Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Strain example: https://wormbase.org/species/c_elegans/strain/WBStrain00004309#05--10 | * Strain example: https://wormbase.org/species/c_elegans/strain/WBStrain00004309#05--10 | ||
* Variation example: https://wormbase.org/species/c_elegans/variation/WBVar00248884#08--10 | * Variation example: https://wormbase.org/species/c_elegans/variation/WBVar00248884#08--10 | ||
+ | * Transgene example: https://wormbase.org/species/all/transgene/WBTransgene00004654#04--10 | ||
+ | ** Known issue: searching on synonyms in addition to public name; Sibyl will fix | ||
+ | * Construct example: | ||
+ | |||
=== WS276 Citace upload === | === WS276 Citace upload === |
Revision as of 19:09, 9 January 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
January 9, 2020
Phenotype Curation Requests
- 1,229 emails sent Dec 3-6, 2019
- Received 194 annotations from 40 papers and from 37 distinct community curators
- 37 papers requested, 3 additional papers annotated
- 104 Phenotype OA annotations (from 27 papers; 25 distinct curators)
- 90 RNAi OA annotations (from 20 papers; 19 distinct curators)
- 43 bounced emails
- 2 resent to new addresses
- 5 have backup email addresses (also sent)
Worm Area Meetings
- Chris has (re)requested slots for WormBase for the Worcester Area Worm Meeting and the Boston Area Worm Meeting
- Will update group if/when a slot is assigned (probably not until Fall 2020 at the earliest)
Reference widget Textpresso linkouts
- Now live on WormBase, WS274
- GitHub ticket
- Applies to the following classes: genes, strains, variations, transgenes, constructs, anatomy terms, clones, life stages, rearrangements, molecules, processes
- Gene example: https://wormbase.org/species/c_elegans/gene/WBGene00022861#0d--10
- Strain example: https://wormbase.org/species/c_elegans/strain/WBStrain00004309#05--10
- Variation example: https://wormbase.org/species/c_elegans/variation/WBVar00248884#08--10
- Transgene example: https://wormbase.org/species/all/transgene/WBTransgene00004654#04--10
- Known issue: searching on synonyms in addition to public name; Sibyl will fix
- Construct example:
WS276 Citace upload
- Hinxton upload Jan 31, 2020
- Citace upload on Tuesday, Jan 28, 2020
Author First Pass paper
- AFP resent to Database
- Automated descriptions about to be sent
- SObA, write for micropub? One micropub on SObA and another on comparative SObA
Noctua/GO-CAM
- New version of the Noctua form released next week
- Imports from WormBase?
- Big push in coming months will be to pull in all manual annotations from WB into Noctua (on track)
- Need to work on annotation history on back end
- May have face-to-face meeting in Pasadena