Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Working on mapping fosmids to latest release of WormBase | * Working on mapping fosmids to latest release of WormBase | ||
* Probably will import data in a month | * Probably will import data in a month | ||
| + | |||
| + | === UMOD phenotype call yesterday === | ||
| + | * Discussed phenotype data associations | ||
| + | * Many MODs curate phenotypes to genotype; cannot always make direct, unambiguous associations to a single gene | ||
| + | * SGD curate to gene, using controlled vocabulary | ||
| + | * Monarch phenotype data exchange format; can include many levels of detail | ||
| + | * Common challenge: identifying the single causative agent/mutation | ||
Revision as of 16:09, 2 June 2016
Contents
Previous Years
2016 Meetings
June 2, 2016
SimpleMine
- Wen will create ticket to create wormbase.org URL
- Will go under Tools menu
- Ranjana will make blog post once it is live
Postgres Timestamps
- Wen, Chris, and Juancarlos have been working on updating older timestamps for OA entries in Postgres
Transgenome project
- Daniela spoke to developer on project
- They're fixing/cleaning up data on their end
- Working on mapping fosmids to latest release of WormBase
- Probably will import data in a month
UMOD phenotype call yesterday
- Discussed phenotype data associations
- Many MODs curate phenotypes to genotype; cannot always make direct, unambiguous associations to a single gene
- SGD curate to gene, using controlled vocabulary
- Monarch phenotype data exchange format; can include many levels of detail
- Common challenge: identifying the single causative agent/mutation
