Difference between revisions of "WormBase-Caltech Weekly Calls"
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* There is a common portal for human diseases in progress | * There is a common portal for human diseases in progress | ||
* Should consider Monarch initiative approach | * Should consider Monarch initiative approach | ||
| + | |||
| + | === AddGene & WB constructs === | ||
| + | * Karen working with AddGene to pull in worm reagents (plasmids/constructs) | ||
| + | * AddGene does want to have better linking to WormBase | ||
| + | |||
| + | === Metabolomic data === | ||
| + | * Can we show chemical structures for metabolites? | ||
| + | * We may be able to use ChEBI data | ||
Revision as of 17:35, 3 March 2016
Contents
Previous Years
2016 Meetings
March 3, 2016
Sentence-level indexing
- Chris playing around with flagging sentences as positive/negative for phenotype and flagging keywords as true or false positives
- It may be helpful to objectify sentences and generate unambiguous, unique IDs for sentences
- There will likely be difficulty in unambiguously pulling out sentences from re-processed papers
Proteomic datasets
- Wen wants to systematically collect proteomic datasets
- Many are scattered across different resources
- Would also help ParaSite to index similar datasets for parasites
- MESH terms may help identify proteomic papers
MOD-human disease collaboration
- FlyBase working on a shared template for curating human disease
- SGD, ZFIN, MGI, FlyBase, and WormBase meeting at Caltech to discuss
- One priority is minimizing redundancy of effort
- There is a common portal for human diseases in progress
- Should consider Monarch initiative approach
AddGene & WB constructs
- Karen working with AddGene to pull in worm reagents (plasmids/constructs)
- AddGene does want to have better linking to WormBase
Metabolomic data
- Can we show chemical structures for metabolites?
- We may be able to use ChEBI data
