User contributions
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Jump to navigationJump to search- 10:55, 23 July 2009 diff hist +3 Paper Type
- 10:55, 23 July 2009 diff hist +45 Paper Type
- 10:54, 23 July 2009 diff hist +1,177 Paper Type
- 14:48, 22 July 2009 diff hist +374 Sentence Saver for Category Seed
- 14:42, 22 July 2009 diff hist +86 Sentence Saver for Category Seed
- 14:40, 22 July 2009 diff hist +756 Sentence Saver for Category Seed
- 10:27, 22 July 2009 diff hist -22 Caltech documentation →Textpresso
- 10:25, 22 July 2009 diff hist +54 Caltech documentation
- 16:36, 21 July 2009 diff hist +1,443 N Sentence Saver for Category Seed New page: ==Basic Functionality== *The sentence saver for seeding categories was intended to be used as a starting point for seeding new categories that could then be tested in Textpresso searches....
- 16:10, 21 July 2009 diff hist +38 Textpresso →Curation Tools and Tool Feature Requests
- 13:28, 21 July 2009 diff hist +97 Paper Pipeline - To Do List →Long-Term
- 13:15, 21 July 2009 diff hist +88 Paper Pipeline - To Do List →Long-Term
- 13:14, 21 July 2009 diff hist +303 Paper Pipeline - To Do List →Long-Term
- 13:01, 21 July 2009 diff hist +228 Paper Pipeline - To Do List →Short-Term
- 12:59, 21 July 2009 diff hist +35 Paper Pipeline - To Do List →Long-Term
- 12:30, 21 July 2009 diff hist +17 Paper Pipeline - To Do List →Long-Term
- 12:28, 21 July 2009 diff hist +81 Paper Pipeline - To Do List
- 12:23, 21 July 2009 diff hist +241 N File:WormBase Paper Type COMMENT.xls A comparison of publication type for all WormBase papers currently classified as COMMENT. Table lists the WBPaper ID, the PMID, the PubMed publication type, the WormBase publication type, and what the publication actually is in the journal. current
- 12:05, 21 July 2009 diff hist +5 Paper Pipeline - To Do List →Short-Term
- 12:04, 21 July 2009 diff hist +1,911 Paper Pipeline - To Do List
- 11:32, 21 July 2009 diff hist +165 Paper Pipeline - To Do List
- 11:26, 21 July 2009 diff hist +122 Paper Pipeline - To Do List
- 11:23, 21 July 2009 diff hist 0 Paper Pipeline - To Do List
- 11:20, 21 July 2009 diff hist +53 Paper Pipeline - To Do List
- 11:16, 21 July 2009 diff hist +240 Paper Pipeline - To Do List
- 11:01, 21 July 2009 diff hist -53 Paper Pipeline - To Do List
- 11:00, 21 July 2009 diff hist +53 Paper Pipeline - To Do List
- 10:53, 21 July 2009 diff hist +10 Paper Pipeline - To Do List
- 10:53, 21 July 2009 diff hist +123 Paper Pipeline - To Do List
- 10:51, 21 July 2009 diff hist +1 Write up a summary of the weekly checking script - Kimberly and Juancarlos current
- 10:51, 21 July 2009 diff hist -1 Write up a summary of the weekly checking script - Kimberly and Juancarlos
- 10:50, 21 July 2009 diff hist +21 Paper Pipeline - To Do List
- 10:50, 21 July 2009 diff hist +92 Paper Pipeline - To Do List
- 10:47, 21 July 2009 diff hist +169 N Write up a summary of the weekly checking script - Kimberly and Juancarlos New page: Weekly checking script: Runs every Sunday at 1AM. Takes postgres entries '''missing''' paper author, pages, title, type and year and checks PudMed for associated data.
- 10:44, 21 July 2009 diff hist +11 Paper Pipeline - To Do List
- 10:43, 21 July 2009 diff hist +299 Paper Pipeline - To Do List
- 10:33, 21 July 2009 diff hist +59 N Paper Pipeline - To Do List New page: #Correct invalid PMIDs and their associated paper types
- 10:33, 21 July 2009 diff hist +33 Paper Pipeline
- 18:47, 20 July 2009 diff hist +7 Invalid PMIDs in postgres and WormBase
- 18:30, 20 July 2009 diff hist +3,191 N Invalid PMIDs in postgres and WormBase New page: In the course of trying to update the PaperType tag in the postgres and WormBase data models, we came across 13 WBPapers with invalid PMIDs. Here is a breakdown of why those PMIDs are now...
- 17:25, 20 July 2009 diff hist +44 Paper Pipeline
- 17:20, 13 July 2009 diff hist +40 Paper Type
- 17:20, 13 July 2009 diff hist -2 Paper Type
- 17:20, 13 July 2009 diff hist +25 Paper Type
- 17:19, 13 July 2009 diff hist +274 N Paper Type New page: Here are tables that summarize information about PubMed and WormBase Publication Types as of 07/2009. PubMed currently has over ~140 publication types; the full list, as well as an explan...
