Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "WormBase Documentation" on this wiki! See also the search results found.
- ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:4 KB (568 words) - 11:06, 23 May 2011
- -rw-rw-rw- wormbase.conf ...(henceforth "the web application") and a series of external models in the WormBase::API namespace.10 KB (1,357 words) - 14:03, 19 June 2014
- [ftp://ftp.sanger.ac.uk/pub2/wormbase/data/compara.tar.bz2 Compara tarball for WS163] (mysql dumps) .../software/compara/index.html Compara Page] (including how to install / API documentation)21 KB (2,963 words) - 18:18, 11 August 2010
- == Using WormBase for bioinformatics == .... elegans genome (eg., http://ws120.wormbase.org). If you need to refer to WormBase in a publication, please refer to one of the freeze versions.3 KB (514 words) - 15:39, 24 September 2007
- *Dumping process changes outlined [https://docs.google.com/a/wormbase.org/document/d/1nnuQY9OfV2VsBORj01ocoC985-5kOgxYCGOAZDeeKLQ/edit?pli=1 here ****Documentation6 KB (864 words) - 15:32, 6 June 2013
- 2. Find and follow the tharris/wormbase project: http://bitbucket.org/tharris/wormbase/4 KB (616 words) - 18:35, 17 August 2010
- $WORMBASE/cgi-perl/misc/paper: CGI script that contains the code segment $WORMBASE/cgi-perl/misc/geo_map_by_paper: CGI script that generates the display4 KB (711 words) - 23:25, 13 August 2010
- == About RSS feeds at WormBase == WormBase news feeds (using the RSS format) provide a convenient mechanism for stayin2 KB (390 words) - 08:28, 13 June 2012
- ! genenames at wormbase dot org Back to [[WormBase SVMs]]2 KB (241 words) - 17:46, 17 August 2010
- The following documentation refers to google's sitemapgen. This has been supplanted by Google Site Map To facilitate the indexing of WormBase content, a [https://www.google.com/webmasters/sitemaps/login Google Sitemap4 KB (553 words) - 17:31, 19 June 2014
- GFF data is provided to CSHL as part of the Wormbase build. The data is provided in GFF2 format and converted to GFF3 at the CSH Conversion script: $WORMBASE/util/import_export/wormbase_gff2togff3.pl2 KB (286 words) - 18:26, 11 August 2010
- The Wormbase BLAST/BLAT page can be accessed by the "Blast / Blat" link on the top navig $WORMBASE/cgi-perl/searches/blast_blat (CGI script)4 KB (506 words) - 20:45, 10 August 2010
- WormBase uses virtual machines to quickly and easily create frozen releases. scp brie6.cshl.org:/usr/local/vmx/wormbase-WS110.2003.10.01.tgz .2 KB (316 words) - 18:22, 11 August 2010
- There are two types of interaction objects in Wormbase: Interaction and YH. Interaction class holds a number of interaction types ...aims to provide a consolidated compact view of the interaction objects in Wormbase. It replaces the previous views.2 KB (328 words) - 23:39, 13 August 2010
- Configuring a fresh install of Cent OS 5 for WormBase [[Category:Developer documentation]]2 KB (225 words) - 20:53, 10 August 2010
- [[Caltech documentation]]<br> |WormBase re-evalutation||6/22-7/5: IWM||(?)2 KB (241 words) - 23:04, 13 August 2010
- Notes on installing Gbrowse in the WormBase environment. One barrier to packaging GBrowse with the rest of the wormbase code-base in CVS has been the architecture dependent paths that GBrowse use2 KB (339 words) - 23:10, 13 August 2010
- 6. Edit /usr/local/wormbase/conf/localdefs.pm and httpd.conf with the appropriate hostname tar czf wormbase-WS100.2003.05.13-server.tgz wormbase-WS100.2003.05.132 KB (282 words) - 23:34, 13 August 2010
- *WormBase posters will be assigned a session and poster board ***[https://github.com/WormBase/website/issues/1205 Genes]2 KB (295 words) - 16:39, 16 May 2013
- ...spec/models.wrm?root=ensembl&view=log as specified in the ?Paper model] in WormBase. ...daily to select those that should be included in the curation pipeline and WormBase bibliography.3 KB (403 words) - 16:02, 27 March 2019
