (379 words) - 22:06, 10 October 2013
- ...ion-to-?Gene connections can be attributed to a WBPerson (e.g. from Allele curation form) in a Phenotype GAF2 KB (344 words) - 16:30, 3 April 2014
- ...jana finished populating the Genotype OA with genotypes needed for disease curation * Had someone on phenotype curation tutorial specifically asking about it (Kimberly responded)5 KB (701 words) - 15:38, 4 June 2020
- ==Specifications for Curation Pipeline== ...hese papers (i.e., sentences) filtered from the sentence files used on the curation form. I have the list of papers. --K.'''24 KB (3,814 words) - 18:31, 8 August 2011
- * Should we ask about a Community Curation workshop in order to exchange ideas with other MODs ...nizers (Pascale Gaudet?) if there can be a workshop dedicated to community curation at the Biocurator conference in Geneva in 2016.6 KB (850 words) - 01:12, 22 August 2015
- ...rate folder in GO (follow-up with CM on this), prioritize genes for manual curation, any combination of the above or other ideas? ...to their 'phenotype' information content and might help prioritize future curation5 KB (825 words) - 21:25, 24 June 2013
- [[First-pass to Curation]]<br> ...are counted as flagged. So for the paper to be considered flagged for the curation status form, the first-pass data curator must merge the data from the autho15 KB (2,589 words) - 16:42, 11 January 2018
- ...lan to eventually connect strains to genotypes, but need model changes and curation effort to sort out * Chris gave presentation to Lina Dahlberg's class about community phenotype curation8 KB (1,228 words) - 20:57, 14 July 2020
- This link leads you to the "Submit Data" page. On this page, the "Community Curation" widget has a link to the Phenotype form via the "Fill out online form" but ...eporting phenotype data, but no curation has begun. Clicking on the "Needs curation" link will direct you to back to the Phenotype form with your name, e-mail26 KB (4,016 words) - 21:32, 8 April 2020
- ...the GPAD) from UniProt to avoid entering redundant annotations from manual curation. *****Final output is a GAF stripped of duplicate entries wrt manual curation6 KB (1,087 words) - 19:52, 27 July 2015
- * Karen asks: How will LEGO integrate with Process&Pathway curation at WormBase? ** Q&A about literature curation8 KB (1,147 words) - 15:33, 7 May 2015
- * Send Michael Paulini release notes stuff (e.g. Topic Curation) '''before/during weekend'''2 KB (312 words) - 16:36, 24 February 2014
- Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette15 KB (2,658 words) - 19:16, 11 April 2014
- [[Category:Curation]]3 KB (446 words) - 16:01, 1 July 2014
- WormBase is constantly being changed and expanded, both by curation of newly available data and by modifications to the user interface. The ent2 KB (365 words) - 00:06, 1 December 2010
- [[Category:Curation]]2 KB (264 words) - 17:32, 16 August 2010
- ...this paper has been curated by WormBase curators). Clicking on the "Needs curation" link will direct you to back to the Allele-Phenotype form with your name, ...O DUMP" and "Needs Review" toggles will be turned ON by default. Community curation submissions through this form can be queried by querying for the "Community15 KB (2,325 words) - 23:32, 21 December 2015
- *Perhaps add "what is expected" info during curation? *Good to have a comparison of curation with core set of common papers7 KB (1,047 words) - 15:34, 4 April 2013
- * Does Hinxton use the curation status form? only Gary W2 KB (379 words) - 17:22, 7 January 2021
- [[Category:Curation]]3 KB (408 words) - 23:34, 13 August 2010
- 2. Establish a development environment for Dockerizing services (curation OA, other web forms, postgres DB)2 KB (314 words) - 19:19, 14 December 2021
- * Gary Williams only using high quality data, taking care of all curation (including meta data) === Construct/Transgene curation ===10 KB (1,464 words) - 17:09, 13 August 2015
- ...ket is resolved, but attaching evidence to manual annotation from external curation groups is still under discussion] - '''NOT HELPDESK'''6 KB (909 words) - 21:56, 21 November 2013
- [[Category:Curation]]3 KB (444 words) - 23:42, 13 August 2010
- ...of Phenotype2GO-based annotations would be uploaded to the new Protein2GO curation tool.3 KB (495 words) - 15:15, 24 August 2012
