WormBase-Caltech Weekly Calls

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

January 4, 2018

WS264 Upload

• Citace upload to Wen, Tuesday January 16th
• Upload to Hinxton on Jan 19th

Strain data import to AGR for disease

• Will begin to consider pulling in strains into AGR
• Will need to think about how genotypes are built and stored at other MODs
• We should encourage authors to include strain IDs
• Diseases are annotated to genes, alleles, and strains within WB

Curating phenotypes and diseases to strains or genotypes

• Should we generate a ?Genotype class to capture genotypes without a known strain name?
• We could create un-named strain objects, that use a new unique identifier as a primary identifier, that represent the entire genotype of a strain used
• When curating phenotypes to strains, we will want to specify what is the relevant/relative genotype that is causative/correlted with the disease or phenotype observation

• consider strains with same public name that have diverged
• can use new strain names like "WBPaperStrain001", etc. instead of creating new unique ID attribute