Difference between revisions of "WormBase-Caltech Weekly Calls"
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* For long term, we will want to build a curation tool directly on top of Datomic; will need to model currently un-dumped fields in Datomic | * For long term, we will want to build a curation tool directly on top of Datomic; will need to model currently un-dumped fields in Datomic | ||
* Juancarlos has a few action items to test reading from and writing to Datomic in a simple manner | * Juancarlos has a few action items to test reading from and writing to Datomic in a simple manner | ||
+ | |||
+ | === CITace upload === | ||
+ | * Upload files to Wen by Tuesday Feb 16, 10am | ||
+ | |||
+ | === Life stage ontology update === | ||
+ | * To accommodate flat worms, will make "worm life stage" root node with "flat worm..." and "nematode (roundworm)..." children |
Revision as of 20:03, 11 February 2016
Contents
Previous Years
2016 Meetings
February 11, 2016
Postgres data not in ACEDB
- Should we this data get into ACEDB to be converted to Datomic (via the existing pipeline)? Maybe, but only temporarily
- We will need to learn to model in Datomic to start building curation tools that run off of Datomic
- Juancarlos has access to Colonnade & TRACE-view (table maker tool and web interface to view Datomic data like in ACEDB)
- For long term, we will want to build a curation tool directly on top of Datomic; will need to model currently un-dumped fields in Datomic
- Juancarlos has a few action items to test reading from and writing to Datomic in a simple manner
CITace upload
- Upload files to Wen by Tuesday Feb 16, 10am
Life stage ontology update
- To accommodate flat worms, will make "worm life stage" root node with "flat worm..." and "nematode (roundworm)..." children