- * Investigating automation for some curation processes * Create a strain OA? Central curation tool for strain data?14 KB (2,226 words) - 15:31, 7 June 2018
- ...vailable for curators to request IDs so they can immediately continue with curation. ** Phenotype curation; try to enter into the OA, doesn't come up; may look in WormBase, if not th5 KB (857 words) - 14:36, 9 March 2020
- ...included in the AFP tools and micropublication (as well as general variant curation from the literature)2 KB (354 words) - 16:05, 16 September 2021
- ...ecifications for the next version of the Textpresso for Cellular Component Curation (CCC) tool. ...ted by curators and are also part of the broader plan for Textpresso-based curation pipelines and the GO's Common Annotation Framework.30 KB (4,868 words) - 14:50, 11 June 2013
- -Need to change this to take all clones. Construct curation will require annotating using cDNAs, Fosmids, Cosmids, etc. !Use - OA data type curation8 KB (1,375 words) - 05:12, 21 April 2020
- ...this model; curators feel that the detail is not the rate limiting step of curation * Will also discuss AGR, community curation, micropublications, data mining tools8 KB (1,213 words) - 15:29, 6 July 2017
- ==Tab 4 – Genotype/ Genetic Interaction/ NBP Data Curation Fields== [[Category:Phenote curation tool]]12 KB (1,991 words) - 23:45, 14 February 2011
- ...iti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline * Chris: Community curation, highlight prolific contributors, awards ?5 KB (794 words) - 16:30, 3 June 2021
- ** We don't yet know the turn-around timeline for BioGRID curation of worm datasets; WB may be able to curate them much sooner * Chris and Jae will work with Rose et al. to coordinate HTP curation6 KB (861 words) - 19:23, 5 November 2020
- ...documents the creation of the construct class and all tools needed for its curation. * reorganize the transgene OA to include construct curation10 KB (1,537 words) - 17:05, 28 May 2021
- ...text (when needed); would need to work out the logistics/mechanics of such curation ** Transgene-phenotype curation currently specifies causative gene, but would be more complicated for strai12 KB (1,930 words) - 17:12, 1 February 2018
- Propose to submit paper on Community Curation === FlyBase Human Disease curation ===8 KB (1,220 words) - 16:26, 3 September 2015
- *Initially thought it would be textual data that would go into disease model curation, but really involves other data types such as Variation, Strain, Phenotype,3 KB (400 words) - 16:03, 15 March 2018
- -- actually curation history; unclear what it is.3 KB (423 words) - 18:20, 14 February 2011
- Curated_by UNIQUE Text //To identify whether the curation was done by Hixton or Caltech. Not useful any more since all data are now c4 KB (497 words) - 22:42, 6 December 2010
- * Shall we add in the Curation status form Datatypes that are not currently in it (e.g. Time and site of a ...e cfp form? If we can keep the data tables and still see the flags in the curation status form, do we need the cfp form? http://tazendra.caltech.edu/~postgres6 KB (906 words) - 15:34, 6 December 2018
- [[Category:Curation]]3 KB (415 words) - 21:29, 23 July 2013
- [[Category:Curation]]3 KB (521 words) - 18:57, 10 August 2010
- * Community curation (allele-phenotype, concise descriptions, etc.)2 KB (371 words) - 18:38, 17 December 2015
- List of genes that are new in the nameserver are not accessible by caltech curation anymore.2 KB (414 words) - 16:14, 18 May 2023
- ...some paper types from the searches would more accurately reflect the real curation pipeline. [[Category:Curation]]7 KB (1,103 words) - 18:08, 16 August 2010
- * Caltech has been filling in Google spreadsheet with curation numbers2 KB (384 words) - 20:25, 21 May 2015
- postgres queries can be entered [https://caltech-curation.textpressolab.com/priv/cgi-bin/referenceform.cgi here] The number of genes represented in by all phenotype curation10 KB (1,650 words) - 18:12, 29 January 2024
- ** Expression pattern curation needs genetic sex; needs a model at the Alliance for capturing sex * Kimberly has occasionally uploaded a species.ace file in the context of GO curation; but Hinxton otherwise handles it; should ask them5 KB (880 words) - 15:40, 3 September 2020
