WormBase-Caltech Weekly Calls
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Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
November 1, 2018
Community phenotype requests
- Sent out 1,000 request emails for community submissions of phenotypes on October 18 and October 20
- As before, request focuses on a single paper, but we've now added extra papers at bottom of email message
- We've also added a link for users to click on to indicate that the paper in question (focus paper) has no nematode phenotypes
- 21 emails bounced
- 56 papers received annotations, 44 from direct requests, 12 not directly requested
- 9 of 12 not directly requested were appended requests to email message
- 277 annotations submitted (raw) via the form (some more submitted as Excel spreadsheets)
- 247 allele/transgene phenotype annotations
- 30 RNAi phenotype annotations
- 48 distinct community curators
SPELL
- Todd working on a spell.wormbase.org site for doing worm SPELL analyses
- Should be faster, more stable
Predicted protein-protein interactions
- Jae has requested data set
- Total data set 20GB (how much is C. elegans?)
- Haven't heard back from author recently
- How much do we want this data? Should reach out a couple more times (once every ~two weeks)
November 1, 2018
Author First Pass
- Do curators want to be notified by e-mail when authors flag their datatype in the AFP form?
- Shall we add in the Curation status form Datatypes that are not currently in it (e.g. Time and site of action)