Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== Update on SVM pipeline === | === Update on SVM pipeline === | ||
+ | * New SVM pipeline: more analysis and more parameter tuning | ||
=== Clarifying definitions of "defective" and "deficient" for phenotypes === | === Clarifying definitions of "defective" and "deficient" for phenotypes === |
Revision as of 18:04, 12 September 2019
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2019 Meetings
September 12, 2019
Update on SVM pipeline
- New SVM pipeline: more analysis and more parameter tuning
Clarifying definitions of "defective" and "deficient" for phenotypes
- WB phenotype ontology has many "variant/abnormal" terms and distinct subclass terms for "defective/deficient"
- Have tried to create a logical definition pattern for these terms, but the vagueness of the meaning of "defective" and how it is distinct from "abnormal" has stalled the process
- What do we mean exactly by "defective" and how, specifically, is this distinct from "abnormal"?
- Definitions include meanings or words:
- "aberrant"
- "defective"
- "defect"
- "defects"
- "deficiency"
- "disrupted"
- "ineffective"
- "perturbation that disrupts"
- "variations in the ability"
- failure to execute the characteristic response = abnormal?
- abnormal
- abnormality leading to specific outcomes
- fail to exhibit the same taxis behavior = abnormal?
- failure
- failure OR delayed
- failure/abnormal