Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchLine 62: | Line 62: | ||
** New Author First Pass - Daniela, Valerio, Kimberly, et al. | ** New Author First Pass - Daniela, Valerio, Kimberly, et al. | ||
** Automated gene descriptions - Ranjana, gene description working group | ** Automated gene descriptions - Ranjana, gene description working group | ||
+ | |||
+ | === GO expression data using Uberon anatomy terms === | ||
+ | * Some GO curators curating C. elegans expression annotations (from synapse annotation project) to Uberon anatomy terms, not WBbt terms | ||
+ | * Kimberly will look into enforcing Noctua editor to use C. elegans anatomy ontology when creating C. elegans annotations | ||
+ | * Can possibly perform automated mapping if appropriate cross-references exist | ||
+ | * Kimberly has already found annotations to inappropriate Uberon terms |
Revision as of 17:50, 6 December 2018
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
December 6, 2018
SObA for disease (& other ontology?) annotations
- Next Alliance all-hands call in February, present SObA for Skunkworks (innovation talks)?
- SObA top-slicing (summary view) gets tricky; Raymond looking into better solutions, if available
- SObA summary could be redundant with ribbon? SObA would provide dynamic, trimmed nodes
Worm phenotype ontology
- Meeting today at 12pm Pacific, 3pm Eastern
- In process of adding back obsolete terms to the ontology
- Question about "has_obo_namespace" attribute; not required for ODK process; used by WB pipelines?
ISB Meeting, Cambridge, UK, April 2019
- Abstracts from WB?
- New Author First Pass - Daniela, Valerio, Kimberly, et al.
- Automated gene descriptions - Ranjana, gene description working group
GO expression data using Uberon anatomy terms
- Some GO curators curating C. elegans expression annotations (from synapse annotation project) to Uberon anatomy terms, not WBbt terms
- Kimberly will look into enforcing Noctua editor to use C. elegans anatomy ontology when creating C. elegans annotations
- Can possibly perform automated mapping if appropriate cross-references exist
- Kimberly has already found annotations to inappropriate Uberon terms