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  • Scripts for file dumping and conversion
    /home/acedb/ranjana/citace_upload/go_curation/protein2go_migration/split_into_curators. /home/acedb/ranjana/citace_upload/go_curation/protein2go_migration/
    539 bytes (84 words) - 19:05, 25 January 2013
  • Data mining
    #[[AceDB classes|AceDB classes]] - ''A comprehensive list of AceDB classes'' #[[AceDB classes tutorial|AceDB classes tutorial]] -''Examples and descriptions of commonly accessed classe
    2 KB (264 words) - 01:36, 1 April 2022
  • New Model Implementation Checklist
    **Status: file created, not yet checked in ACeDB **Status: file created, not yet checked in ACeDB
    1 KB (199 words) - 19:08, 10 February 2014
  • Quick response cheatsheet
    - use top command to check if sgiface is at 100%, if so restart ACeDB ==Restart AceDB==
    784 bytes (128 words) - 21:31, 5 November 2015
  • UserGuide:Display Tools
    The Tree Display shows the data relationships according to each ACeDB data model. Shown in the diagram: red color shows tags, blue color indicate ACeDB Schema
    2 KB (266 words) - 18:26, 17 August 2010
  • Xapian and wormbase
    cd /usr/local/wormbase/acedb/bin acedb> @dump_ace_for_search.script
    658 bytes (108 words) - 16:11, 5 October 2011
  • Orthology, Homology and Paralog data in WormBase
    it is in the ACeDB database on the genes as ortholog/paralog, but we also dump it since a whil ...files, as well as here: ftp://ftp.wormbase.org/pub/wormbase/releases/WS243/acedb /Non_C_elegans_BLAST
    2 KB (336 words) - 14:08, 27 August 2015
  • Importing Protein Structure Data
    brie3:/usr/local/acedb/datasets/structure_data/ cshace: brie3:/usr/local/acedb/dumpdb/
    3 KB (408 words) - 23:36, 13 August 2010
  • Updating WormMart
    WormMart is built every 5 releases of AceDB. Currently, the machine ls2.res.oicr.on.ca is used to build WormMart, then === Get AceDB ===
    2 KB (289 words) - 18:24, 17 August 2010
  • Update Matrix Template
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    3 KB (489 words) - 18:14, 17 August 2010
  • ModENCODE TilingArray
    == Tiling Array Related ACeDB Models ==
    2 KB (220 words) - 00:19, 21 January 2011
  • General specifications
    ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles/ ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
    2 KB (204 words) - 19:18, 17 November 2011
  • Update Matrix WS205
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    3 KB (530 words) - 18:14, 17 August 2010
  • Data mining:WQL tutorial
    [http://grain.jouy.inra.fr/ggpages/ggpages/aboutacedbquery.html About ACEDB Queries (not worm-specific)]
    296 bytes (41 words) - 15:12, 16 June 2011
  • Update Matrix WS209
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (717 words) - 18:20, 17 August 2010
  • Update Matrix WS214
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (719 words) - 18:21, 17 August 2010
  • Update Matrix WS208
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (738 words) - 18:20, 17 August 2010
  • WBConfCall 2021.12.16-Agenda and Minutes
    It's a acedb availability issue; Todd will investigate.
    295 bytes (40 words) - 16:40, 16 December 2021
  • Update Matrix WS211
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (723 words) - 18:21, 17 August 2010
  • Update Matrix WS212
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (723 words) - 18:21, 17 August 2010
  • Update Matrix WS210
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (725 words) - 18:20, 17 August 2010
  • C.remanei
    == ACeDB == The default code is used to show the ACeDB data and there is a GBrowse version available to show the GFF annotation. I
    2 KB (324 words) - 19:34, 11 August 2010
  • WebDev 2009.09.23-Agenda and Minutes
    == 5. Discuss AceDB -> PF (Xiaoqi; 10 minutes) ==
    2 KB (252 words) - 09:25, 28 September 2009
  • Update Matrix WS213
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (725 words) - 18:21, 17 August 2010
  • Update Matrix WS206
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (610 words) - 18:20, 17 August 2010
  • Update Matrix WS215
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (735 words) - 18:22, 17 August 2010
  • Update Matrix WS217
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (735 words) - 18:22, 17 August 2010
  • Phenote .ace citace upload
    /home/acedb/karen/WS_upload_scripts/phenotype/use_package.pl*<br> /home/acedb/karen/WS_upload_scripts/paper_object/get_paper_object.pl*
    5 KB (749 words) - 19:47, 17 May 2018
  • Update Matrix WS207
    |Has a wormbase_RELEASE directory been created in /u/l/w/acedb? |Mirror and Unpack AceDB files
    4 KB (762 words) - 18:20, 17 August 2010
  • Website:WormMine Builds
    ===== AceDB Dump ===== Did not specify AceDB dir in $ACEDB. Searching for tace...
