Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== SAB Meeting === | === SAB Meeting === | ||
*Can we start putting together a more detailed agenda, at least for Caltech? | *Can we start putting together a more detailed agenda, at least for Caltech? | ||
| − | *Would be good to decide on our talk topics so we can begin putting | + | *Would be good to decide on our talk topics so we can begin putting our presentation(s) together. |
=== Topic 2 === | === Topic 2 === | ||
Revision as of 14:47, 11 September 2014
Contents
Previous Years
2014 Meetings
September 4, 2014
I need to leave at 5.30pm (ermm, 9.30am CA time?) Mary Ann
Concise Descriptions
- Automated descriptions to go in for WS245
New Upload Schedule
- Delayed a couple weeks compared to original schedule
- Official citace upload to Hinxton on October 10th
- We can/should upload our data Wednesday before SAB trip (October 1st) to Hinxton
- Wen needs queries to include in Citace Upload summary by October 1st
- Upload contingent on models freeze
Data submission as part of publication process
- eLife considering micro-publication, addendums to papers (individual add-on experimental results)
- Can certain data be required to publish? Sequence info, etc. ?
- Could there be a pilot with a specific publisher (like GSA markup)?
Elixir
- http://www.elixir-europe.org/
- Use RDF (Resource Description Framework) triples
- Checking individual statements/sentences from literature for data presence/absence in database
New tags in Qualifier Hash
- Life_stage and Anatomy_term
- Adding to enable annotation of EPIC data
- Couples (or attempts to) time-and-space (life_stage-and-anatomy) annotation of expression pattern
- Can ambiguities be captured?
- This approach (bit of a kludge) introduces some denormalization (normalization can be automated later)
LEGO Curation
- Setting up connection to Minerva
- Juancarlos working with Seth, Chris, Heiko to debug setup
- Would be good (necessary?) to establish a working protocol for collaboration
- Raymond's LEGO-like approach to curating anatomy function
- Annotate a phenotype by annotating relevant DB objects, e.g. anatomy term, GO term, etc. as well as context/condition
- Use minimal relationships (relationship ontologies complicated and difficult to use)
September 11, 2014
SAB Meeting
- Can we start putting together a more detailed agenda, at least for Caltech?
- Would be good to decide on our talk topics so we can begin putting our presentation(s) together.
