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- * Raymond * Raymond in charge of documentation now733 bytes (88 words) - 18:32, 29 May 2013
- | Anatomy_function||Raymond | Anatomy_name||Raymond1 KB (200 words) - 17:59, 6 October 2017
- JD, Raymond * Setting up Raymond's WormMine instance1 KB (183 words) - 19:25, 9 May 2013
- === Action items for Raymond === === Raymond ===1 KB (169 words) - 16:51, 28 May 2013
- ! raymond #Documentation (Raymond)1 KB (147 words) - 14:23, 30 May 2013
- JD, Raymond ** Assigned to Raymond2 KB (241 words) - 15:32, 15 May 2013
- 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),608 bytes (92 words) - 17:29, 20 June 2011
- 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),608 bytes (92 words) - 01:09, 30 June 2015
- ** Raymond - Not about automated predictions, about manual connections of functional h * Raymond - Caltech scrambling for model changes recently. There was discussion on g2 KB (277 words) - 16:10, 17 November 2017
- ''Access code has also changed, see email from Raymond to staff@wormbase for this code'' Raymond: hopefully we won’t need SimpleMine when WormMine is fully featured.<br /1 KB (243 words) - 16:03, 4 August 2016
- *Raymond mentioned UI tweaks and branding *Raymond tasked with wiki for sample queries and how to create templates.2 KB (295 words) - 16:39, 16 May 2013
- == Website Search Function (Raymond)==2 KB (263 words) - 22:55, 16 May 2017
- * update ontology/anatom script on live -- Raymond's request for database_url1,008 bytes (140 words) - 17:20, 3 February 2010
- ! raymond1 KB (154 words) - 14:18, 20 June 2013
- * Raymond's proposal: each of three WB sites contributes a portion of the paper, each * Raymond: each site knows the new features and issues to bring up; could try as an e2 KB (378 words) - 16:32, 3 August 2017
- Raymond: built gene-mapping tool using python Jupyter notebook and google colab. Th Raymond: might not be as good, as they might not be able to adjust things for thems3 KB (494 words) - 16:08, 4 June 2020
- Raymond brings up difficulty in using coordinates to search and retrieve sequence w Raymond sees that WormMine has the capability, but returns a more detailed return b1 KB (209 words) - 15:52, 20 July 2023
- Brief_id ?Text //put in for Raymond and Paul, equivalent to old Remark but shorter ...xt // the whole of old remark plus more to be added by Raymond2 KB (215 words) - 11:09, 10 August 2010
- ==== Raymond: ====2 KB (260 words) - 11:11, 27 July 2012
- * Raymond will spend time on AmiGO and see how can be beneficial to us. Raymond does not have yet the complete code.1 KB (182 words) - 10:02, 2 November 2012
- * Raymond: would be interested in discussing ontologies and their usage in the Allian * Wen and Raymond now have access to outreach@wormbase.org account; will upload videos3 KB (427 words) - 15:32, 1 August 2019
- * Caltech (Raymond, Juancarlos, Chris) worked on new phenotype summary view * Raymond will work with Daniela to get anatomy-associated images displayed on the we2 KB (379 words) - 16:39, 1 October 2015
- ...ki> and select the desired configuration (e.g.: worm.cfg) (Now we're using Raymond's repository instead of the main phenote one : <nowiki>svn co https://obo.s4 KB (613 words) - 03:02, 19 December 2008
- * Raymond wanted to know when this would go live because he has already updated the O * Raymond asked if anyone had objections to a simple gene data mining tool.2 KB (324 words) - 17:41, 2 June 2016
- Anatomy_term ?Anatomy_term //[2006-04-21 ar2] Raymond413 bytes (38 words) - 08:57, 5 October 2010
- // AO_code class - Raymond Lee 040203515 bytes (46 words) - 11:02, 10 August 2010
