Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Models freeze for WS247 on December 6th | * Models freeze for WS247 on December 6th | ||
* Data upload on Jan 9th, 2015 | * Data upload on Jan 9th, 2015 | ||
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+ | J. Pritchard's http://scireader.org/ made for helping people find the best papers to read |
Revision as of 17:11, 13 November 2014
Contents
Previous Years
2014 Meetings
November 6, 2014
Cleaning up obsolete life stages
- Old life stages in ACEDB as string name instead of life stage ID
- Have been cleaned up
Updating Curation Status Form
- Textpresso string matches have been included in the form
- Papers flagged as positive by string matching are included as positives for the indicated data type. Curatable papers not flagged are considered flagged negative (so looking at the stats page for "any flagged" will look like all papers have been flagged, if the string flagging method is selected.
Community Annotation Approaches
- Working on tables and forms
- Will be good to reach out to community (Paul's lab and others)
- Need to consider how we handle controlled vocabularies and ontologies
- Need to see how users/community are able to find the appropriate term for each
- Distinguish between publisher-mandated submission and voluntary submission
- We want to take advantage of the existing data submission forms wherever possible
- Idea: include a link to data submission forms from data widgets within the WormBase website
- Chris working with Textpresso to identify ontology terms from paper text for suggestion to community annotators
Construct object submission in OA
- There have been some problems up until yesterday (Nov 5) where the OA wasn't appropriately taking in ?Construct entries
- Curators can work with Juancarlos to pull up annotation history to double check that data was entered properly
November 13, 2014
WormBase chapter in WormBook
- Google Doc here
- Goal to have at least half of the chapters published by the 2015 International C. elegans Meeting
- May need to submit chapters by ~April 2015
- Plan to have first drafts ready by February 2015
Upload schedule
- Models freeze for WS247 on December 6th
- Data upload on Jan 9th, 2015
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J. Pritchard's http://scireader.org/ made for helping people find the best papers to read