Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Monarch phenotype data exchange format; can include many levels of detail | * Monarch phenotype data exchange format; can include many levels of detail | ||
* Common challenge: identifying the single causative agent/mutation | * Common challenge: identifying the single causative agent/mutation | ||
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| + | == June 9, 2016 == | ||
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| + | === Topic 1 === | ||
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| + | === Topic 2 === | ||
Revision as of 17:58, 9 June 2016
Contents
Previous Years
2016 Meetings
June 2, 2016
SimpleMine
- Wen will create ticket to create wormbase.org URL
- Will go under Tools menu
- Ranjana will make blog post once it is live
Postgres Timestamps
- Wen, Chris, and Juancarlos have been working on updating older timestamps for OA entries in Postgres
- For OA entries generated upon creation of some OA's, the Postgres timestamp is the data of OA creation, not the original data of the object
- Chris identified all objects from various OAs that had the same initial import timestamp, Wen determined the original ACEDB timestamps for those objects, and Juancarlos is updating the OA entries (curator timestamps) to reflect the object's original timestamp
- This will be good for consistency going forward and for tracking history of object generation over time
Transgenome project
- Daniela spoke to developer on project
- They're fixing/cleaning up data on their end
- Working on mapping fosmids to latest release of WormBase
- Probably will import data in a month
UMOD phenotype call yesterday
- Discussed phenotype data associations
- Many MODs curate phenotypes to genotype; cannot always make direct, unambiguous associations to a single gene
- SGD curate to gene, using controlled vocabulary
- Monarch phenotype data exchange format; can include many levels of detail
- Common challenge: identifying the single causative agent/mutation
