Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
  
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= 2021 Meetings =
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[[WormBase-Caltech_Weekly_Calls_January_2021|January]]
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[[WormBase-Caltech_Weekly_Calls_February_2021|February]]
  
= 2021 Meetings =
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[[WormBase-Caltech_Weekly_Calls_March_2021|March]]
== January 14th, 2021 ==
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[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
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[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
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[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
  
===PubMed LinkOut to WormBase Paper Pages (Kimberly) ===
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[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
* Other databases [https://www.ncbi.nlm.nih.gov/projects/linkout/doc/nonbiblinkout.html link out from PubMed] to their respective paper pages
 
* For example, https://pubmed.ncbi.nlm.nih.gov/20864032/ links out to GO and MGI paper pages
 
* Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help
 
* Work on this next month (after AFP and GO grant submissions)?
 
  
===Update cycle for HGNC data in the OA (Ranjana) ===
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[[WormBase-Caltech_Weekly_Calls_August_2021|August]]
*Juancarlos had these questions for us:
 
<pre style="white-space: pre-wrap;
 
white-space: -moz-pre-wrap;
 
white-space: -pre-wrap;
 
white-space: -o-pre-wrap;
 
word-wrap: break-word">
 
  
There's a script here that repopulates the postgres obo_*_hgnc tables
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[[WormBase-Caltech_Weekly_Calls_September_2021|September]]
based off of Chris and Wen's data
 
/home/postgres/work/pgpopulation/obo_oa_ontologies/populate_obo_hgnc.pl
 
  
It's not on a cronjob, because I think the files are not updated that
 
often.  Do we want to run this every night, or run it manually when
 
the files get re-generated ?  Or run every night, and check if the
 
files's timestamps have changed, then repopulate postgres ?
 
  
</pre>
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== October 14, 2021 ==
  
===Minutes===
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=== WormBase HD YouTube channel has ads ===
====PubMed LinkOut to WormBase Paper Pages====
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* Is there a way to turn them off? Seems like we cannot remove them entirely
  
====Update cycle for HGNC data in the OA====
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=== Form headers and footers no longer updating ===
*We will update when Alliance updates the data
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* WS version number falls out of date; Juancarlos will manually update
*Juancarlos will set it to check the timestamps and if they change will do an update for the OAs
 

Latest revision as of 18:27, 14 October 2021

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October 14, 2021

WormBase HD YouTube channel has ads

  • Is there a way to turn them off? Seems like we cannot remove them entirely

Form headers and footers no longer updating

  • WS version number falls out of date; Juancarlos will manually update