Difference between revisions of "WormBase-Caltech Weekly Calls"
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* CANTO - PomBase's Community Annotation Tool | * CANTO - PomBase's Community Annotation Tool | ||
**http://www.ncbi.nlm.nih.gov/pubmed/24574118 | **http://www.ncbi.nlm.nih.gov/pubmed/24574118 | ||
− | ** | + | **Link to demo version: http://curation.pombase.org/demo |
* Topic 2 | * Topic 2 | ||
Revision as of 17:55, 10 July 2014
Contents
Previous Years
2014 Meetings
July 3, 2014
WS245 Upload
- Tuesday, July 29th local citace upload (to Wen)
- Friday, August 1st citace upload to Hinxton
Data models freeze
- Next Friday July 11th
Automated Concise Descriptions
- James and Ranjana making progress
- Several examples of automated descriptions, proof of concept
- Based on 3 GO categories and homology
- Add tissue-specific expression, and go live
- Should add 1000s of descriptions (automated)
- Next, pick terms of higher granularity
- We should ask users what they want: e.g. Is an Ascaris suum gene ortholog in C. elegans essential?
- Manual annotations in future? How can edits be tracked? Gets a new tag?
- Automated descriptions for all objects?
- We will likely separate manual from automated descriptions to ease editing and tracking
- GO terms can be added as IDs and be converted (automatically) to the term name with hyperlink on the web site
New Tazendra machine
- Up and running at dhcp-52-226.caltech.edu; IP address: 131.215.52.226
- Juancarlos will sync the current Tazendra data to the new machine after meeting
- Curators will test forms and dumpers; compare dump outputs from new and old machine
- We can make the new machine live later in the month
July 10, 2014
Agenda
- CANTO - PomBase's Community Annotation Tool
- http://www.ncbi.nlm.nih.gov/pubmed/24574118
- Link to demo version: http://curation.pombase.org/demo
- Topic 2
July 17, 2014
Agenda
- Topic 1
- Topic 2
July 24, 2014
Agenda
- Topic 1
- Topic 2
July 31, 2014
Agenda
- Topic 1
- Topic 2