Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== Curation pipeline comparisons === | === Curation pipeline comparisons === | ||
− | * Would be nice to | + | * Would be nice to compare how MODs prioritize curation, triage papers, etc. |
* How many MODs curate paper-by-paper (for all datatypes at once) vs. our method, by datatype? | * How many MODs curate paper-by-paper (for all datatypes at once) vs. our method, by datatype? | ||
** WB & MGI curate by datatype, most others by paper (for all datatypes) | ** WB & MGI curate by datatype, most others by paper (for all datatypes) | ||
* How are all MODs doing in terms of paper coverage? | * How are all MODs doing in terms of paper coverage? | ||
** Do we need more manual effort, more automation? How much, given cost of each? | ** Do we need more manual effort, more automation? How much, given cost of each? |
Revision as of 16:32, 5 May 2016
Contents
Previous Years
2016 Meetings
May 5, 2015
Tissue enrichment tool
- Some slight modifications have been made
- Raymond/Juancarlos request testing
- Made adjustments to gene name handling
- Tool could go live for the next release
- Data will remain frozen at WS252
Gene summaries
- Paul asked Norbert about gene descriptions
- FB has been getting good community response for contributing gene descriptions
- Automation still sounds like the right way to go
- Ranjana will look at summaries at other MOD sites
Phenotype display
- MGI/MGD had a graph display of phenotype ontology (Paul S.)
- Made phenotype ontology slim for the summary heatmaps
- How do all of the MODs display phenotypes?
Progress reports
- Curators can write a paragraph on innovation
- Community curation (report numbers)
- WOBr
- SObA
- Automated descriptions
- Micropublications
Curation pipeline comparisons
- Would be nice to compare how MODs prioritize curation, triage papers, etc.
- How many MODs curate paper-by-paper (for all datatypes at once) vs. our method, by datatype?
- WB & MGI curate by datatype, most others by paper (for all datatypes)
- How are all MODs doing in terms of paper coverage?
- Do we need more manual effort, more automation? How much, given cost of each?