- *** We will need a plan for tracking changes and updating our curation data as needed3 KB (440 words) - 08:42, 3 September 2020
- * We should consider moving curation database to a new machine/location and/or creating a backup system * Currently, curation is performed manually11 KB (1,664 words) - 16:29, 7 December 2017
- [[Category:Curation]]7 KB (659 words) - 17:39, 17 August 2010
- ...2) and Other_animal (37) to remarks. Those tags are not currently used for curation. * For Person curation it would be good to be able to faithfully store and display appropriate for11 KB (1,782 words) - 17:55, 13 May 2021
- == RNAi Curation Mission Summary == ...of the dsRNA is clearly stated by the authors. In many cases, however, the curation task is not so simple: there may be complex genotypes with multiple mutatio29 KB (4,152 words) - 20:29, 30 July 2019
- //?WBProcess Model - renamed Biological topics for website and curation4 KB (503 words) - 00:51, 7 November 2013
- ** Corrections made in our Caltech postgres curation database now - how quickly can we get them to the Alliance?3 KB (492 words) - 18:48, 17 March 2021
- [[Category:Curation]]3 KB (582 words) - 23:08, 13 August 2010
- * Skeptical that community curation will take off (or that it will get all curation done) === Person curation ===11 KB (1,703 words) - 15:27, 5 April 2018
- ...gh non-git e-mails (now pasted into git). Requires further discussion with curation group-ky'' n765 is lin-15AB - Karen **Caltech is discussing a new, more process-focused approach to literature curation6 KB (1,069 words) - 20:52, 23 July 2013
- === Phenotype curation interface call yesterday ===8 KB (1,224 words) - 15:34, 21 July 2016
- ...r 2006 would get the new predictions into BrigAce and available for manual curation before St. Louis SAB meeting - ''Michael Han''3 KB (454 words) - 18:54, 11 August 2010
- To unify the GO curation process, would it be possible to have a module or panel where the weekly Te [[Category:Phenote curation tool]]7 KB (1,075 words) - 21:05, 24 September 2010
- * Wen : Design game for community curation, exchange points for something. ...na has a small model change to get asserted human genes in at the point of curation. Mark and Stavros have looked it over. Stavros has said there's time to g7 KB (1,113 words) - 18:19, 6 April 2023
- ...een flagged and curated. These papers can be used as a source for verified curation flag examples.'' | align="center" style="background:#f0f0f0;"|'''Old fp curation form name'''17 KB (2,417 words) - 11:04, 21 December 2011
- ...een flagged and curated. These papers can be used as a source for verified curation flag examples.'' [[Category:Curation]]16 KB (2,310 words) - 11:05, 21 December 2011
- *Pilot: Take subdomains, pathways, try extended version of curation on these *WormBase Process curation could really benefit from GO's adoption of this strategy7 KB (1,019 words) - 20:58, 12 April 2012
- ...C. elegans host-pathogen studies for which we're otherwise not doing much curation.3 KB (490 words) - 17:22, 18 June 2020
- ...into the OA since that would slow the drop-downs, but when we need one for curation, what needs to be done?3 KB (542 words) - 16:49, 1 July 2021
- ...te the fact that the regular addition of new cDNAs to GenBank/EMBL and the curation process of matching gene structure to available cDNA information changes th ...crease in the number of confirmed genes is a good indicator of the ongoing curation work. Of the ~5,000 predicted genes that remain, several will probably neve10 KB (1,509 words) - 15:40, 24 September 2007
- ...een flagged and curated. These papers can be used as a source for verified curation flag examples.'' [[Category:Curation]]13 KB (1,960 words) - 11:07, 21 December 2011
- | Data is in Caltech's curation database. kmva 2014-11-05 | Data is in Caltech's curation database. kmva 2014-11-0535 KB (4,174 words) - 10:52, 2 February 2015
- * Discussing curation of NOTs; when a disease model might be expected, capture when it doesn't tu3 KB (501 words) - 17:29, 1 September 2016
- **Community curation-new author first pass form, phenotype submission3 KB (552 words) - 17:23, 3 January 2019
- Image curation Genetic Interaction Curation7 KB (1,064 words) - 19:12, 3 November 2011
