Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Chris will ask organizers if others can join: post on WormBase blog? May draw too large an audience for the zoom channel; | * Chris will ask organizers if others can join: post on WormBase blog? May draw too large an audience for the zoom channel; | ||
* If the organizers record the talk, we can post it on the blog and WB YouTube channel | * If the organizers record the talk, we can post it on the blog and WB YouTube channel | ||
+ | |||
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+ | == September 10, 2020 == | ||
+ | |||
+ | === GO GAF Files === | ||
+ | * WS278 GO GAF is using the new 2.2 file format | ||
+ | * GO will not be emitting GAF 2.2 until the end of the year (will try to get a fixed date) | ||
+ | * Implications for gene descriptions, but what about other tools, applications at WB? |
Revision as of 13:38, 9 September 2020
Contents
Previous Years
2020 Meetings
September 3, 2020
WS279 Citace upload
- September 25
- Local CIT upload (to Wen) Tuesday September 22 by 10am Pacific
New AFP datatype for curation status form (CSF)?
- afp_othergenefunc (to capture gene function other than enzymatic activity)
- Can wait a bit before adding to CSF; if there will be dedicated curation for that data type we may add later
GO annotation for description
- Kimberly will look into 'male tail tip developement' terms for description
Migrate wobr1 server to AWS
- SOLR, WOBr, SObA, Enrichment analysis
- Working with Sibyl on the process
- Will try migrating wobr1 first, as a test case
- May eventually move, for example, Tazendra
- Will there be drawbacks to doing this?
- Can we regularly ssh into Tazendra on AWS without issue? Costs for transferring large files
- Don't yet know the details of the costs, but we can try and keep track
- We should move into WB or Alliance AWS instances (or Stanford)
WormBase talk at Boston Area Worm Meeting
- https://www.umassmed.edu/ambroslab/meetings/bawm/
- Meeting will be virtual on Zoom
- Chris will give a talk September 23rd, 6pm Eastern, 3pm Pacific (probably first speaker but not sure)
- Send topic requests to Chris for the talk
- Current topics:
- Micropublications
- Author First Pass
- Automated Gene Descriptions
- Community Curation
- WB Query Tools
- Chris will ask organizers if others can join: post on WormBase blog? May draw too large an audience for the zoom channel;
- If the organizers record the talk, we can post it on the blog and WB YouTube channel
September 10, 2020
GO GAF Files
- WS278 GO GAF is using the new 2.2 file format
- GO will not be emitting GAF 2.2 until the end of the year (will try to get a fixed date)
- Implications for gene descriptions, but what about other tools, applications at WB?