WormBase-Caltech Weekly Calls

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July 6, 2017

Noctua

  • Use for all literature curation in future?
  • We would need to see how it could be used for all data types
  • We would also want a full-time developer working on Noctua; maybe bring Juancarlos into the project

SPELL

  • SPELL related data - how to deal with?
    • Data: recalculated, mapping, results dependent on SPELL
    • Analysis (clustering tool): clunky, freezes w/limited resources
  • Wen will work with Juancarlos to generate a SimpleMine-like tool for downloading data sets
  • Wen has to remove log files to make space on machine
  • ~360 data sets
  • Current virtual machine has 10G memory; is becoming limiting
  • SPELL has lots of dependencies; difficult to account for them all when building SPELL
  • Would be good if we could setup a new (larger) virtual machine to run SPELL; how much time/resources do we want to spend on it?