- '''Data types for which curation is stored in postgres:''' ...we then make the association based upon the fact that there is interaction curation for that gene using the paper as evidence? This whole idea still needs som12 KB (1,973 words) - 20:53, 16 June 2011
- ...k there is no harm in leaving Person_evidence there. It adds weight to our curation.] *Human Disease curation also uses this -- Juancarlos15 KB (2,374 words) - 16:00, 17 July 2014
- * Mary Ann and Sibyl have setup the community curation portal page on staging: http://staging.wormbase.org/about/userguide/submit_3 KB (539 words) - 10:56, 5 June 2015
- ...from acedb and showing this information in the term info box helps during curation as it verifies the identity of the object being curated and saves the curat [[Category:Phenotype Curation]]10 KB (1,644 words) - 18:48, 13 August 2020
- **Downstream curation, i.e. author-person connections?4 KB (641 words) - 15:23, 19 June 2012
- [[Category:Curation]]4 KB (585 words) - 18:33, 16 August 2010
- |'''OA form<br>wiki page<br>model[[WormBase_Models| (all models)]]'''||'''Curation focus'''||'''Postgres Tables'''<br>([[all OA tables | oa tables]])||'''Dump ...opic_Curation_OA| Topic wiki]]<br>[[WS225_Models.wrm| WS225 model]]||Topic curation||pro_<br>[[All_OA_tables#pro_tables_Topic|pro_tables]]||/home/acedb/karen/p20 KB (3,050 words) - 21:01, 19 April 2017
- === Example for sequence feature curation === ...ture has also been made at this location to aid expression and interaction curation24 KB (3,538 words) - 17:50, 15 December 2015
- //Qualifer hash will be used for Expr_pattern curation to specify the reliability of data. ...Life_stage, etc., then hold a mix of Descriptors from Expr_pattern and GO curation (all ontologies)?16 KB (1,695 words) - 08:29, 12 May 2014
- ...capture Gene::GO associateions and additional meta data associated with a curation event.5 KB (663 words) - 16:47, 5 December 2014
- [[Category:Curation]]5 KB (646 words) - 17:11, 25 November 2020
- ==Manual Literature Curation== ...i.wormbase.org/index.php/Noctua_model_curation_tracking_table Noctua model curation tracking table]30 KB (3,904 words) - 18:45, 13 May 2020
- ...ing the dumping script, but would like to start recording this data during curation for storing in Postgres. Will be dumping in the very near future. <br>4 KB (759 words) - 23:35, 26 February 2017
- ...apers emailed about, 35 emails bounced, and have received some flagging or curation on 63 (63/1105 = ~6% response rate), in first week ** Phenotype community curation8 KB (1,121 words) - 14:01, 15 July 2019
- ===Topic Curation OA (pro_tables)=== ...we said, you'll be doing curation to pictures from here instead of picture curation adding processes ? -- J Yes --K20 KB (3,088 words) - 19:17, 13 August 2020
- Curation Statistics *Topics: entity recognition, curation pipelines8 KB (1,161 words) - 16:34, 7 March 2013
- * Sample papers curation ...different data types (e.g. promoter and gene regulation) to identify best curation practices.23 KB (3,248 words) - 12:58, 22 September 2014
- ...ool developed by WormBase for a variety of curation purposes including the curation of phenotypes, attaching GO terms to genes, genetic interactions, transgene ...a GO term, have the ontology (P, F, or C) get entered automatically. (From Curation Interface Meeting)20 KB (3,124 words) - 19:59, 19 February 2020
- ...associations to diseases (DO terms) would then be made during the Postgres curation database dump.5 KB (705 words) - 16:31, 16 June 2020
- [[Category:Curation]]5 KB (837 words) - 17:43, 16 August 2010
- [[Category:Phenotype Curation]]5 KB (749 words) - 19:47, 17 May 2018
- ==Curation== ===Curation tools===29 KB (4,575 words) - 16:23, 3 March 2022
- Could you please tell me if in your curation you use Life_stage objects?4 KB (599 words) - 00:25, 4 May 2012
- * Use same e-mail account Chris is using for phenotype community curation requests or create a new account for AFP (gmail) ** Web interface and curation tool9 KB (1,366 words) - 15:19, 6 September 2018
- [[Category:Curation]]5 KB (723 words) - 09:02, 22 May 2012
- ...abor-intensive procedure, which has become a major bottle neck of database curation. BioCreative IV GO annotation task aims to evaluate the performance of syst Expert curation in UniProtKB: a case study in dealing with conflicting and erroneous data25 KB (3,541 words) - 19:14, 11 April 2014
