WormBase-Caltech Weekly Calls

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2017 Meetings

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October 5, 2017

NAR Paper

  • Raymond will send around reviews

Mary Ann's transition

  • Cecilia will take over laboratory curation
  • Hinxton (Paul Davis) will take over nomenclature work
  • Hinxton will take over strain info, Mitani (NBP) alleles, sequence features (large scale)
  • Sequence feature curation (literature-based, small-scale) will move to Caltech
  • Molecule curation may be split; Hinxton could coordinate with ChEBI; GO-CAM modeling molecules handled at Caltech?
  • SOP? Karen wrote Wiki pages for molecule curation; she will look them over and can review with others
  • Metabolomics was recent big push (biggest effort needed); need to discuss with Michael Witting

AGR Press Release

  • Discussed briefly at AGR all-hands call yesterday
  • No one on the call had much info
  • Ranjana can post on WB blog on Oct 20th (or earlier?)
  • Will ask Stacia

AGR momentum

  • AGR disease working group
    • Lots going on, a lot of progress, still have much to discuss
    • Next need to work out how to pull in new data objects like alleles, strains, genotypes, etc.
    • Will need to establish a basic, consensus AGR data model for these data types/objects
    • How is AGR disease data display compared to WB/MODs? WB is generally (as are other MODs) ahead of AGR
  • Site-visit
    • PIs go to D.C. to discuss AGR
  • Wen working on lab meeting presentations; will present AGR progress, give tutorial
  • Raymond working on methods paper for SObA display
  • Raymond will start working on neural functional units with phenotype

Sequence feature curation

  • Really need to encourage authors to submit tables with specific sequence feature info
  • Need to make the data submission process easy, user-friendly
  • Karen looking into it
  • Work study jobs for students to curate? May not be preferred job for students
  • Temp jobs may be the way to go; but learning curve needs to be very short

WB Person curation/outreach

  • Cecilia contacts 1-6 people per week by email
  • She can ask for contact info: address, email address, phone #, etc.
  • How many persons do we have email addresses for?