WormBase-Caltech Weekly Calls
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Contents
Previous Years
2017 Meetings
January 5, 2017
BioCurator meeting
- Who from WormBase will go?
- Raymond (SObA), Chris (Community curation), Mary Ann, Wen would like to go
- Daniela maybe for micropublication
International C. elegans Meeting
- June 2017
- Whether all WB staff go depends on whether we have an all hands meeting before/after
- Plenty of things to present; AGR stuff etc.
Citace upload
- Prepare files by 10am on Tuesday, Jan 10
LEGO curation
- Kimberly working on different C. elegans models
- Working on several pathways simultaneously
- Should be in production soon (this year), fully evidenced
- Full benefit may not be apparent until AGR has LEGO fully integrated
- Working out how inferred annotations propagate from Noctua/LEGO model to GAF
- MGI creating many LEGO models
- How are curators, that went to training, using LEGO?
- Curation level view may not be amenable to general biologist/user viewing
- What is the best existing pathway display? WikiPathways? Protege?
- GO people (Seth, Chris M., Suzi etc.) are working on display, but have limited resources for this
- Maybe we could work with WikiPathways team?
- Pathway studio at RGD? Manually generated
- Should WB have a LEGO call? Yes, probably
- Curators may need access to Protein2GO for full curation/inference by sequence similarity
- How do we/should we resolve parallel pipelines for curating cellular component data (Go versus Expression pattern)?
- How do we accommodate specific versus general processes? E.g. specific versus general cell division