- [[Category:Curation]]10 KB (928 words) - 18:34, 2 May 2011
- *Manual curation associated with gene identifiers4 KB (609 words) - 20:57, 3 November 2011
- *People need to be willing to pay for the QC/curation; depends on database priorities ...She would like to integrate the CGC strain information into the transgene curation pipeline. This could potentially lead to some redundancy, but the consensu13 KB (2,097 words) - 22:48, 7 April 2011
- ...osition, location, research interests, how often site used), asks what our curation priorities should be. Curators from each data type should look at "their" s * Community curation will be added to raise awareness.9 KB (1,431 words) - 23:32, 23 June 2015
- *Gene list curation from high-throughput studies, confusing usage of public names probably less * Fernando has made curation progress on neural control of dauer development (couple papers)9 KB (1,369 words) - 22:47, 5 August 2020
- ...isease. We have made orthologs of human disease genes, a priority list for curation. In the past, information about the relevance to human disease was to a lar5 KB (782 words) - 20:56, 8 January 2020
- ** Requested Caltech curators to test on the [https://caltech-curation-dev.textpressolab.com/priv/cgi-bin/oa/ontology_annotator.cgi dev OA] ** Show Caltech curators a comparison between afp data in the Caltech curation status form vs the ABC. Implications for display and statistics.36 KB (4,994 words) - 17:27, 14 February 2024
- * Raymond: implications in phenotype curation4 KB (624 words) - 17:15, 4 April 2013
- ...ed to connect those WB Persons to be able to populate data in the Alliance curation db ? * For author curation/verification, what evidence do we want to use?10 KB (1,547 words) - 21:31, 2 January 2024
- ...ck here to review your publications and see which are in need of phenotype curation -this field not necessary in the micropublication form5 KB (800 words) - 18:29, 16 August 2017
- ==Movie Curation==5 KB (814 words) - 18:48, 17 September 2018
- ** Link to demo version: http://curation.pombase.org/demo ...mental or online data storage is becoming the norm, our need for it during curation will be increased4 KB (622 words) - 16:47, 6 August 2014
- ...on Ontology] is used in WormBase to record evidence used for assertions in curation data models.6 KB (834 words) - 17:56, 15 June 2020
- ** Figure out what type of curation we want to do, prioritize, and put down numbers on how long is going to tak5 KB (787 words) - 18:10, 25 August 2022
- active curation of innate immunity interactions/allergy data grows massively - need standards, data integration, good curation fed into - automated funciton prediction29 KB (4,082 words) - 19:15, 11 April 2014
- ...on the paper editor (by clicking on the "RNAi Curation" button). The RNAi curation table on the paper editor keeps track of papers that have been curated for ...ifiers were discontinued after WormBase took over responsibility for paper curation.25 KB (3,238 words) - 16:42, 8 November 2019
- A large curation effort was done on the C.brenneri gene predictions, reducing the6 KB (692 words) - 16:51, 21 December 2011
- Being used in sequence curation and automated transcript building. Being used in sequence curation and automated transcript building.17 KB (2,478 words) - 14:07, 5 July 2012
- The C. brenneri gene set has been significantly improved through a manual curation effort.6 KB (722 words) - 16:43, 21 December 2011
- [[Category:Curation]]5 KB (816 words) - 20:11, 7 September 2011
- =Interaction Curation= ===semi-automatic curation with textpresso extracted sentences===50 KB (5,228 words) - 15:10, 21 July 2017
- ** Community curation5 KB (759 words) - 15:02, 11 September 2019
- = Three Methods of Curation: Web CGI, Batch Form & RNAi OA = There are two basic methods of RNAi curation: (1) a web-based CGI form and (2) a batch form involving a Perl script (liv47 KB (7,989 words) - 23:40, 1 September 2015
- '''postgres tables for the Variation/Strain/Transgene/Rearrangement Phenotype Curation<br> dumper on tazendra at /home/acedb/work/allele_phenotype/use_package.pl | style="color: grey;"| pgonly||app_curation_status||dropdown||Curation Status||1||||||||NO DUMP field37 KB (5,333 words) - 19:07, 27 June 2019
