Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchm (→AFP pipeline) |
m (→Genotype OA) |
||
(8 intermediate revisions by 2 users not shown) | |||
Line 51: | Line 51: | ||
* Will resend email requests to authors that haven't already responded | * Will resend email requests to authors that haven't already responded | ||
* May also send out for older papers | * May also send out for older papers | ||
+ | * May work with people to help | ||
+ | * Does the old AFP form still work? It should | ||
+ | * If someone has a link to the old form, they won't get one for the new form | ||
+ | * Maybe could set up an automatic redirect from the old form to the new form | ||
+ | * Received many submissions recently (>20% response rate) | ||
+ | |||
+ | === Ontology Annotator === | ||
+ | * Need to work on Genotype OA dumper | ||
+ | * Turns out semicolons are problematic (currently in genotypes and transgenes) for object names (ontology fields) | ||
+ | * Ampersands (&) are also problematic for object names in the OA | ||
+ | ** 20237 | Is[Pgcy-5::daf-2a::venus; Punc-122::mCherry] | 2014-10-08 10:32:45.874519-07 | ||
+ | ** 20239 | Ex[Pgcy-5::casy-1::venus; Pgcy-5::aman-2::mCherry; Punc-122::mCherry] | 2014-10-08 10:45:23.202362-07 | ||
+ | ** 20238 | Is[Pgcy-5::daf-2c::venus; Punc-122::mCherry] | 2014-10-08 10:38:19.859078-07 | ||
+ | ** 25249 | Ex[Prheb-1::rheb-1::GFP; unc-119(+] | 2018-06-29 10:16:40.784295-07 | ||
+ | ** 16283 | [hlh-13::GFP;unc-119(+)] | 2013-02-07 17:43:22.384819-08 | ||
+ | ** 26131 | Ex[pedc-3EDC-3::DsRed;pRF4] | 2019-08-14 08:44:49.91063-07 | ||
+ | |||
+ | === Use Slack More === |
Revision as of 17:06, 2 April 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
April 2, 2020
Community phenotype requests
- March 9-28
- 2,548 emails went out; 89 bounced; 6 resent; 13 backup; 2,478 successful emails
- 361 annotations overall
- 48 papers requested received curation (2% response rate)
- 53 distinct papers overall (5 papers without request)
- 53 distinct persons overall
Community curation volunteers
- Tracking volunteers here
- 14 volunteers so far, all have been assigned a WBPerson ID
- Chris will set up a webinar tutorial in the coming week or two
AFP pipeline
- Will resend email requests to authors that haven't already responded
- May also send out for older papers
- May work with people to help
- Does the old AFP form still work? It should
- If someone has a link to the old form, they won't get one for the new form
- Maybe could set up an automatic redirect from the old form to the new form
- Received many submissions recently (>20% response rate)
Ontology Annotator
- Need to work on Genotype OA dumper
- Turns out semicolons are problematic (currently in genotypes and transgenes) for object names (ontology fields)
- Ampersands (&) are also problematic for object names in the OA
- 20237 | Is[Pgcy-5::daf-2a::venus; Punc-122::mCherry] | 2014-10-08 10:32:45.874519-07
- 20239 | Ex[Pgcy-5::casy-1::venus; Pgcy-5::aman-2::mCherry; Punc-122::mCherry] | 2014-10-08 10:45:23.202362-07
- 20238 | Is[Pgcy-5::daf-2c::venus; Punc-122::mCherry] | 2014-10-08 10:38:19.859078-07
- 25249 | Ex[Prheb-1::rheb-1::GFP; unc-119(+] | 2018-06-29 10:16:40.784295-07
- 16283 | [hlh-13::GFP;unc-119(+)] | 2013-02-07 17:43:22.384819-08
- 26131 | Ex[pedc-3EDC-3::DsRed;pRF4] | 2019-08-14 08:44:49.91063-07