    9 KB (947 words) - 18:27, 12 August 2014
  • AceDB class-Y2H
    [[Category:AceDB]]
    274 bytes (40 words) - 21:51, 11 August 2010
  • WormBase Model:Map error
    AceDB internal class
    169 bytes (19 words) - 14:38, 4 October 2010
  • WormBase Model:ManyMap
    Looks like an acedb internal as the xace code looks for it.
    206 bytes (28 words) - 14:34, 4 October 2010
  • WBConfCall 2023.10.05–Agenda and Minutes
    Example of how Strain curated in NS looks in ACeDB:
    339 bytes (48 words) - 22:45, 4 October 2023
  • UserGuide:Genetic Map
    ...forward genetic mapping. The WormBase Genetic Map inherited its look from ACeDB, however because of internet interface, many features have been changed. ACEDB MAP IMAGE SUBMENU
    4 KB (720 words) - 18:28, 17 August 2010
  • Website:WormBase::API
    The following AceDB model elements are handled generically in the reimplementation. This maxim * you should specify the name of the AceDB model element in lowercase in the configuration file
    2 KB (271 words) - 14:09, 19 June 2014
  • WS186
    The reason for that is that AceDB begins to struggle when one object is linked to 3. Obtain and install a suitable acedb binary for your system
    6 KB (683 words) - 05:51, 3 April 2008
  • WebDev 2016.02.23-Agenda and Minutes
    #*ACeDB to Datomic #**Took reorganized the folder structure when I took away the non ACeDB to Datomic from this repo .
    3 KB (478 words) - 15:41, 23 February 2016
  • WBConfCall 2020.08.20-Agenda and Minutes
    ** Want/need to synchronize Postgres with Hinxton and ACEDB * Chris G wanted to dump pathogenic species, find out how they align with acedb species. How do they get into Hinxton.
    3 KB (440 words) - 08:42, 3 September 2020
  • WBConfCall 2016.12.01-Agenda and Minutes
    Can we replace ACEDB Tree Display with Datatomic? We should continue to provide Tree Display. Ho
    450 bytes (62 words) - 16:44, 1 December 2016
  • WS185
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    6 KB (680 words) - 07:37, 11 January 2008
  • InterMine Strategy Meeting: May 14, 2013
    * Create versioned folders of XML representing various acedb releases. Build mine off of these. Can be used to resurrect old mines. * Find out how to extract version of data in acedb
    2 KB (241 words) - 15:32, 15 May 2013
  • WBConfCall 2024.01.04-Agenda and Minutes
    ** WBVar02157532 - tur003 Variation page is not generated but exists in ACeDB and JBrowse #9376
    618 bytes (81 words) - 21:36, 2 January 2024
  • WormBaseComparativeGenomicsTools
    ...ailable from the Gene pages (link is called syntenic alignment). Or in the ACeDB database as Homol_data on the C.elegans and C.briggsae chromosomes. * ACeDB contains WABA homol_data on the chromosomes
    5 KB (727 words) - 17:31, 27 June 2009
  • WBConfCall 2021.03.04-Agenda and Minutes
    ...f aCeDB, an object database where modeling is easy for curators to do, and acedb handles XREFs and connecting data automatically. ** Caltech curators were writing .ace text files to load into acedb, and early forms were UIs for templates for .ace text files.
    4 KB (743 words) - 12:22, 5 March 2021
  • WBConfCall 2022.04.07-Agenda and Minutes
    ...take a look. Tree display + schema viewer + genetic map stop working when acedb goes down.
    2 KB (279 words) - 16:01, 7 July 2022
  • WS183
    3. Obtain and install a suitable acedb binary for your system (available from www.acedb.org).
    7 KB (800 words) - 10:01, 8 November 2007
  • Linking To WormBase
    == Linking to Acedb Format == ...cal ACeDB database, create a link to <code>http://www.wormbase.org/db/misc/acedb?name=X;class=Y</code>, where X and Y are again replaced with the object nam
    6 KB (1,087 words) - 15:07, 19 June 2014
  • Relations Ontology
    **/home/acedb/kimberly/citace_upload/ro/ontology2ace/ro_obo_to_ro_ace.pl #In the /home/acedb/kimberly/citace_upload/ro/ontology2ace directory on tazendra, use the wget
    3 KB (453 words) - 18:27, 20 September 2023
  • Design Specs: Database Connectivity
    *do "reconnect" if dbh is not set, undef or time-out(AceDB) *http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/acedb.pm
    6 KB (980 words) - 18:48, 11 August 2010

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