Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchm |
m (→Topic 1) |
||
Line 42: | Line 42: | ||
== September 6, 2018 == | == September 6, 2018 == | ||
− | === | + | === Genotype class === |
+ | * Chris started initial document to draw up ?Genotype class and make appropriate changes to ?Strain class | ||
+ | * Would be good for people to look at so we can discuss next time | ||
+ | * Would also be good to have Kevin H take a look and provide feedback | ||
+ | |||
+ | === Citace Upload === | ||
+ | * Send citace files to Wen by Sept 18, 10am Pacific | ||
+ | |||
+ | === Automated gene descriptions === | ||
+ | * Group making improvements | ||
+ | * Added disease, protein domains | ||
+ | ** When direct experimental evidence for disease relevance, will say "gene has been used to study" | ||
+ | * When minimal data (information-poor genes), we can refer to human ortholog and data stored for that human gene in Alliance | ||
+ | * Continue to receive feedback from users; include enrichment information, etc. | ||
+ | * Now have good trimming algorithms to retain important info without flooding a description with too many granular terms | ||
+ | * Will not store automated descriptions in Postgres |
Revision as of 16:04, 6 September 2018
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
September 6, 2018
Genotype class
- Chris started initial document to draw up ?Genotype class and make appropriate changes to ?Strain class
- Would be good for people to look at so we can discuss next time
- Would also be good to have Kevin H take a look and provide feedback
Citace Upload
- Send citace files to Wen by Sept 18, 10am Pacific
Automated gene descriptions
- Group making improvements
- Added disease, protein domains
- When direct experimental evidence for disease relevance, will say "gene has been used to study"
- When minimal data (information-poor genes), we can refer to human ortholog and data stored for that human gene in Alliance
- Continue to receive feedback from users; include enrichment information, etc.
- Now have good trimming algorithms to retain important info without flooding a description with too many granular terms
- Will not store automated descriptions in Postgres