WormBase-Caltech Weekly Calls

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2013 Meetings

January

February 7, 2013

Person Cytoscape

• Person-person network viewing on website
• Use person lineages
• Will discuss with web team

WormBook History

• Paul editing a person history section, starting with John White
• Can use history info to link people

Binary vs. Non-binary interaction display

• Cytoscape and interaction table are only displaying interactions as binary interactions, regardless of number of interactors
• We need to assess how many interactions we have that have more than 2 interactors
• Once we have assessed that, we should discuss with web team about how to display these cases

Curation Statistics

• Wen can generate numbers for Citace AND the complete build (rather than Hinxton)?
• Will let Hinxton build the queries
• End-of-build summary for curators (with more database technical numbers) separate from the Release Notes for public (with more biologically interesting numbers)
• Will separate Wiki page into two sections to reflect this
• Public info will continue to be displayed in Release Notes
• Internal info - where should that be displayed?

Postgres info table (on Wiki page)

• Curators will continue to add info to Wiki on scripts, dependencies, ontologies, etc. for each Ontology Annotator

Intermine

• JD gave short demo yesterday
• Will give another tutorial next week (Thursday, Feb 14, 2013 - 8:30am PST)
• Curators can/should test

Nick Brown visit

• PI of FlyBase Cambridge
• Will be here tomorrow around 11am

February 21, 2013

WS237 Upload March 1, 2013

• Citace upload on February 28

WS236 will go live on April 5, 2013

• One week later than previously planned (March 29th)