- ...h Mary Ann about having this info sent to her behind the scenes for strain curation7 KB (934 words) - 19:56, 27 September 2016
- Curation of Caenorhabditis gene nomenclature and of the C. elegans7 KB (762 words) - 10:53, 21 December 2011
- * Include other papers in need of curation at bottom of email; possibly, would it turn off users?5 KB (818 words) - 15:55, 1 November 2018
- Updates on [https://github.com/kyook/wb-projects/wiki/NBP-allele-curation kyook_github_wiki] [[Category:Phenotype Curation]]6 KB (920 words) - 00:20, 14 October 2015
- * new Pristionchus gene curation:7 KB (818 words) - 11:10, 21 December 2011
- | Caltech curates phenotypes of rearrangements. Sequence and object curation occurs at Hinxton. Changes to the model needed to be approved by Hinxton cu | Standardizing the curation of DNA plasmids used for generating variations and transgenes, and used for16 KB (2,207 words) - 23:06, 9 January 2014
- [[Category:Curation]]7 KB (1,133 words) - 17:52, 16 August 2010
- Curation Status & Statistics Form (2012) Above is a screenshot of the main page of the Curation Status Form. The user/curator is requested to identify who they wish to log144 KB (18,174 words) - 19:56, 21 January 2021
- [[Category:Curation]]11 KB (1,578 words) - 13:38, 10 April 2012
- ...do the recomputes, but in the interim we do a lightweight build to update curation data from Caltech5 KB (890 words) - 18:36, 5 November 2020
- ==Interaction Curation== ...Throughput UNIQUE High_throughput // See BioGRID curation criteria for discussion53 KB (6,521 words) - 20:51, 7 March 2019
- [[Category:Phenotype Curation]]6 KB (1,053 words) - 20:38, 24 September 2010
- ...ame. Necessary for resolving duplications/ambiguities resulting from cross curation with expression pattern and gene regulation.13 KB (1,341 words) - 20:12, 22 September 2015
- ...d to build predictive models of normal and abnormal pathways. The Reactome curation system draws upon the expertise of independent re- searchers who author pre curation system - relies of expert knowledge31 KB (4,384 words) - 19:08, 11 April 2014
- ...sed to a release version, point some display widgets there. Point Caltech curation forms that use Person data to get it from live Datomic. Write a person edi7 KB (1,137 words) - 17:57, 17 November 2016
- ...een flagged and curated. These papers can be used as a source for verified curation flag examples.'' [[Category:Curation]]21 KB (3,156 words) - 23:03, 13 August 2010
- Throughput UNIQUE High_throughput //See BioGRID curation criteria for discussion: http://www.yeastgenome.org/help/BiogridCuration.h12 KB (1,431 words) - 19:06, 20 March 2012
- ?Transgene changes to allow curation of transgene markers.8 KB (936 words) - 16:48, 21 December 2011
- ...signs an official WBPaperID, which is needed to track the paper through WB curation paths [[Category:Curation]]17 KB (2,790 words) - 20:50, 10 January 2017
- ...caltech literature curators are starting to utilise these vectors in their curation. I have also picked up additional Fire vector kit vectors from various kit10 KB (1,176 words) - 22:24, 18 March 2014
- Link // Enable gene curation of link genes [020805 krb]12 KB (1,258 words) - 09:29, 5 October 2010
- * Caltech curation/Postgres server is migrating to AWS7 KB (1,107 words) - 16:19, 20 April 2023
- !Use - OA data type curation9 KB (1,464 words) - 14:10, 29 May 2015
- = Paper for Curation =7 KB (1,004 words) - 17:50, 13 February 2017
- * does not dump record when value in Curation status is "down right disgusted", this acts as our no dump toggle ***add curation status (app_curation_status) of "down right disgusted" so lines that I have23 KB (3,334 words) - 19:01, 31 October 2017
- Molecule curation captures chemical and drug entities that have been shown to effect the biol ...esult in bad URLs. Also, the increased use of Molecule annotation in other curation pipelines resulted in confusion with object creation. These points of confu50 KB (6,966 words) - 19:15, 13 August 2020
- [[Category:Curation]]9 KB (1,382 words) - 17:55, 16 August 2010
- ...ite genomes and the species that are non-core through their lack of manual curation.7 KB (1,182 words) - 13:50, 20 April 2012
- ...eed to avoid the notion that micropublication is more than just a database curation tool. paul will clarify the message8 KB (1,231 words) - 22:06, 25 July 2017
