Difference between revisions of "WormBase-Caltech Weekly Calls"
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== October 8, 2015 == | == October 8, 2015 == | ||
− | === | + | === Soliciting community curation === |
+ | * Juancarlos, Ranjana and Chris working on a pipeline to e-mail authors | ||
+ | * Will try to automate as much as possible | ||
+ | * Will avoid e-mailing authors that have already been AFP e-mailed in the last 3 months | ||
+ | * Juancarlos writing scripts to generate list of valid papers with relevant e-mail information | ||
+ | * Would be good to parse corresponding author and first author from paper XMLs, but publishers are not uniform in their format | ||
=== Topic 2 === | === Topic 2 === |
Revision as of 17:56, 8 October 2015
Contents
Previous Years
2015 Meetings
October 1, 2015
Micropublications
- General discussion on DOI handling for micropublications and using the ?Paper model
- Project started with expression pattern submissions
- Micropublications were displayed on ?Expr_pattern pages on WormBase/WormBook
- We do currently assign a DOI to these URLs/pages
- If we put the micro publications in Wormbook shall we request a different DOI? May be enough to request a DOI for WormBook, with just a link to the respective WormBase page
- Daniela has requested changes to ?Expr_pattern model to accommodate micropublication
- So many of the tags were shared (or could be shared) with the ?Paper class
- If micropublications will be indexed by MEDLINE, we could use our standard paper pipeline to capture paper data
- Any lag in indexing is likely negligible (~1 day)
- Daniela & Paul asked NLM to change the title of WormBook from "WormBook: An online review of C. elegans biology" to just "WormBook" to accommodate a broader scope; haven't heard back yet
Community Curation paper
- Due at end of October
- Daniela communicating with Mary Ann; should micropublications be mentioned?
- Database issue that is published concurrently with the BioCurator meeting
- Hopefully we have some feedback by the time we need to make revisions (end of January)
- E-mails to authors for concise description and allele-phenotype will go out today/soon
WS251 citace upload tomorrow
Community editing of concise descriptions
- Would like community to edit manually-written and automated gene descriptions
- Would be nice to have a link to the concise description form from gene overview/existing description
- Same for allele-phenotype form
Traveling to labs
- Soliciting community contributions AND providing user help/guidance
- Need to emphasize the importance of MODs and why they need support
- We should cater our discussions to what the labs specifically work on
- Could start with 2-4 days of trial; half-day at campuses
- Needs to be short talk/seminar (not an hour, much shorter)
- Should we go to local/area meetings
- Will likely be effective to have one-on-one discussions with PIs, lab members
October 8, 2015
Soliciting community curation
- Juancarlos, Ranjana and Chris working on a pipeline to e-mail authors
- Will try to automate as much as possible
- Will avoid e-mailing authors that have already been AFP e-mailed in the last 3 months
- Juancarlos writing scripts to generate list of valid papers with relevant e-mail information
- Would be good to parse corresponding author and first author from paper XMLs, but publishers are not uniform in their format