- * Engaging Raymond more ** Raymond can do this?2 KB (252 words) - 15:53, 10 May 2013
- // ?Anatomy_name - Raymond, krb [030916]769 bytes (70 words) - 10:43, 10 August 2010
- // NEW Expr_profile and SK_map classes added at request of Raymond [010912 krb]595 bytes (73 words) - 10:27, 4 October 2010
- ...b-future group : Todd Harris (TH), Abigail Cabunoc (AC), Adam Wright (AW), Raymond Lee (RL), Juancarlos Chan (JC), Kevin Howe (KH), Michael Paulini (MP), Paul526 bytes (87 words) - 16:01, 18 March 2014
- .../WormBase/website/issues/9282 New external links for connectome display] - Raymond, can you confirm all is working as expected? Yes. They are working now. ...res, Dio, Jae, Juancarlos, Karen, Kimberly, Mark, Michael, Paolo, Ranjana, Raymond, Scott, Stavros, Steph, Todd, Valerio2 KB (283 words) - 15:52, 3 August 2023
- * broken treeview (Raymond): ** would be useful for an ontology browser (Raymond)2 KB (339 words) - 16:20, 20 April 2017
- Daniela: Raymond suggested to obtain standard strain names for Transgenome project. Paul Dav * Raymond: Biologically do they generate knockdown effect?4 KB (645 words) - 23:43, 3 October 2019
- ...ret Duesbury, Ruihua Fang, Jolene Fernandes, Michael Han, Ranjana Kishore, Raymond Lee, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Andrei Petcher ...J. Fiedler, Michael Han, [[User:Tharris|Todd W. Harris]], Ranjana Kishore, Raymond Lee, Sheldon McKay, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky,6 KB (781 words) - 02:18, 1 April 2012
- *Raymond and Juancarlos have taken AMIGO2 infrastructure to make an ontology browser *Raymond has set up a server5 KB (850 words) - 15:32, 5 September 2013
- *** Raymond responded with a linked to Paul David's response in similar ticket #6735 *Raymond introduced Fernand to the team. He is focusing on anatomy function curation2 KB (315 words) - 21:06, 3 July 2020
- Wen: metadata is mostly mapping ontology terms and it should be in Raymond's domain of expertise but she will be be part of the WG. Raymond: finalize workshop presentation? Scott will send slides and/or a recording2 KB (414 words) - 16:14, 18 May 2023
- #*SObAs(raymond) ...enrichment (Tissue, Phenotype, GO) & SObA (Phenotype, GO, and Tissue(?)) (Raymond)3 KB (466 words) - 09:34, 3 March 2017
- // Anatomy_function class for Raymond1 KB (119 words) - 10:41, 10 August 2010
- *next officer Raymond Aug 6 ...on. Involves strain data that will be propagated to gene and allele pages. Raymond proposes that YouTube host the movies and we provide the links. Todd likes3 KB (560 words) - 16:24, 2 August 2012
- ==== Raymond: ====4 KB (503 words) - 08:30, 22 June 2012
- ...rating gene association files that conform to the GAF 2.0 format (Ranjana, Raymond)== ...which is the industry standard, and required for the ontology browser that Raymond and Juancarlos are working on.4 KB (629 words) - 16:57, 6 February 2014
- ! raymond2 KB (215 words) - 14:45, 11 June 2013
- * Raymond: possible lunch meeting849 bytes (126 words) - 16:46, 16 June 2017
- * Raymond - I would prefer one system used by everyone. * Raymond - we should encourage site-spcific projects on GitHub.4 KB (708 words) - 16:41, 16 July 2015
- Bottom_up_modelling // for Raymond in the future for cell upwards approach2 KB (159 words) - 11:11, 10 August 2010
- **Raymond - we do care where this data comes from ***Raymond will proof-read papers to check on corresponding author designation and ema3 KB (407 words) - 01:16, 19 February 2011
- Raymond is thinking about an easy to display solution. Maybe adding more info to th Raymond, Daniela, Eduardo and Wen are planning to start working on this in late Feb3 KB (462 words) - 17:47, 4 February 2021
- ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research1 KB (202 words) - 10:16, 11 June 2012
- * Raymond and Eduardo talked about taking it over * Raymond working on writing paper4 KB (605 words) - 15:21, 3 March 2020
- ! raymond2 KB (298 words) - 14:47, 18 June 2013
- Karen, Lincoln, Raymond Raymond, JD, Kevin, Todd, Paul S, Michael P4 KB (689 words) - 11:13, 29 August 2013
- * Raymond - Flybase has experience of moving to a new system. They may be able to adv * Raymond - we check the numbers in our classes.4 KB (645 words) - 08:57, 27 August 2014
- * Raymond: what about large publications like NAR papers? * Raymond: We could use use WBPerson or Analysis objects as appropriate.8 KB (1,246 words) - 15:52, 12 November 2013
- 3. SoBa Graph for NAR paper. Raymond will discuss with Sibyl on how to change the display.1 KB (165 words) - 18:42, 15 August 2019
- Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into Raymond volunteered to prepare and circulate a template.3 KB (486 words) - 11:14, 21 December 2011
- *** Stavros and Raymond agreed to be representatives; may ask Todd as website representative1 KB (184 words) - 18:13, 16 February 2023
- Raymond Lee (raymond@caltech.edu) Raymond Lee (raymond@caltech.edu)4 KB (522 words) - 16:42, 1 August 2011
- * Raymond will write up a Wiki page for documentation * Raymond will pilot this with help docs for the new SObA phenotype graph5 KB (776 words) - 16:50, 7 January 2016
- * Raymond working on display for paper * Raymond, Juancarlos working on7 KB (1,010 words) - 17:08, 4 May 2017
- * Raymond, Valerio (community curation), Wen (Simple mine)787 bytes (115 words) - 04:11, 4 November 2021
- * Raymond : use Ranjana's document to organize talks, review topics, and other things * Todd could do the tools talk, otherwise Raymond could.7 KB (1,113 words) - 18:19, 6 April 2023
- * GitHub ticket 6775 - Raymond will respond * Raymond interested in this issue as well; Scott, Chris, and Raymond will discuss and come up with an automated approach4 KB (575 words) - 18:18, 6 December 2018
- * Raymond & Juancarlos will work on a SObA graph for GO annotations * Raymond and Juancarlos are working on it4 KB (544 words) - 16:22, 5 January 2017
- *Daniela [Karen/Raymond filling in as conference moderator] **Raymond suggests making a division between for-profit or non-profit, Paul S. sugges3 KB (420 words) - 16:02, 17 August 2017
- '''Raymond - is there a policy to deal with questions from students'''1 KB (181 words) - 15:47, 2 November 2017
- * Raymond will try to remember to forward to staff * Daniela, Wen, Valerio, Eduardo, Raymond met with CeNGEN5 KB (777 words) - 13:18, 1 April 2021
- **position_matrix (Raymond) **rearrangment (Raymond, Mary Ann?)7 KB (1,077 words) - 16:26, 20 July 2017
- Raymond: We have only stored the image and final analysis<br> Raymond: One postgres, two data streams one to acedb and a second to alliance<br>4 KB (709 words) - 13:27, 5 April 2021
- * Raymond: we should have a focus to the SAB meeting like collaborative efforts with * Raymond: we should have a focus to the SAB meeting like collaborative efforts with4 KB (684 words) - 19:43, 5 December 2015
- * Raymond: We should try to write so that the content remains pertinent for a while * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal p7 KB (1,073 words) - 16:26, 2 March 2017
- Raymond has been working on a prototype. People should try it and give feedback.1 KB (203 words) - 16:53, 16 February 2017
- Raymond * Raymond & Chris - fixed gene interaction table dumping script4 KB (624 words) - 17:15, 4 April 2013
