WormBase-Caltech Weekly Calls
From WormBaseWiki
Contents
Previous Years
2021 Meetings
Feb 4th, 2021
How the "duplicate" function works in OAs with respect to object IDs (Ranjana and Juancarlos)
- A word of caution: when you duplicate a row, for those OAs with Object IDs (eg., WBGenotype00000014) note that the object ID gets duplicated as well and does not advance to the next ID like the PGID does
- If you do use the "duplicate" function, remember to manually change the Object ID
- We can implement checks to make sure distinct annotations/objects don't share the same ID
GAF Wiki and headers
- Any more comments about the Wiki page and the proposal? https://wiki.wormbase.org/index.php/WormBase_gene_association_file
Missing references in expression GAFs
- ~300 missing from anatomy association file and ~45 missing from development association file
- Daniela looking into missing refs; many are personal communications or very old papers
- Will change ?Expr_pattern model to possibly remove ?Author reference and add in a ?Person reference instead
- 399 objects in WS279 reference an author; Daniela will take a look
- Would be good to have some reference for those objects in the GAF file on the FTP site; could use WBPerson when ready
Feb 11th, 2021
Alliance Literature Paper Tags
- What do we definitely want to transfer to the Alliance?
- Current flags vs legacy flags
- Can we map everything to the proposed hierarchy or do we need to add some more classes?