Caltech documentation

First Pass Curation

• First-pass flagging pipelines
• First-pass to Curation
• Data types used on first-pass forms

Datatype Curation

• citace data assignments
• Concise Descriptions
• Gene Ontology
• Gene-Paper Associations
• Gene Regulation
• Paper Pipeline
• Phenotypes
• RNAi

Caltech weekly meetings

• WormBase-Caltech Weekly Calls

Conference Calls

• November 25, 2009 - Sequence Curation Flags

Software/tool development and technical issues

• Phenote cgi wish list
• Ontology Annotator wish list

Textpresso

• Textpresso
• How to make a new Textpresso category

SVMs for First Pass Curation

• What are SVMs?
• SVM Guidelines
• WormBase SVMs
• dictyBase
• FlyBase

GSA markup

• GSA Markup SOP
• GSA linking pipeline
• Entity classes and problems
  • Papers that have been markedup
  • Markup excerpts

Process Pages

• Overview of process pages
  • Example process pages
• WBProcess Model build

Molecule Pages

• Overview of molecule pages
  • Molecule papers
  • Example molecule pages
• Molecule model build