Difference between revisions of "Main Page"

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This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and related nematodes. WormBase is developed by an [[WormBase Consortium|an international consortium]] of researchers and computer scientists.  
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This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and related nematodes. WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and computer scientists.  
  
 
To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the [[Wiki objectives and usage guidelines|WormBaseWiki usage guidelines]].  
 
To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the [[Wiki objectives and usage guidelines|WormBaseWiki usage guidelines]].  
  
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== Species available through WormBase ==
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== WormBoard  ==
 +
Since its inception the ''C. elegans'' field has relied on the voluntary efforts of community-minded individuals to develop and organize key resources and meetings. As the field enters its second half-century, continued growth necessitates a more formal structure for such efforts. The Worm Board has been formed to advocate for ''C. elegans'' research internationally and to foster the continued development of community resources.
  
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*[[Species available through WormBase (overview)| Overview of all species]]
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*[[WormBoard|The WormBoard Home Page]]
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*[[Brugia malayi|''Brugia malayi'']]
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**[[WormBoard#WormBoard_Charter|Charter]] -- ''Charter and mission of the WormBoard''
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*[[Caenorhabditis elegans|''Caenorhabditis elegans'']]
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**[[WormBoard#WormBoard_Members|Members]] -- ''Current and former members''
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**[http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans (Wikipedia)][[About elegans|<br>]]  
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**[[Key publications|Key publications]]  
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===WormBoard Reports===
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**[[Nomenclature|Genetic Nomenclature]]  
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*November 2020 -- ''[https://wiki.wormbase.org/images/Elections_Subcommittee_Proposal_toWBvote.docx Election Subcommittee Report (docx)]''
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**[[Other nematodes|Other nematodes]]  
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*[[WormBoard_Report:_August_2020|August 2020]]
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**[[Nematode sequencing summary|Nematode resequencing and diversity]]
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*[https://blog.wormbase.org/2020/07/18/promoting-equity-in-the-c-elegans-community July 2020]
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**[[Partslist|The C. elegans Parts List (List of Cells)]]
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*[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']]
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=== Initiatives ===
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*[[Caenorhabditis briggsae|''Caenorhabditis briggsae'']]  
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*[[C._elegans_Community_Mentor_Match_Program|C. elegans Community Mentor Match Program]]
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*[[Caenorhabditis japonica|''Caenorhabditis japonica'']]  
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*[[Caenorhabditis remanei|''Caenorhabditis remanei'']]  
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== Using WormBase  ==
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*[[Pristionchus pacificus|''Pristionchus pacificus'']]
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*[[Meloidogyne hapla|''Meloidogyne hapla'']]
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*[[Site Map|Site Map]]  
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*[[Haemonchus contortus|''Haemonchus contortus'']]
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*[[Possible_assembly_errors]] - in all Caenorhabditis species
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=== User Guides  ===
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*[http://www.wormbase.org/about/Frequently_asked_questions FAQ]
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*[[Data mining|Data mining]] - ''Learn about the methods for mining WormBase systematically''
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*[[Searching WormBase for Information About C. elegans (Wiley)|Searching WormBase for Information About C. elegans (Wiley)]]  
 +
*[[Downloads|Downloads]] - ''Download commonly requested files and datasets''
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*[[Guidelines for Users on Submitting/Reporting Data to WormBase|'''Submitting Data''']]
 +
 
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=== General Information  ===
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*[[Local installation of WormBase|Installing WormBase on your own computer]]  
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*[[Editorial policy|Editorial policy]] - ''WormBase editorial policy''
 +
 
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=== WormMine  ===
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[http://www.wormbase.org/tools/wormmine/begin.do Our WormMine instance]
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* [[WormMine|Wiki Page]]
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* [[UserGuide:WormMine|User Guide]]
  
 
== Community Resources  ==
 
== Community Resources  ==
  
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*[[WormBase_Genomes| Overview of species' genomes available in WormBase]]
 
*[http://www.wormbase.org/db/misc/laboratory?name=%2A;class=laboratory C. elegans laboratories]  
 
*[http://www.wormbase.org/db/misc/laboratory?name=%2A;class=laboratory C. elegans laboratories]  
 
*[[Meetings|Meetings]]  
 
*[[Meetings|Meetings]]  
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*[http://www.wormbase.org/forums/ Worm Community Discussion Forum] ([http://www.wormbase.org/forums/ Job postings])  
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*[http://www.wormbase.org/forums/ Worm Community Discussion Forum] ([http://forums.wormbase.org/index.php?board=1.0 Job postings])  
 
*[[Software for nematode research|Software for nematode research]]  
 
*[[Software for nematode research|Software for nematode research]]  
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*[[Related web resources|Related web resources]]
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*[[NGASP|NGASP]]
 
*[[NGASP|NGASP]]
 +
  
 
=== Reagents and Protocols ===
 
=== Reagents and Protocols ===
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*[[Strains|Strains]]  
 
*[[Strains|Strains]]  
 
*[[Reagents|Reagents]] - ''Useful reagents from third-party sources''  
 
*[[Reagents|Reagents]] - ''Useful reagents from third-party sources''  
 
*[[Cosmids/YACs|Cosmids/YACs]]  
 
*[[Cosmids/YACs|Cosmids/YACs]]  
 
*[[Fosmids|Fosmids]]
 
*[[Fosmids|Fosmids]]
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* Experimental protocols: [http://www.wormbook.org/toc_wormmethods.html WormMethods @ WormBook] | [http://www.wormbase.org/forums/ Worm Community Forum]
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* Experimental protocols:  
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**[http://www.wormbook.org/toc_wormmethods.html WormMethods @ WormBook]  
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**[http://forums.wormbase.org/index.php?board=22.0/ Worm Community Forum]
  
