Caltech documentation

Table of Contents

First Pass Curation

• First-pass flagging pipelines
• First-pass to Curation
• Datatypes flagged

Automation and Text Mining Approaches

• Curation Tasks

• Schedule for Presentations

Datatype Curation

• Antibody
• citace data assignments
• Concise Descriptions
• Gene Ontology
• Gene-Paper Associations
• Gene Regulation
• Gene Interaction
• Paper Pipeline
• Phenotypes
• RNAi
• Transgenes
• Molecule
• Process pages
• Pictures

postgres

• WBGene information and status pipeline

Caltech weekly meetings

• WormBase-Caltech Weekly Calls

Conference Calls

• November 25, 2009 - Sequence Curation Flags

Software/tool development and technical issues

• Phenote cgi wish list
• Ontology Annotator wish list

Textpresso

• Textpresso
• How to make a new Textpresso category

SVMs for First Pass Curation

• What are SVMs?
• SVM Guidelines
• WormBase SVMs
• dictyBase
• FlyBase

GSA markup

• GSA Markup SOP
• GSA linking pipeline
• Entity classes and problems
  • Papers that have been markedup
  • Markup excerpts
• Future Entities for markup

User Guide 2010

Table of Contents