Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchm (→April 21, 2016) |
|||
Line 48: | Line 48: | ||
=== Author submission forms === | === Author submission forms === | ||
− | * Cell Press | + | * Cell Press generating simple 3-column table asking for reagents |
+ | * Likely has a for-profit incentive; we need to push data tables that aid the MODs | ||
+ | * Chris will send around the table for minimum information of phenotype data | ||
+ | * Chris will look into a similar table for interactions | ||
=== File content changes === | === File content changes === | ||
* GAFs, for example, get changed | * GAFs, for example, get changed | ||
* We need a mechanism/protocol to make notes of changes to file formats, etc. | * We need a mechanism/protocol to make notes of changes to file formats, etc. |
Revision as of 16:59, 21 April 2016
Contents
Previous Years
2016 Meetings
April 7, 2016
Tissue-enrichment tool
- Juancarlos and Raymond working on
- How to best integrate this into WormBase?
- Best to have all production code/material in one place, but could set up a proxy if it's already up and running
- Considering we don't know yet how popular the tool will be, the proxy could be a sufficient first step
- Could be a subdomain, e.g. tissueenrichement.wormbase.org, similar to the data submission forms
- Is this adaptable for the other MODs/organisms? Will submit the paper first
Karen's talk at ZFIN
- Talk went well
- some interest with SVM
- Having good discussions about data types and nomenclature
- Have their own reagent mapping pipeline to their genome browser
Daniela starting on gene regulation curation
- Daniela working with Xiaodong to learn the curation process
- Xiaodong's last day, next Friday 16th
April 21, 2016
Author submission forms
- Cell Press generating simple 3-column table asking for reagents
- Likely has a for-profit incentive; we need to push data tables that aid the MODs
- Chris will send around the table for minimum information of phenotype data
- Chris will look into a similar table for interactions
File content changes
- GAFs, for example, get changed
- We need a mechanism/protocol to make notes of changes to file formats, etc.