- Raymond - can you know if other people have read the message? Other possibility - LINE (Raymond) - could check to see if someone read it3 KB (477 words) - 16:23, 19 March 2015
- * Raymond encountering challenges with setting up regular meeting room reservations i * Anatomy function project with Raymond3 KB (542 words) - 16:49, 1 July 2021
- *Raymond and Juancarlos working on it *Raymond: Assume that once logged into another machine, your keystrokes could be mon5 KB (752 words) - 17:07, 7 July 2011
- **Raymond will send Paul Davis link to page that describes sequence verification1 KB (205 words) - 16:55, 17 May 2012
- ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research2 KB (284 words) - 22:43, 16 August 2010
- *Raymond setup FTP directory for Wen ***Raymond re-installed WS database4 KB (651 words) - 16:11, 2 May 2013
- * Raymond's LEGO-like approach to curating anatomy function * Raymond (WormBase ontology browser)6 KB (857 words) - 16:01, 2 October 2014
- In the future (thank you, Raymond): Contact Person: Raymond Lee5 KB (746 words) - 18:57, 10 August 2010
- ** Raymond, Chris, Ranjana, Valerio, Daniela, Kimberly * Raymond gets slim terms into Solr from OBO release file; Sibyl collecting from diff5 KB (759 words) - 15:02, 11 September 2019
- * Plans to add annotation searches for GO and AO, then bring in input from Raymond, Ranjana, Kimberly1 KB (150 words) - 16:37, 12 May 2010
- ...sentations/2005.11-SAB-CSHL/RL-2005-SAB-AO.ppt Cells and anatomy ontology, Raymond Lee]2 KB (238 words) - 12:04, 20 January 2011
- * Raymond - are we ready to implement as a widget on person page? * Raymond installing new network card4 KB (646 words) - 17:33, 1 September 2016
- ** Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, Ranjana Kishore, Juancarlos Chan * Raymond Lee -- ontology tools etc.5 KB (696 words) - 13:32, 13 July 2018
- ...niela, Faye, Jae, Juancarlos, Karen, Kimberly, Magz, Mark, Paulo, Ranjana, Raymond, Scott, Stavros, Todd, Valerio, Wen2 KB (239 words) - 17:32, 3 December 2020
- | Raymond ||3/16-3/29 ||8/3-8/162 KB (241 words) - 23:04, 13 August 2010
- * coordination between CalTech and Hinxton (Gary, Raymond, Wen), due to the large scale analysis data2 KB (213 words) - 18:30, 1 February 2018
- |[[User:raymond|Raymond]] |[[User:raymond|Raymond]]16 KB (2,207 words) - 23:06, 9 January 2014
- *Raymond: how stable is Datomic? *Raymond: how do we deal with discrepancies between acedb and datomic7 KB (1,137 words) - 17:57, 17 November 2016
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu11 KB (1,688 words) - 11:06, 21 December 2011
- Raymond: Would be good if there were two dynamic links which were updated as Raymond: it's useful to have new release (dev) ASAP. Would like to continue to7 KB (1,220 words) - 15:50, 25 November 2011
- === Tissue enrichment tool (Raymond) ===5 KB (689 words) - 15:35, 7 April 2016
- *Raymond: integration is important; we need to talk about how much work needs to be **Raymond: will look at it13 KB (2,097 words) - 22:48, 7 April 2011
- * Ranjana will discuss with Raymond and Kevin * Juancarlos and Raymond have been working on5 KB (818 words) - 15:55, 1 November 2018
- Some discussion from Todd and Raymond, modified model slightly.3 KB (354 words) - 11:08, 3 December 2010
- ...n leverage the flow from the CalTech site visits to organise the workshop (Raymond / Kimberley)2 KB (280 words) - 17:48, 1 April 2019
- * Ranjana forwarded a help desk issue, will make a ticket. Raymond, have we offered what they want ? Magda and Mark will look into it. Paul2 KB (279 words) - 16:01, 7 July 2022
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu16 KB (2,310 words) - 11:05, 21 December 2011