WormBase-Caltech Weekly Calls
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Contents
Previous Years
2014 Meetings
May 1, 2014
Progress report
- Curation status freezes have been collected (daily?)
- These can be used for report
- Review grant proposal: milestones, quarterly updates, etc.
LEGO - Paul Thomas' visit
- We want to work on/think about importing WB GO annotations into LEGO format
- Is .OWL format the final destination of LEGO data for us? Yes, probably
- Will we be able to automate the process and eventually port to WikiPathways or other pathway visualizer?
- Extended evidence codes? For capturing methods?
- We need some trial LEGO curation to start working out the process
- There is a communal desire to achieve a common format for pathways, whether it be SBML, SBGN, LEGO, etc. or some hybrid
- We would like to play around with how to import/interpret/export .OWL files for our data
Pathway curation
- Topic curation: a single (or pair of) curator(s) focusing on pulling together and drawing a pathway for a topic
- Labs adopting a pathway? Outreach, community annotation
- Reaching out to experts to confirm or proof read our pathways
WormBase Ontology Browser (WOBr)
- http://juancarlos.wormbase.org/tools/ontology_browser
- Getting closer to completion
- Working out how to handle different relationships, e.g. "part_of", "has_part"
May 8, 2014
Agenda
- Topic 1
- Topic 2