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=== Microarray Data ===
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=== Web Resources ===
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*[[Related web resources|Related web resources]]
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*[http://smd.stanford.edu/search.shtml  Stanford Microarray Database (SMD) search page]
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* Microarray Data Sites
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*[http://smd.stanford.edu/cgi-bin/search/nameSearch.pl SMD gene-centric search page]
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**[http://smd.stanford.edu/search.shtml  Stanford Microarray Database (SMD) search page]
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*[http://smd.stanford.edu/cgi-bin/publication/viewPublication.pl?pub_no=91 Jiang et al. (2001), PNAS 98, 218-223] (SMD data from Kim laboratory's 2001 microarray paper)
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**[http://smd.stanford.edu/cgi-bin/search/nameSearch.pl SMD gene-centric search page]
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*[ftp://smd-ftp.stanford.edu/smd/publications/91/  SMD's FTP site]
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**[http://smd.stanford.edu/cgi-bin/publication/viewPublication.pl?pub_no=91 Jiang et al. (2001), PNAS 98, 218-223] (SMD data from Kim laboratory's 2001 microarray paper)
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*[[SPELL|''SPELL'']]
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**[ftp://smd-ftp.stanford.edu/smd/publications/91/  SMD's FTP site]
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**[[SPELL|''SPELL'']]
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== Using WormBase  ==
 
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*[[Site Map|Site Map]]
 
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*[[Mirror sites and frozen releases|Mirror sites and frozen releases]]
 
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User Guides
 
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*[[User Guide|Official User Guide]]
 
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*[[Data mining|Data mining]] - ''Learn about the methods for mining WormBase systematically''
 
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*[[Searching WormBase for Information About C. elegans (Wiley)|Searching WormBase for Information About C. elegans (Wiley)]]
 
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*[[Glossary of terms|Glossary of terms]]
 
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*[[FAQs|FAQs]]
 
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*[[Downloads|Downloads]] - ''Download commonly requested files and datasets''
 
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*[[Guidelines for Users on Submitting/Reporting Data to WormBase|Submitting data and reporting errors]]
 
  
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General Information
 
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*[[Release Schedule|Release Schedule]] - ''When to expect the next release of WormBase, and information on past releases''
 
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*[[Citing WormBase|Citing WormBase]]
 
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*[[Presentations|Presentations]] | [[Publications|Publications]] - ''public information presented by the developers of WormBase''
 
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*[[Local installation of WormBase|Installng WormBase on your own computer]]
 
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*[[Editorial policy|Editorial policy]] - ''WormBase editorial policy''
 
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*[[Acceptable use policy|Acceptable use policy]]
 
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*[[WormBaseWiki:Copyrights|Copyright statement]]
 
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*[[Acceptable use policy#Privacy statement|Privacy statement]]
 
  
 
== Staying up-to-date  ==
 
== Staying up-to-date  ==
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[http://www.wormbase.org WormBase] offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.  
 
[http://www.wormbase.org WormBase] offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.  
  
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* Live Help Desk: [http://friendfeed.com/rooms/wormbase The WormBase Room on FriendFeed]
 
 
* Twitter: [http://www.twitter.com/wormbase Status updates], [http://www.twitter.com/wormbase_commit Software commit messages]  
 
* Twitter: [http://www.twitter.com/wormbase Status updates], [http://www.twitter.com/wormbase_commit Software commit messages]  
 
* Mailing Lists: [[Mailing lists#help|General questions]] | [[Mailing lists#developers|Developers]] -- [[Mailing lists|More...]]  
 
* Mailing Lists: [[Mailing lists#help|General questions]] | [[Mailing lists#developers|Developers]] -- [[Mailing lists|More...]]  
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== Internal Documentation ==  
 
== Internal Documentation ==  
  
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*[[Developer documentation|Developer documentation]]
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*[[WormBase Staff Resources]] -- ''A guide to the tools available for WormBase staff''
 +
 
 +
*[[:Category:Web_Dev|Developer documentation]]
  
 
*[[Caltech documentation]]
 
*[[Caltech documentation]]
 +
 +
*[[:Category:Hinxton|Hinxton documentation]]
 +
 +
*[[Working Groups|Working Groups]]
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 +
*[[WormBase_database_schema|Model changes]] | [[Outstanding Model questions]]
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 +
*[[WormBase SAB Meeting|WormBase SAB Meeting]]
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 +
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[[Category:User Guide]]
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[[Category:Developer documentation]]
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[[Category:WikiMainPage]]
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[[Category:Meetings]]
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[[Category:Curation]]

Latest revision as of 17:11, 25 November 2020

This is the official wiki site for WormBase, the database of the model organism Caenorhabditis elegans and related nematodes. WormBase is developed by an international consortium of researchers and computer scientists.

To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the WormBaseWiki usage guidelines.

WormBoard

Since its inception the C. elegans field has relied on the voluntary efforts of community-minded individuals to develop and organize key resources and meetings. As the field enters its second half-century, continued growth necessitates a more formal structure for such efforts. The Worm Board has been formed to advocate for C. elegans research internationally and to foster the continued development of community resources.

WormBoard Reports

Initiatives

Using WormBase

User Guides

General Information

WormMine

Our WormMine instance

Community Resources


Reagents and Protocols

Web Resources


Staying up-to-date

WormBase offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.

Internal Documentation

Retrieved from "https://wiki.wormbase.org/index.php?title=Main_Page&oldid=36051"