- 17:14, 13 July 2009 diff hist +3 Paper Pipeline
- 16:01, 2 July 2009 diff hist +1,561 Phenote cgi wish list
- 17:59, 29 June 2009 diff hist +64 Phenote cgi wish list
- 17:04, 29 June 2009 diff hist +276 Phenote cgi wish list
- 13:45, 18 June 2009 diff hist +1,374 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:56, 11 June 2009 diff hist +57 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:55, 11 June 2009 diff hist +60 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:52, 11 June 2009 diff hist +99 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:50, 11 June 2009 diff hist -1 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:50, 11 June 2009 diff hist +119 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:48, 11 June 2009 diff hist 0 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:47, 11 June 2009 diff hist +88 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:45, 11 June 2009 diff hist -1 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:45, 11 June 2009 diff hist +321 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:39, 11 June 2009 diff hist +118 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:38, 11 June 2009 diff hist +105 WormBase-Caltech Weekly Calls →June 11, 2009
- 13:37, 11 June 2009 diff hist +307 N WormBase-Caltech Weekly Calls New page: ==June 11, 2009== *Discussion of allele-paper connections **Jolene has a Textpresso-based pipeline for identifying alleles in papers **Alleles get associated with a paper if there is pheno...
- 13:08, 11 June 2009 diff hist +40 Caltech documentation
- 17:44, 9 June 2009 diff hist +38 Textpresso →Paper Type and Textpresso Searches
- 17:43, 9 June 2009 diff hist +5 Textpresso →Paper Type and Textpresso Searches
- 17:32, 9 June 2009 diff hist +1,072 Textpresso →Paper Type and Textpresso Searches
- 17:09, 9 June 2009 diff hist +359 Textpresso
- 14:57, 9 June 2009 diff hist +99 Instructions for curators
- 12:04, 9 June 2009 diff hist +144 Instructions for curators →Possible New Flags
- 12:41, 8 June 2009 diff hist +71 Instructions for curators
- 11:59, 5 June 2009 diff hist +679 Getting Papers into WormBase
- 19:47, 1 June 2009 diff hist 0 Types of Papers in WormBase (and Postgres)
- 18:10, 1 June 2009 diff hist +1,616 Types of Papers in WormBase (and Postgres)
- 16:22, 1 June 2009 diff hist +289 Types of Papers in WormBase (and Postgres)
- 15:07, 1 June 2009 diff hist +326 N Types of Papers in WormBase (and Postgres) New page: For purposes of triage, indexing (data type identification), and fact extraction, here are the types of papers in Postgres and hence, WormBase: #Papers acquired from PubMed searches using...
- 14:53, 1 June 2009 diff hist -1 Paper Pipeline
- 14:53, 1 June 2009 diff hist +49 Paper Pipeline
- 18:41, 20 May 2009 diff hist +33 Getting Papers into WormBase
- 15:08, 20 May 2009 diff hist +2 Getting Papers into WormBase
- 15:07, 20 May 2009 diff hist +11 Getting Papers into WormBase
- 14:35, 20 May 2009 diff hist +849 Getting Papers into WormBase
- 13:43, 20 May 2009 diff hist +1,685 N Concise Descriptions New page: '''Keeping Gene Names Up-to-Date''' From Kimberly Concise descriptions typically begin with the name of the gene, either its CGC name, e.g. unc-7, or its sequence name, e.g. Y24F12A.2. ...
- 20:30, 15 May 2009 diff hist +58 N Gene Ontology New page: #CCC - GO Cellular Component Curation using Textpresso
- 20:27, 15 May 2009 diff hist +191 N Getting Papers into WormBase New page: From Kimberly: *This is how I've been uploading papers as of ~February 2009: **Every day, I go to [http://www.ncbi.nlm.nih.gov/pubmed/ PubMed] and perform a search using the keyword elega...
- 19:57, 15 May 2009 diff hist +22 Paper Pipeline
- 19:57, 15 May 2009 diff hist +34 Paper Pipeline
- 19:55, 15 May 2009 diff hist +12 Meeting Abstracts
- 19:35, 15 May 2009 diff hist +217 Meeting Abstracts
- 20:42, 14 May 2009 diff hist +10 Meeting Abstracts
- 19:50, 14 May 2009 diff hist -1 Meeting Abstracts
- 19:49, 14 May 2009 diff hist +94 Meeting Abstracts
- 19:47, 14 May 2009 diff hist +1,164 Meeting Abstracts
- 19:16, 14 May 2009 diff hist +65 N Meeting Abstracts New page: '''Obtaining and Entering Worm Meeting Abstracts into WormBase'''
- 19:15, 14 May 2009 diff hist +22 N Paper Pipeline New page: #Meeting Abstracts
- 19:01, 14 May 2009 diff hist +95 Caltech documentation
- 15:00, 29 April 2009 diff hist +3,559 N 3rd International BioCurator Meeting, April 16th - 19th, 2009, Berlin, Germany New page: '''BioCurator Meeting Notes''' - Berlin, 2009 - Kimberly Van Auken 221 participants from 21 different countries '''Community Annotation''' work flow is an increasingly important concep...
- 14:55, 29 April 2009 diff hist +85 Project-wide documentation
- 20:14, 8 December 2008 diff hist +55 Phenotype2GO Mappings File
- 20:12, 8 December 2008 diff hist +5,481 N Phenotype2GO Mappings File New page: WBPhenotype0000022 long GO:0040015 negative regulation of multicellular organism growth <br>WBPhenotype0000025 blistered GO:0040002 collagen and cuticulin-based cuticle developm...
- 15:46, 14 November 2007 diff hist +25 N Caltech documentation New page: Phenotype2GO Mappings